Wall clock time and date at job start Mon Mar 30 2020 04:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47840 * 110.99815 * 2 1 4 4 C 1.54915 * 104.79506 * 146.36500 * 3 2 1 5 5 C 1.55142 * 101.65012 * 322.92480 * 4 3 2 6 6 H 1.09000 * 110.85859 * 277.20430 * 5 4 3 7 7 C 1.53000 * 110.70180 * 154.03537 * 5 4 3 8 8 C 1.52997 * 109.47060 * 179.97438 * 7 5 4 9 9 H 1.09007 * 110.36063 * 52.67220 * 8 7 5 10 10 O 1.44402 * 110.40266 * 290.22632 * 8 7 5 11 11 C 1.44294 * 104.60940 * 201.87052 * 10 8 7 12 12 C 1.54170 * 104.94225 * 23.63739 * 11 10 8 13 13 H 1.08997 * 110.34852 * 241.13446 * 12 11 10 14 14 C 1.50703 * 110.34412 * 118.86229 * 12 11 10 15 15 H 1.07996 * 120.00312 * 3.03742 * 14 12 11 16 16 C 1.37885 * 119.99646 * 183.02546 * 14 12 11 17 17 N 1.31509 * 120.00051 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99618 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46872 * 90.00606 * 18 16 14 20 20 H 1.48496 * 109.46912 * 210.00294 * 18 16 14 21 21 H 1.48495 * 109.47551 * 330.00527 * 18 16 14 22 22 O 1.44290 * 104.93997 * 0.02562 * 12 11 10 23 23 C 1.47443 * 110.99708 * 120.84338 * 2 1 3 24 24 H 1.09000 * 109.47164 * 299.15729 * 1 2 3 25 25 H 1.08997 * 109.46838 * 59.15899 * 1 2 3 26 26 H 1.08997 * 109.47354 * 179.15821 * 1 2 3 27 27 H 1.08998 * 110.37376 * 265.18857 * 3 2 1 28 28 H 1.08994 * 110.37634 * 27.53263 * 3 2 1 29 29 H 1.09004 * 110.98996 * 204.83781 * 4 3 2 30 30 H 1.09000 * 110.99017 * 81.01575 * 4 3 2 31 31 H 1.09002 * 109.47398 * 299.94966 * 7 5 4 32 32 H 1.09001 * 109.47194 * 59.95146 * 7 5 4 33 33 H 1.08997 * 110.34454 * 264.76868 * 11 10 8 34 34 H 1.08995 * 110.34638 * 142.50631 * 11 10 8 35 35 H 0.97005 * 119.99913 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.89022 * 117.34150 * 23 2 1 37 37 H 1.08997 * 110.02814 * 356.21681 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3048 1.3027 0.8296 5 6 2.9158 0.2822 1.9315 6 1 2.3752 0.7724 2.7412 7 6 4.1569 -0.4338 2.4681 8 6 3.7419 -1.4312 3.5514 9 1 2.9578 -2.0908 3.1794 10 8 3.2963 -0.7331 4.7344 11 6 3.4440 -1.6935 5.8011 12 6 4.5133 -2.6840 5.2989 13 1 4.0964 -3.6887 5.2291 14 6 5.7088 -2.6741 6.2165 15 1 5.7004 -2.0643 7.1078 16 6 6.8132 -3.4439 5.9182 17 7 6.8235 -4.1862 4.8327 18 14 8.2947 -3.4321 7.0560 19 1 8.1398 -4.4952 8.0812 20 1 9.5272 -3.6819 6.2663 21 1 8.3948 -2.1101 7.7248 22 8 4.8822 -2.2013 3.9901 23 6 1.9973 -0.7057 1.1819 24 1 -0.3633 0.5007 0.8974 25 1 -0.3633 0.5268 -0.8823 26 1 -0.3634 -1.0275 -0.0151 27 1 2.2148 1.7038 -1.0182 28 1 1.2889 2.0592 0.4723 29 1 3.5495 2.2720 1.2640 30 1 4.1302 0.9281 0.2243 31 1 4.6497 -0.9660 1.6543 32 1 4.8441 0.2985 2.8919 33 1 2.5012 -2.2111 5.9782 34 1 3.7828 -1.1995 6.7116 35 1 7.6007 -4.7275 4.6227 36 1 2.5697 -1.5784 0.8675 37 1 1.1771 -1.0141 1.8301 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258442049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:30 Heat of formation + Delta-G solvation = -94.524198 kcal Electronic energy + Delta-G solvation = -17916.253801 eV Core-core repulsion = 15079.215004 eV Total energy + Delta-G solvation = -2837.038797 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.44838 -38.59527 -33.90837 -33.54183 -32.43594 -30.40854 -28.82150 -26.99077 -25.15804 -24.57395 -21.89189 -21.11049 -20.92189 -19.63755 -17.04781 -16.27214 -15.90459 -15.36753 -15.03494 -14.53391 -14.30911 -14.14262 -13.83552 -13.43947 -13.11315 -12.70424 -12.45432 -12.08960 -11.70890 -11.61173 -11.36456 -11.33008 -11.10228 -10.92299 -10.88914 -10.58928 -10.47578 -10.43954 -9.97027 -9.56281 -8.98466 -8.65706 -8.36332 -8.26108 -6.09485 -4.23971 3.27120 3.34045 3.37749 3.99996 4.36063 4.55600 4.62268 4.74567 4.91576 5.08672 5.26188 5.31862 5.34727 5.46414 5.54453 5.59869 5.68282 5.74319 5.76400 5.88745 5.98081 6.04023 6.10377 6.13224 6.21067 6.32735 6.42521 6.52105 6.64012 6.91841 7.01015 7.06344 7.34142 7.79025 8.07173 8.36104 8.85188 9.47506 10.98288 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046807 B = 0.005065 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.053695 B = 5527.241048 C = 5652.508350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.041 3.959 4 C -0.125 4.125 5 C -0.103 4.103 6 H 0.081 0.919 7 C -0.098 4.098 8 C 0.215 3.785 9 H 0.049 0.951 10 O -0.398 6.398 11 C 0.024 3.976 12 C 0.179 3.821 13 H 0.039 0.961 14 C -0.538 4.538 15 H 0.066 0.934 16 C 0.078 3.922 17 N -0.862 5.862 18 Si 0.897 3.103 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 O -0.355 6.355 23 C 0.042 3.958 24 H 0.026 0.974 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.263 0.737 36 H 0.082 0.918 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.626 8.141 -7.337 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.260 5.260 3 C -0.087 4.087 4 C -0.163 4.163 5 C -0.123 4.123 6 H 0.099 0.901 7 C -0.135 4.135 8 C 0.119 3.881 9 H 0.066 0.934 10 O -0.319 6.319 11 C -0.053 4.053 12 C 0.124 3.876 13 H 0.056 0.944 14 C -0.576 4.576 15 H 0.084 0.916 16 C -0.128 4.128 17 N -0.498 5.498 18 Si 0.724 3.276 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 O -0.275 6.275 23 C -0.085 4.085 24 H 0.044 0.956 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.261 7.921 -8.016 14.586 hybrid contribution 0.307 0.131 1.388 1.428 sum -8.954 8.052 -6.628 13.745 Atomic orbital electron populations 1.22529 0.88052 1.01990 1.00300 1.63598 1.07666 1.14345 1.40425 1.23050 0.95838 0.89471 1.00294 1.22771 0.97506 0.99332 0.96661 1.22322 0.96653 0.96021 0.97262 0.90102 1.21517 0.96787 0.98019 0.97224 1.24253 0.88184 0.88423 0.87248 0.93360 1.89059 1.86334 1.38402 1.18117 1.24171 0.98226 0.91290 0.91629 1.21095 0.93397 0.92174 0.80966 0.94368 1.21067 1.01003 1.28103 1.07389 0.91563 1.25082 0.98620 0.94241 0.94864 1.70029 1.29827 1.26040 1.23920 0.86533 0.81985 0.78587 0.80527 1.20400 1.20962 1.19628 1.89607 1.35935 1.67566 1.34412 1.22998 0.98009 0.97638 0.89865 0.95570 0.91664 0.91425 0.90419 0.93775 0.90798 0.90355 0.90050 0.90475 0.93576 0.89635 0.92712 0.89998 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.12 60.07 0.55 0.76 16 2 N -0.54 -6.78 5.44 -239.52 -1.30 -8.08 16 3 C 0.04 0.46 6.73 -2.30 -0.02 0.44 16 4 C -0.12 -1.50 6.52 -24.59 -0.16 -1.66 16 5 C -0.10 -1.48 2.92 -88.79 -0.26 -1.74 16 6 H 0.08 1.23 8.00 -51.93 -0.42 0.81 16 7 C -0.10 -1.71 4.74 -26.73 -0.13 -1.84 16 8 C 0.21 4.54 3.70 37.16 0.14 4.68 16 9 H 0.05 0.97 7.35 -51.92 -0.38 0.59 16 10 O -0.40 -8.68 11.26 -59.42 -0.67 -9.35 16 11 C 0.02 0.52 7.54 37.77 0.28 0.80 16 12 C 0.18 4.70 3.40 -27.27 -0.09 4.61 16 13 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.54 -15.16 8.82 -34.44 -0.30 -15.46 16 15 H 0.07 1.80 7.36 -52.49 -0.39 1.41 16 16 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 17 N -0.86 -25.58 12.93 55.43 0.72 -24.87 16 18 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 22 O -0.35 -9.46 10.69 -59.42 -0.64 -10.09 16 23 C 0.04 0.59 5.55 -2.83 -0.02 0.57 16 24 H 0.03 0.27 8.10 -51.93 -0.42 -0.15 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.46 7.78 -51.93 -0.40 0.06 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 31 H 0.08 1.41 8.06 -51.93 -0.42 0.99 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.84 7.43 -51.93 -0.39 1.45 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 1.21 7.76 -51.93 -0.40 0.80 16 37 H 0.05 0.75 7.59 -51.93 -0.39 0.35 16 LS Contribution 298.44 15.07 4.50 4.50 Total: -1.00 -30.89 298.44 -8.64 -39.52 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.12 Total: -1.18 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.10 Total: -6.72 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: -0.59 Total: -32.95 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -1.30 Total: -19.44 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.89 -8.64 -39.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258442049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.001 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds