Wall clock time and date at job start Mon Mar 30 2020 03:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47254 * 2 1 4 4 C 1.48534 * 110.99830 * 52.60377 * 3 2 1 5 5 C 1.54939 * 103.22817 * 159.71871 * 4 3 2 6 6 C 1.54596 * 102.92012 * 322.58829 * 5 4 3 7 7 H 1.09001 * 110.31032 * 263.03776 * 6 5 4 8 8 C 1.53000 * 110.30916 * 140.87240 * 6 5 4 9 9 H 1.09000 * 109.62885 * 189.98545 * 8 6 5 10 10 O 1.43371 * 109.63184 * 310.37443 * 8 6 5 11 11 C 1.44190 * 107.28695 * 120.54830 * 10 8 6 12 12 C 1.54913 * 103.07873 * 21.43756 * 11 10 8 13 13 H 1.09004 * 110.97826 * 82.58419 * 12 11 10 14 14 C 1.50703 * 110.97908 * 206.33008 * 12 11 10 15 15 H 1.08000 * 119.99782 * 359.97438 * 14 12 11 16 16 C 1.37874 * 120.00002 * 180.02562 * 14 12 11 17 17 N 1.31519 * 119.99929 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00036 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47148 * 59.99351 * 18 16 14 20 20 H 1.48494 * 109.46942 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46630 * 299.99564 * 18 16 14 22 22 O 1.43752 * 109.63321 * 69.59115 * 8 6 5 23 23 C 1.47901 * 111.00170 * 169.99716 * 3 2 1 24 24 H 1.08998 * 109.47533 * 59.99633 * 1 2 3 25 25 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00004 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99996 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00187 * 2 1 3 29 29 H 1.08996 * 110.66891 * 278.15580 * 4 3 2 30 30 H 1.09001 * 110.67193 * 41.28416 * 4 3 2 31 31 H 1.08998 * 110.72475 * 204.22657 * 5 4 3 32 32 H 1.09003 * 110.87498 * 81.01220 * 5 4 3 33 33 H 1.09004 * 110.69505 * 139.83424 * 11 10 8 34 34 H 1.09003 * 110.69616 * 262.86516 * 11 10 8 35 35 H 0.97002 * 119.99800 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.91618 * 333.51273 * 23 3 2 37 37 H 1.08998 * 109.91656 * 94.80222 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4031 2.1675 1.1017 5 6 2.3781 3.3585 1.2794 6 6 3.7623 2.7090 1.0513 7 1 4.2236 2.4561 2.0059 8 6 4.6672 3.6527 0.2566 9 1 5.5691 3.1231 -0.0503 10 8 3.9692 4.1269 -0.9025 11 6 3.9101 5.5645 -0.8087 12 6 5.0720 5.9007 0.1592 13 1 6.0239 5.9347 -0.3707 14 6 4.8137 7.1975 0.8823 15 1 3.9086 7.7535 0.6873 16 6 5.7334 7.6745 1.7920 17 7 6.8358 6.9976 2.0291 18 14 5.4130 9.2815 2.6889 19 1 4.1574 9.1686 3.4736 20 1 6.5448 9.5710 3.6055 21 1 5.2818 10.3822 1.7007 22 8 5.0239 4.7810 1.0727 23 6 3.4784 1.4314 0.2398 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.4126 2.5207 0.8151 30 1 1.3516 1.5731 2.0139 31 1 2.3059 3.7691 2.2865 32 1 2.1872 4.1312 0.5347 33 1 4.0770 6.0214 -1.7842 34 1 2.9544 5.8845 -0.3934 35 1 7.4827 7.3331 2.6694 36 1 3.7895 0.5543 0.8073 37 1 4.0099 1.4696 -0.7110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258406458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:42 Heat of formation + Delta-G solvation = -109.586207 kcal Electronic energy + Delta-G solvation = -18276.531892 eV Core-core repulsion = 15438.839958 eV Total energy + Delta-G solvation = -2837.691935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.30682 -39.51257 -35.76881 -34.85985 -34.30277 -31.42864 -30.22480 -29.48224 -26.80017 -24.75443 -24.10049 -23.09032 -21.49123 -20.90392 -18.95301 -18.00906 -17.42281 -16.88680 -16.58165 -16.26607 -15.79126 -15.52454 -15.09604 -14.61881 -14.30089 -14.07031 -13.73890 -13.46643 -13.43023 -13.13101 -12.76399 -12.58247 -12.44839 -12.35740 -12.23321 -12.06246 -11.97845 -11.83964 -11.62545 -11.22371 -10.85457 -10.59080 -10.17946 -9.31023 -8.25718 -6.48225 1.41863 1.44850 1.52855 2.36648 2.79397 3.01810 3.11350 3.41441 3.64390 3.81873 4.13311 4.20846 4.22542 4.28630 4.32747 4.40982 4.52736 4.53905 4.58040 4.65309 4.70091 4.79855 4.89886 4.93199 4.98958 5.08093 5.14973 5.18604 5.31809 5.36120 5.39001 5.62648 5.95253 6.02814 6.19331 6.52041 6.74123 7.28719 8.83618 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045078 B = 0.005670 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.001980 B = 4937.377893 C = 5072.184996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.039 3.961 3 N -0.528 5.528 4 C 0.048 3.952 5 C -0.110 4.110 6 C -0.107 4.107 7 H 0.082 0.918 8 C 0.227 3.773 9 H 0.060 0.940 10 O -0.391 6.391 11 C 0.038 3.962 12 C 0.177 3.823 13 H 0.012 0.988 14 C -0.552 4.552 15 H 0.075 0.925 16 C 0.025 3.975 17 N -0.905 5.905 18 Si 0.971 3.029 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.260 1.260 22 O -0.391 6.391 23 C 0.058 3.942 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.266 0.734 36 H 0.060 0.940 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.912 -10.971 -1.976 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 N -0.253 5.253 4 C -0.079 4.079 5 C -0.148 4.148 6 C -0.127 4.127 7 H 0.100 0.900 8 C 0.131 3.869 9 H 0.078 0.922 10 O -0.313 6.313 11 C -0.039 4.039 12 C 0.121 3.879 13 H 0.030 0.970 14 C -0.589 4.589 15 H 0.093 0.907 16 C -0.178 4.178 17 N -0.542 5.542 18 Si 0.794 3.206 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.185 1.185 22 O -0.312 6.312 23 C -0.070 4.070 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.926 -10.921 -2.339 14.942 hybrid contribution 0.748 0.523 1.206 1.513 sum -9.178 -10.397 -1.133 13.915 Atomic orbital electron populations 1.21809 0.93741 1.02657 1.02239 1.22359 0.96994 0.88411 1.01115 1.64801 1.03909 1.12861 1.43691 1.23155 0.98349 0.93703 0.92737 1.22357 0.93223 0.98026 1.01219 1.22363 0.96765 0.95034 0.98508 0.89959 1.23926 0.91924 0.89603 0.81431 0.92243 1.88731 1.78151 1.21036 1.43334 1.24171 0.99243 0.79810 1.00641 1.21317 0.92767 0.86307 0.87460 0.97038 1.21219 1.06856 1.04256 1.26544 0.90715 1.26015 0.94101 1.00919 0.96758 1.70148 1.09986 1.40043 1.34005 0.85429 0.77924 0.78764 0.78451 1.19329 1.20751 1.18456 1.89432 1.89747 1.18127 1.33934 1.22656 0.89767 0.95281 0.99264 0.92491 0.90551 0.92544 0.90396 0.94340 0.89348 0.92831 0.91827 0.91985 0.88388 0.91674 0.92488 0.92211 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.57 71.98 0.69 -1.85 16 2 C 0.04 0.81 5.75 86.30 0.50 1.31 16 3 N -0.53 -14.51 5.40 -883.04 -4.77 -19.28 16 4 C 0.05 1.28 5.10 86.65 0.44 1.73 16 5 C -0.11 -3.76 6.40 31.80 0.20 -3.56 16 6 C -0.11 -3.80 3.13 -9.92 -0.03 -3.83 16 7 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 8 C 0.23 9.77 3.42 71.98 0.25 10.01 16 9 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 10 O -0.39 -16.71 9.97 -126.21 -1.26 -17.97 16 11 C 0.04 1.64 7.04 72.64 0.51 2.15 16 12 C 0.18 9.37 3.25 30.50 0.10 9.47 16 13 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 14 C -0.55 -30.69 8.83 25.60 0.23 -30.46 16 15 H 0.07 3.93 7.76 -2.91 -0.02 3.90 16 16 C 0.02 1.38 5.46 84.65 0.46 1.84 16 17 N -0.91 -53.97 13.21 21.45 0.28 -53.69 16 18 Si 0.97 42.91 29.54 68.60 2.03 44.94 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 22 O -0.39 -20.82 10.85 -126.21 -1.37 -22.19 16 23 C 0.06 1.71 6.20 86.44 0.54 2.25 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 0.97 6.79 -2.39 -0.02 0.95 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 0.75 7.81 -2.39 -0.02 0.73 16 29 H 0.09 2.18 7.66 -2.39 -0.02 2.16 16 30 H 0.05 1.28 8.00 -2.39 -0.02 1.26 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.06 2.39 5.78 -2.39 -0.01 2.38 16 33 H 0.10 3.83 8.14 -2.38 -0.02 3.81 16 34 H 0.07 2.79 7.32 -2.39 -0.02 2.78 16 35 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.06 1.51 7.57 -2.39 -0.02 1.49 16 37 H 0.07 2.26 7.64 -2.39 -0.02 2.24 16 Total: -1.00 -63.82 294.23 -0.17 -63.99 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.03 Total: 15.13 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 3.88 Total: -10.94 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -4.48 Total: -72.97 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -2.63 Total: -40.16 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -63.82 -0.17 -63.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258406458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.599 kcal (2) G-P(sol) polarization free energy of solvation -63.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds