Wall clock time and date at job start Mon Mar 30 2020 04:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47444 * 110.99536 * 2 1 4 4 C 1.54324 * 107.22982 * 123.26019 * 3 2 1 5 5 C 1.55140 * 103.02021 * 22.28339 * 4 3 2 6 6 C 1.47842 * 110.99980 * 120.84309 * 2 1 3 7 7 H 1.08994 * 110.37579 * 332.46294 * 6 2 1 8 8 C 1.53001 * 110.37320 * 94.81103 * 6 2 1 9 9 C 1.53005 * 109.46994 * 294.57609 * 8 6 2 10 10 H 1.08997 * 109.62366 * 58.21598 * 9 8 6 11 11 O 1.43749 * 109.62756 * 297.97462 * 9 8 6 12 12 C 1.44785 * 104.81456 * 215.80256 * 11 9 8 13 13 C 1.54916 * 101.71891 * 36.10827 * 12 11 9 14 14 H 1.09000 * 110.69612 * 82.83001 * 13 12 11 15 15 C 1.50701 * 110.69860 * 206.04140 * 13 12 11 16 16 H 1.08001 * 119.99540 * 355.10687 * 15 13 12 17 17 C 1.37870 * 120.00415 * 175.11265 * 15 13 12 18 18 N 1.31513 * 120.00118 * 179.97438 * 17 15 13 19 19 Si 1.86805 * 119.99900 * 359.97438 * 17 15 13 20 20 H 1.48501 * 109.46783 * 90.00652 * 19 17 15 21 21 H 1.48501 * 109.47290 * 210.00243 * 19 17 15 22 22 H 1.48499 * 109.47182 * 330.00995 * 19 17 15 23 23 O 1.43356 * 109.63130 * 178.61091 * 9 8 6 24 24 H 1.09000 * 109.46877 * 304.43948 * 1 2 3 25 25 H 1.08991 * 109.47441 * 64.43937 * 1 2 3 26 26 H 1.08998 * 109.47040 * 184.44292 * 1 2 3 27 27 H 1.09000 * 109.88910 * 242.66081 * 3 2 1 28 28 H 1.08994 * 109.89489 * 3.85608 * 3 2 1 29 29 H 1.09001 * 110.70192 * 140.66238 * 4 3 2 30 30 H 1.08998 * 110.70530 * 263.89330 * 4 3 2 31 31 H 1.08997 * 110.98906 * 206.25688 * 5 4 3 32 32 H 1.09004 * 110.99531 * 82.43661 * 5 4 3 33 33 H 1.08998 * 109.47170 * 54.57636 * 8 6 2 34 34 H 1.08999 * 109.47117 * 174.57908 * 8 6 2 35 35 H 1.08999 * 110.98270 * 277.99938 * 12 11 9 36 36 H 1.09000 * 111.00909 * 154.22403 * 12 11 9 37 37 H 0.97004 * 120.00096 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3766 0.0000 4 6 2.9158 1.5137 1.2325 5 6 3.3047 0.0444 1.5438 6 6 1.9988 -0.7076 1.1850 7 1 1.2890 -0.6502 2.0101 8 6 2.3020 -2.1676 0.8422 9 6 0.9974 -2.8951 0.5108 10 1 0.5013 -2.3962 -0.3217 11 8 0.1338 -2.8855 1.6599 12 6 -0.5438 -4.1645 1.6246 13 6 0.5716 -5.0968 1.0893 14 1 1.2289 -5.4150 1.8984 15 6 -0.0232 -6.2886 0.3843 16 1 -1.0932 -6.4349 0.3801 17 6 0.7986 -7.1923 -0.2551 18 7 0.2796 -8.2326 -0.8698 19 14 2.6494 -6.9390 -0.2483 20 1 3.2376 -7.6184 0.9340 21 1 3.2320 -7.5112 -1.4886 22 1 2.9499 -5.4861 -0.1846 23 8 1.2808 -4.2553 0.1575 24 1 -0.3633 0.5812 0.8475 25 1 -0.3634 0.4434 -0.9270 26 1 -0.3633 -1.0246 0.0796 27 1 2.5696 1.5541 -0.9105 28 1 1.1755 2.0892 0.0689 29 1 3.8000 2.1034 0.9905 30 1 2.3744 1.9547 2.0695 31 1 3.5495 -0.0796 2.5986 32 1 4.1302 -0.2833 0.9118 33 1 2.9692 -2.2076 -0.0188 34 1 2.7801 -2.6493 1.6951 35 1 -1.3920 -4.1380 0.9405 36 1 -0.8596 -4.4672 2.6229 37 1 0.8578 -8.8682 -1.3200 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258955040.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:30 Heat of formation + Delta-G solvation = -83.402237 kcal Electronic energy + Delta-G solvation = -18364.175040 eV Core-core repulsion = 15527.618527 eV Total energy + Delta-G solvation = -2836.556513 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.73476 -38.65288 -34.10797 -32.82714 -32.07859 -31.93444 -29.21006 -26.41732 -25.50752 -24.74651 -21.86295 -21.14815 -20.83314 -19.77982 -17.09246 -16.63097 -16.00556 -15.71530 -15.16247 -14.94589 -14.13787 -13.96931 -13.49180 -13.11600 -12.89854 -12.78719 -12.61233 -12.49794 -12.17297 -11.72893 -11.59203 -11.24340 -11.15383 -11.03173 -10.83154 -10.70115 -10.64466 -10.26122 -9.77536 -9.52819 -9.17904 -8.62959 -8.34806 -8.23114 -6.17495 -4.28489 3.36104 3.41891 3.67549 4.00487 4.41153 4.49143 4.54966 4.64347 4.90167 4.93752 5.25166 5.36185 5.43760 5.46921 5.52805 5.58320 5.65851 5.67163 5.79374 5.84480 5.88205 5.94813 6.03577 6.08444 6.09224 6.19238 6.27350 6.38880 6.55632 6.65773 7.05848 7.09215 7.16166 7.55099 8.18207 8.33493 8.80596 9.45218 10.92530 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.037781 B = 0.006563 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.926608 B = 4265.265033 C = 4591.547168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.530 5.530 3 C 0.042 3.958 4 C -0.142 4.142 5 C -0.126 4.126 6 C 0.077 3.923 7 H 0.063 0.937 8 C -0.112 4.112 9 C 0.223 3.777 10 H 0.075 0.925 11 O -0.402 6.402 12 C 0.033 3.967 13 C 0.149 3.851 14 H 0.040 0.960 15 C -0.531 4.531 16 H 0.081 0.919 17 C 0.088 3.912 18 N -0.888 5.888 19 Si 0.869 3.131 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.222 1.222 23 O -0.384 6.384 24 H 0.024 0.976 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 17.442 4.352 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.255 5.255 3 C -0.086 4.086 4 C -0.180 4.180 5 C -0.164 4.164 6 C -0.031 4.031 7 H 0.081 0.919 8 C -0.151 4.151 9 C 0.127 3.873 10 H 0.092 0.908 11 O -0.323 6.323 12 C -0.043 4.043 13 C 0.094 3.906 14 H 0.057 0.943 15 C -0.568 4.568 16 H 0.099 0.901 17 C -0.118 4.118 18 N -0.525 5.525 19 Si 0.695 3.305 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.145 1.145 23 O -0.306 6.306 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.382 17.142 3.775 18.091 hybrid contribution 0.426 0.294 0.600 0.792 sum 4.808 17.436 4.375 18.608 Atomic orbital electron populations 1.22725 0.87502 1.03155 1.00080 1.63469 1.08112 1.13326 1.40578 1.22820 0.97752 0.89734 0.98264 1.22769 0.99802 0.97346 0.98119 1.22758 0.97813 0.94272 1.01535 1.22537 0.95441 0.93868 0.91256 0.91859 1.21945 0.97689 0.92964 1.02488 1.23961 0.89216 0.87220 0.86880 0.90779 1.89021 1.57777 1.37642 1.47870 1.24314 0.96822 0.81444 1.01716 1.21689 0.88827 0.90345 0.89759 0.94272 1.20888 0.95517 1.03846 1.36560 0.90074 1.25005 0.99778 0.93897 0.93089 1.69913 1.36358 1.12650 1.33533 0.86983 0.84729 0.81602 0.77196 1.20936 1.21526 1.14505 1.89296 1.71902 1.13561 1.55858 0.95772 0.91752 0.89961 0.90689 0.92994 0.90926 0.91728 0.90913 0.90518 0.89990 0.91165 0.91388 0.89141 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.73 60.06 0.52 0.71 16 2 N -0.53 -7.34 4.92 -231.60 -1.14 -8.48 16 3 C 0.04 0.47 6.90 -2.83 -0.02 0.45 16 4 C -0.14 -1.40 6.94 -24.91 -0.17 -1.57 16 5 C -0.13 -1.44 6.50 -24.59 -0.16 -1.60 16 6 C 0.08 1.09 2.47 -66.18 -0.16 0.93 16 7 H 0.06 0.96 7.38 -51.93 -0.38 0.58 16 8 C -0.11 -1.91 5.05 -26.73 -0.14 -2.05 16 9 C 0.22 4.44 3.24 37.16 0.12 4.56 16 10 H 0.08 1.48 5.73 -51.93 -0.30 1.18 16 11 O -0.40 -7.89 10.34 -59.04 -0.61 -8.50 16 12 C 0.03 0.68 7.37 38.17 0.28 0.96 16 13 C 0.15 3.62 2.89 -26.87 -0.08 3.54 16 14 H 0.04 0.95 7.70 -51.93 -0.40 0.55 16 15 C -0.53 -15.03 9.41 -34.44 -0.32 -15.35 16 16 H 0.08 2.42 8.02 -52.49 -0.42 2.00 16 17 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 18 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 19 Si 0.87 21.94 27.12 -169.99 -4.61 17.33 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.22 -5.51 5.37 56.52 0.30 -5.21 16 23 O -0.38 -9.30 7.95 -59.04 -0.47 -9.77 16 24 H 0.02 0.30 8.11 -51.93 -0.42 -0.12 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.08 1.26 4.85 -51.93 -0.25 1.00 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.52 7.57 -51.93 -0.39 0.13 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 36 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 37 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 287.73 15.07 4.34 4.34 Total: -1.00 -30.65 287.73 -7.96 -38.61 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.02 Total: -0.23 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -0.22 Total: -6.97 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -0.37 Total: -34.81 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -1.08 Total: -18.27 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.61 Total: 17.33 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.65 -7.96 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258955040.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.792 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds