Wall clock time and date at job start Mon Mar 30 2020 04:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47183 * 2 1 4 4 C 1.34227 * 117.00017 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00203 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99982 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.53117 * 60.10442 * 6 4 3 8 8 C 1.53034 * 109.50413 * 300.00048 * 6 4 3 9 9 N 1.46847 * 109.51345 * 180.87642 * 8 6 4 10 10 C 1.46895 * 110.99982 * 185.84805 * 9 8 6 11 11 C 1.46843 * 111.20124 * 61.74903 * 9 8 6 12 12 C 1.53042 * 109.52278 * 298.25596 * 11 9 8 13 13 C 1.53123 * 109.49150 * 180.20219 * 6 4 3 14 14 H 1.09002 * 109.58642 * 57.67470 * 13 6 4 15 15 C 1.50695 * 109.52378 * 297.50581 * 13 6 4 16 16 H 1.08000 * 120.00300 * 0.33099 * 15 13 6 17 17 C 1.37883 * 120.00067 * 180.32805 * 15 13 6 18 18 N 1.31512 * 119.99791 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00005 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47409 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46963 * 120.00171 * 19 17 15 22 22 H 1.48501 * 109.47135 * 240.00143 * 19 17 15 23 23 H 1.09002 * 109.46850 * 300.00337 * 1 2 3 24 24 H 1.08999 * 109.46882 * 60.00034 * 1 2 3 25 25 H 1.08996 * 109.47130 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46871 * 240.00220 * 2 1 3 27 27 H 1.08999 * 109.46882 * 119.99966 * 2 1 3 28 28 H 1.09002 * 109.46271 * 60.86362 * 8 6 4 29 29 H 1.08994 * 109.46242 * 300.88661 * 8 6 4 30 30 H 1.09000 * 109.47319 * 59.99571 * 10 9 8 31 31 H 1.09002 * 109.47520 * 179.97438 * 10 9 8 32 32 H 1.09003 * 109.47227 * 299.99524 * 10 9 8 33 33 H 1.08993 * 109.46313 * 58.27251 * 11 9 8 34 34 H 1.09004 * 109.46429 * 178.24601 * 11 9 8 35 35 H 1.08997 * 109.50758 * 179.11703 * 12 11 9 36 36 H 1.08998 * 109.50897 * 299.20258 * 12 11 9 37 37 H 0.96996 * 119.99901 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5865 3.4704 0.8901 8 6 3.4501 3.6845 -1.2499 9 7 4.0282 5.0344 -1.2613 10 6 3.4892 5.8285 -2.3734 11 6 5.4948 4.9836 -1.3132 12 6 6.0265 4.2751 -0.0652 13 6 5.4499 2.8578 -0.0043 14 1 5.7838 2.2911 -0.8735 15 6 5.9222 2.1756 1.2536 16 1 5.2042 1.8278 1.9815 17 6 7.2711 1.9954 1.4753 18 7 8.1455 2.4193 0.5891 19 14 7.8566 1.1491 3.0343 20 1 6.6835 0.7694 3.8618 21 1 8.6251 -0.0702 2.6768 22 1 8.7266 2.0749 3.8032 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.3624 3.7552 -1.2428 29 1 3.7731 3.1437 -2.1394 30 1 2.4075 5.9123 -2.2693 31 1 3.9336 6.8237 -2.3581 32 1 3.7264 5.3388 -3.3179 33 1 5.8080 4.4368 -2.2025 34 1 5.8922 5.9979 -1.3519 35 1 7.1143 4.2236 -0.1116 36 1 5.7259 4.8293 0.8239 37 1 9.0944 2.2922 0.7448 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260205598.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:28 Heat of formation + Delta-G solvation = -111.339489 kcal Electronic energy + Delta-G solvation = -18363.216777 eV Core-core repulsion = 15525.448815 eV Total energy + Delta-G solvation = -2837.767963 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.60804 -39.56449 -37.51505 -35.63224 -33.54606 -32.59657 -31.64772 -28.59185 -26.29414 -25.25148 -23.81982 -23.13439 -21.85211 -20.41444 -18.57422 -18.47504 -17.53957 -17.23753 -16.55790 -15.98573 -15.88465 -15.30574 -14.94548 -14.54783 -14.47420 -14.18411 -13.66802 -13.40172 -13.27602 -12.94009 -12.87711 -12.76666 -12.56412 -12.48538 -12.34350 -12.19585 -11.95186 -11.57139 -11.44077 -11.30535 -10.97925 -10.72928 -10.38700 -9.25190 -8.07382 -6.15276 1.36235 1.37032 1.38695 1.48962 1.81561 2.43675 3.07753 3.21367 3.86936 4.01485 4.05719 4.08401 4.17705 4.35369 4.39940 4.42230 4.52745 4.66912 4.71769 4.83158 4.88616 4.90365 4.95978 5.00853 5.07893 5.16349 5.19425 5.41004 5.55776 5.60290 5.92041 5.96512 6.21406 6.25148 6.34896 6.87115 6.98468 7.48219 8.98559 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.015777 B = 0.010554 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.264959 B = 2652.312747 C = 4226.740437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.048 3.952 3 O -0.362 6.362 4 C 0.467 3.533 5 O -0.520 6.520 6 C -0.065 4.065 7 H 0.106 0.894 8 C 0.079 3.921 9 N -0.546 5.546 10 C 0.026 3.974 11 C 0.062 3.938 12 C -0.098 4.098 13 C 0.066 3.934 14 H -0.011 1.011 15 C -0.503 4.503 16 H 0.038 0.962 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 0.946 3.054 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.272 1.272 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.021 0.979 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.023 0.977 33 H 0.015 0.985 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.683 2.901 -4.253 14.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 O -0.280 6.280 4 C 0.309 3.691 5 O -0.407 6.407 6 C -0.085 4.085 7 H 0.124 0.876 8 C -0.049 4.049 9 N -0.270 5.270 10 C -0.122 4.122 11 C -0.066 4.066 12 C -0.136 4.136 13 C 0.048 3.952 14 H 0.007 0.993 15 C -0.541 4.541 16 H 0.056 0.944 17 C -0.185 4.185 18 N -0.559 5.559 19 Si 0.773 3.227 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.119 0.881 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.039 0.961 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.042 0.958 33 H 0.033 0.967 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.438 2.822 -3.852 14.261 hybrid contribution 1.186 -1.427 0.097 1.858 sum -12.252 1.395 -3.755 12.890 Atomic orbital electron populations 1.21788 0.89557 1.04357 1.03877 1.23254 0.97584 0.79924 1.01817 1.86513 1.23998 1.33171 1.84298 1.24034 0.80259 0.93122 0.71668 1.90665 1.61071 1.43941 1.45010 1.21239 0.97843 0.88019 1.01360 0.87593 1.21899 1.00312 0.88740 0.93980 1.61923 1.06371 1.13221 1.45526 1.22448 1.01505 0.97830 0.90388 1.22154 0.87121 1.00283 0.97004 1.21474 1.01532 0.94955 0.95650 1.18512 0.87587 0.93734 0.95390 0.99251 1.21255 0.91717 1.36431 1.04706 0.94374 1.25571 0.97130 0.96473 0.99349 1.69978 1.01552 1.48255 1.36107 0.85683 0.78116 0.78426 0.80486 1.19971 1.21238 1.19785 0.91221 0.90800 0.88147 0.91955 0.92539 0.87901 0.96101 0.89648 0.90073 0.95814 0.96652 0.89714 0.91136 0.93800 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 10.29 71.98 0.74 -1.81 16 2 C 0.05 1.36 6.19 71.98 0.45 1.81 16 3 O -0.36 -12.65 10.14 -51.39 -0.52 -13.17 16 4 C 0.47 20.22 6.85 71.24 0.49 20.71 16 5 O -0.52 -26.86 14.60 21.96 0.32 -26.54 16 6 C -0.07 -2.77 2.26 -11.49 -0.03 -2.80 16 7 H 0.11 4.43 8.14 -2.39 -0.02 4.41 16 8 C 0.08 2.73 4.68 86.32 0.40 3.14 16 9 N -0.55 -17.93 4.91 -922.61 -4.53 -22.46 16 10 C 0.03 0.61 9.59 127.69 1.22 1.84 16 11 C 0.06 2.33 5.46 86.33 0.47 2.80 16 12 C -0.10 -4.62 5.12 30.65 0.16 -4.46 16 13 C 0.07 3.44 1.32 -11.46 -0.02 3.42 16 14 H -0.01 -0.64 8.05 -2.39 -0.02 -0.65 16 15 C -0.50 -29.10 7.09 25.60 0.18 -28.91 16 16 H 0.04 2.25 7.45 -2.91 -0.02 2.22 16 17 C 0.01 0.72 5.30 84.66 0.45 1.17 16 18 N -0.92 -54.65 11.35 21.45 0.24 -54.41 16 19 Si 0.95 46.40 29.54 68.60 2.03 48.42 16 20 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 27 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 28 H 0.10 2.97 8.11 -2.39 -0.02 2.95 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 1.70 8.09 -2.39 -0.02 1.68 16 32 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 2.78 8.09 -2.38 -0.02 2.76 16 35 H 0.07 3.76 6.15 -2.39 -0.01 3.75 16 36 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -68.44 299.80 3.08 -65.36 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.02 Total: 5.90 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 4.52 Total: -3.10 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -4.29 Total: -76.87 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -0.20 Total: -39.71 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -68.44 3.08 -65.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260205598.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.981 kcal (2) G-P(sol) polarization free energy of solvation -68.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds