Wall clock time and date at job start Mon Mar 30 2020 04:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00043 * 2 1 4 4 C 1.53035 * 109.52041 * 174.16120 * 3 2 1 5 5 C 1.53121 * 109.31081 * 59.16340 * 4 3 2 6 6 C 1.53117 * 109.15610 * 302.40230 * 5 4 3 7 7 H 1.09003 * 109.50686 * 297.63398 * 6 5 4 8 8 C 1.53002 * 109.50202 * 177.55624 * 6 5 4 9 9 H 1.08999 * 109.51203 * 59.76098 * 8 6 5 10 10 O 1.43752 * 109.63255 * 299.43997 * 8 6 5 11 11 C 1.44785 * 104.81900 * 215.80883 * 10 8 6 12 12 C 1.54913 * 101.72043 * 36.10403 * 11 10 8 13 13 H 1.08996 * 110.69538 * 82.83718 * 12 11 10 14 14 C 1.50696 * 110.84441 * 205.97575 * 12 11 10 15 15 H 1.07999 * 119.99947 * 355.19334 * 14 12 11 16 16 C 1.37885 * 120.00387 * 175.19614 * 14 12 11 17 17 N 1.31512 * 119.99586 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 119.99951 * 179.97438 * 16 14 12 19 19 H 1.48489 * 109.47613 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46746 * 120.00459 * 18 16 14 21 21 H 1.48501 * 109.46900 * 239.99775 * 18 16 14 22 22 O 1.43375 * 109.63090 * 180.02562 * 8 6 5 23 23 C 1.46843 * 110.99649 * 235.79291 * 2 1 3 24 24 H 1.08996 * 109.47210 * 184.20777 * 1 2 3 25 25 H 1.09002 * 109.46731 * 304.20756 * 1 2 3 26 26 H 1.08994 * 109.47402 * 64.20646 * 1 2 3 27 27 H 1.08997 * 109.46179 * 294.17827 * 3 2 1 28 28 H 1.08999 * 109.46044 * 54.15127 * 3 2 1 29 29 H 1.08999 * 109.50133 * 179.12062 * 4 3 2 30 30 H 1.08999 * 109.50532 * 299.20274 * 4 3 2 31 31 H 1.08997 * 109.55715 * 182.47889 * 5 4 3 32 32 H 1.08997 * 109.49274 * 62.28551 * 5 4 3 33 33 H 1.08999 * 110.97603 * 278.00181 * 11 10 8 34 34 H 1.08996 * 110.97936 * 154.21492 * 11 10 8 35 35 H 0.96999 * 120.00108 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46751 * 65.82190 * 23 2 1 37 37 H 1.09006 * 109.45481 * 305.84882 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 0.1467 5 6 4.1195 0.5366 -1.0139 6 6 3.5180 -0.8714 -1.0209 7 1 3.7813 -1.3843 -0.0958 8 6 4.0679 -1.6558 -2.2140 9 1 5.1532 -1.7215 -2.1375 10 8 3.7095 -0.9897 -3.4365 11 6 3.4581 -2.0583 -4.3805 12 6 2.8036 -3.1310 -3.4745 13 1 1.7398 -2.9307 -3.3470 14 6 3.0198 -4.5123 -4.0368 15 1 3.5029 -4.6358 -4.9948 16 6 2.6009 -5.6186 -3.3284 17 7 2.0121 -5.4682 -2.1621 18 14 2.8683 -7.3306 -4.0259 19 1 3.5467 -7.2283 -5.3429 20 1 3.7144 -8.1182 -3.0937 21 1 1.5570 -8.0065 -4.1952 22 8 3.5059 -2.9747 -2.2236 23 6 1.9952 -0.7707 -1.1338 24 1 -0.3633 -1.0248 0.0754 25 1 -0.3633 0.5778 0.8499 26 1 -0.3634 0.4471 -0.9252 27 1 1.7325 1.8608 -0.9375 28 1 1.5635 1.9256 0.8330 29 1 3.9099 2.3511 0.1310 30 1 3.7814 0.8572 1.0909 31 1 5.2004 0.4704 -0.8897 32 1 3.8900 1.0355 -1.9554 33 1 4.3896 -2.4264 -4.8104 34 1 2.7703 -1.7350 -5.1618 35 1 1.7177 -6.2464 -1.6635 36 1 1.7324 -0.2708 -2.0660 37 1 1.5633 -1.7715 -1.1241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258902957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:22 Heat of formation + Delta-G solvation = -116.080929 kcal Electronic energy + Delta-G solvation = -18565.362612 eV Core-core repulsion = 15727.389045 eV Total energy + Delta-G solvation = -2837.973567 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.28154 -39.43016 -35.79327 -34.92446 -34.41117 -32.42424 -30.50329 -27.76068 -26.89429 -25.74978 -23.74602 -23.15308 -22.32561 -20.51154 -18.89723 -17.79365 -17.29023 -16.83534 -16.51126 -16.25644 -15.72368 -15.46882 -14.92543 -14.88182 -14.55842 -14.07484 -14.00259 -13.63377 -13.45429 -13.15135 -13.06115 -12.82561 -12.59130 -12.38823 -12.32056 -12.10764 -11.70888 -11.55649 -11.37620 -11.16436 -10.87637 -10.68877 -9.99327 -9.31141 -8.21450 -6.44972 1.40634 1.41998 1.54637 2.37340 2.80124 2.93547 3.09744 3.52192 3.81765 3.91759 4.04056 4.15839 4.22625 4.25622 4.36677 4.47162 4.50927 4.54243 4.62404 4.66816 4.71639 4.83003 4.87987 4.94649 4.95576 5.00895 5.06727 5.16324 5.31632 5.40629 5.49545 5.64447 6.03684 6.06068 6.19696 6.50717 6.82403 7.32091 8.86806 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033796 B = 0.006851 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.292157 B = 4085.716907 C = 4510.239398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.556 5.556 3 C 0.052 3.948 4 C -0.109 4.109 5 C -0.106 4.106 6 C -0.087 4.087 7 H 0.076 0.924 8 C 0.222 3.778 9 H 0.071 0.929 10 O -0.393 6.393 11 C 0.030 3.970 12 C 0.184 3.816 13 H 0.006 0.994 14 C -0.563 4.563 15 H 0.075 0.925 16 C 0.025 3.975 17 N -0.898 5.898 18 Si 0.968 3.032 19 H -0.259 1.259 20 H -0.281 1.281 21 H -0.275 1.275 22 O -0.392 6.392 23 C 0.085 3.915 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.023 0.977 27 H 0.028 0.972 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.264 0.736 36 H 0.022 0.978 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 12.371 2.684 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.280 5.280 3 C -0.075 4.075 4 C -0.147 4.147 5 C -0.143 4.143 6 C -0.106 4.106 7 H 0.094 0.906 8 C 0.126 3.874 9 H 0.088 0.912 10 O -0.314 6.314 11 C -0.046 4.046 12 C 0.129 3.871 13 H 0.024 0.976 14 C -0.600 4.600 15 H 0.093 0.907 16 C -0.178 4.178 17 N -0.534 5.534 18 Si 0.792 3.208 19 H -0.182 1.182 20 H -0.207 1.207 21 H -0.201 1.201 22 O -0.313 6.313 23 C -0.043 4.043 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.216 12.155 3.393 12.678 hybrid contribution -0.389 -0.933 -1.075 1.476 sum 0.826 11.222 2.317 11.489 Atomic orbital electron populations 1.22362 0.86609 1.02063 1.01078 1.61933 1.08478 1.14690 1.42932 1.22229 0.96375 0.88102 1.00835 1.21577 0.93867 1.00992 0.98240 1.21504 1.00316 0.93100 0.99414 1.21547 0.95028 0.97238 0.96773 0.90564 1.24088 0.96225 0.81393 0.85728 0.91221 1.89004 1.90013 1.30818 1.21595 1.24433 1.00533 0.86372 0.93263 1.21126 0.91159 0.94871 0.79936 0.97608 1.21439 1.41966 0.90971 1.05631 0.90727 1.25991 0.93229 1.03905 0.94699 1.70190 1.38164 1.31394 1.13679 0.85368 0.78118 0.78488 0.78796 1.18228 1.20673 1.20069 1.89195 1.71117 1.29324 1.41683 1.21660 0.95025 0.96758 0.90881 0.92695 0.88980 0.95838 0.95353 0.88751 0.88731 0.91213 0.90566 0.92190 0.91117 0.87287 0.92733 0.96028 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.59 127.69 1.22 1.97 16 2 N -0.56 -17.78 4.91 -922.61 -4.53 -22.31 16 3 C 0.05 1.30 5.47 86.32 0.47 1.77 16 4 C -0.11 -2.52 6.09 30.65 0.19 -2.33 16 5 C -0.11 -3.01 5.18 30.67 0.16 -2.85 16 6 C -0.09 -3.22 2.46 -10.74 -0.03 -3.24 16 7 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 8 C 0.22 9.49 3.65 71.98 0.26 9.75 16 9 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 10 O -0.39 -16.29 9.97 -126.22 -1.26 -17.55 16 11 C 0.03 1.28 7.37 72.64 0.54 1.81 16 12 C 0.18 9.73 3.51 30.50 0.11 9.84 16 13 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 14 C -0.56 -31.41 8.84 25.60 0.23 -31.18 16 15 H 0.07 3.93 7.78 -2.91 -0.02 3.90 16 16 C 0.02 1.40 5.42 84.66 0.46 1.86 16 17 N -0.90 -54.11 12.95 21.45 0.28 -53.83 16 18 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 19 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 22 O -0.39 -21.04 9.83 -126.22 -1.24 -22.28 16 23 C 0.08 3.31 4.46 86.33 0.38 3.70 16 24 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.09 2.01 8.09 -2.39 -0.02 1.99 16 26 H 0.02 0.63 8.14 -2.39 -0.02 0.62 16 27 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.79 7.64 -2.39 -0.02 1.77 16 33 H 0.07 2.89 8.04 -2.39 -0.02 2.87 16 34 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 35 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.02 0.88 7.64 -2.39 -0.02 0.86 16 37 H 0.04 2.03 7.70 -2.38 -0.02 2.01 16 Total: -1.00 -65.25 295.27 0.28 -64.96 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.02 Total: 14.49 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 3.99 Total: -8.90 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -4.25 Total: -76.14 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -2.50 Total: -39.83 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -65.25 0.28 -64.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258902957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.119 kcal (2) G-P(sol) polarization free energy of solvation -65.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds