Wall clock time and date at job start Mon Mar 30 2020 03:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.46973 * 2 1 4 4 C 1.46841 * 110.99970 * 169.99888 * 3 2 1 5 5 C 1.53180 * 109.45478 * 185.45991 * 4 3 2 6 6 H 1.08997 * 110.41372 * 179.21187 * 5 4 3 7 7 C 1.53240 * 109.00545 * 58.29647 * 5 4 3 8 8 O 1.42888 * 109.40275 * 299.88848 * 7 5 4 9 9 C 1.42889 * 114.29647 * 299.37562 * 8 7 5 10 10 C 1.53232 * 109.34420 * 60.66610 * 9 8 7 11 11 H 1.08996 * 109.93997 * 181.21087 * 10 9 8 12 12 C 1.47018 * 111.01071 * 294.48572 * 3 2 1 13 13 C 1.53435 * 108.76064 * 299.92745 * 5 4 3 14 14 O 1.42901 * 109.72504 * 179.46412 * 13 5 4 15 15 C 1.50701 * 109.72667 * 300.08530 * 13 5 4 16 16 H 1.08002 * 119.99761 * 119.37412 * 15 13 5 17 17 C 1.37871 * 119.99694 * 299.65975 * 15 13 5 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 13 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 13 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 H 1.08996 * 109.47286 * 299.99859 * 1 2 3 24 24 H 1.08998 * 109.46889 * 60.00197 * 1 2 3 25 25 H 1.08997 * 109.46940 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47260 * 239.99584 * 2 1 3 27 27 H 1.08998 * 109.46889 * 119.99803 * 2 1 3 28 28 H 1.09000 * 109.47199 * 65.46363 * 4 3 2 29 29 H 1.09002 * 109.47069 * 305.46150 * 4 3 2 30 30 H 1.09010 * 109.44556 * 179.97438 * 7 5 4 31 31 H 1.08995 * 109.50719 * 59.90281 * 7 5 4 32 32 H 1.09007 * 109.49060 * 300.70460 * 9 8 7 33 33 H 1.08998 * 109.51335 * 180.64358 * 9 8 7 34 34 H 1.09001 * 109.51548 * 54.55659 * 12 3 2 35 35 H 1.09004 * 109.44343 * 294.54526 * 12 3 2 36 36 H 0.96709 * 113.99570 * 60.62333 * 14 13 5 37 37 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4679 1.4311 0.2381 5 6 3.9176 2.8898 0.3667 6 1 4.9894 2.9418 0.5578 7 6 3.1482 3.5497 1.5159 8 8 1.7473 3.5016 1.2387 9 6 1.3604 4.1844 0.0446 10 6 2.0655 3.5455 -1.1565 11 1 1.7938 4.0730 -2.0708 12 6 1.6590 2.0716 -1.2490 13 6 3.5821 3.6263 -0.9369 14 8 3.9822 4.9944 -0.8346 15 6 4.2985 2.9718 -2.0898 16 1 3.7329 2.5481 -2.9066 17 6 5.6757 2.9087 -2.0991 18 7 6.3645 3.4246 -1.1046 19 14 6.5636 2.0904 -3.5245 20 1 5.5681 1.5930 -4.5077 21 1 7.4589 3.0763 -4.1816 22 1 7.3695 0.9510 -3.0173 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9885 0.9626 -0.5971 29 1 3.7020 0.8961 1.1584 30 1 3.4632 4.5887 1.6141 31 1 3.3538 3.0174 2.4445 32 1 1.6451 5.2341 0.1174 33 1 0.2808 4.1084 -0.0847 34 1 0.5827 2.0007 -1.4058 35 1 2.1796 1.6027 -2.0841 36 1 4.9299 5.1168 -0.6853 37 1 7.3334 3.3799 -1.1110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260959135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:52 Heat of formation + Delta-G solvation = -82.965051 kcal Electronic energy + Delta-G solvation = -19707.946859 eV Core-core repulsion = 16871.409305 eV Total energy + Delta-G solvation = -2836.537555 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.77586 -35.98626 -35.19147 -32.25842 -31.78458 -31.50114 -28.61739 -26.09926 -25.75709 -23.36024 -22.31996 -21.20310 -20.47438 -17.68976 -16.62246 -15.88475 -15.17403 -14.85798 -14.58874 -14.28740 -14.08175 -13.66028 -13.47531 -13.07418 -12.67508 -12.32302 -11.79775 -11.62370 -11.36670 -11.28798 -11.05725 -10.89894 -10.75874 -10.60537 -10.46663 -10.12103 -10.00716 -9.87710 -9.47751 -9.01507 -8.61704 -8.52495 -7.90079 -7.18787 -6.20335 -4.30029 3.16853 3.26438 3.29967 4.27010 4.66526 4.96639 5.03427 5.44365 5.65881 5.69694 5.80496 5.88475 5.97787 6.05219 6.12776 6.20101 6.32167 6.37202 6.42051 6.45645 6.52438 6.54648 6.59581 6.65560 6.76748 6.83928 7.01937 7.25937 7.35529 7.47024 7.80910 8.01443 8.05071 8.14915 8.34446 8.70534 9.36504 9.49807 10.81920 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025271 B = 0.011478 C = 0.009488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.713564 B = 2438.867848 C = 2950.526313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 N -0.516 5.516 4 C 0.084 3.916 5 C -0.138 4.138 6 H 0.109 0.891 7 C 0.077 3.923 8 O -0.363 6.363 9 C 0.082 3.918 10 C -0.105 4.105 11 H 0.071 0.929 12 C 0.078 3.922 13 C 0.260 3.740 14 O -0.591 6.591 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.894 3.106 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.283 1.283 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.021 0.979 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.380 0.620 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.260 -3.335 2.521 7.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 N -0.241 5.241 4 C -0.044 4.044 5 C -0.158 4.158 6 H 0.126 0.874 7 C 0.000 4.000 8 O -0.281 6.281 9 C 0.005 3.995 10 C -0.124 4.124 11 H 0.089 0.911 12 C -0.050 4.050 13 C 0.220 3.780 14 O -0.400 6.400 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.131 4.131 18 N -0.539 5.539 19 Si 0.722 3.278 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.210 1.210 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.230 0.770 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.076 -3.067 2.987 8.270 hybrid contribution 1.924 -0.934 -1.626 2.687 sum -5.152 -4.000 1.361 6.663 Atomic orbital electron populations 1.21760 0.95758 1.00276 1.02317 1.21975 0.95454 0.90652 0.99613 1.62009 1.14669 1.12726 1.34663 1.21842 0.86326 0.97401 0.98834 1.22524 1.01878 0.94173 0.97224 0.87353 1.22411 0.81952 0.98426 0.97169 1.87815 1.23045 1.76117 1.41146 1.22273 0.97222 0.94489 0.85508 1.21810 0.97458 0.94988 0.98171 0.91092 1.21940 0.98375 0.94089 0.90609 1.18642 0.88455 0.79777 0.91133 1.86095 1.30475 1.27789 1.95646 1.21727 0.91558 1.37064 1.06103 0.92322 1.24956 0.97470 0.94769 0.95858 1.69581 1.07226 1.46183 1.30897 0.86507 0.79657 0.79181 0.82489 1.19847 1.20810 1.20951 0.91961 0.92990 0.93405 0.96087 0.91780 0.94153 0.93360 0.94567 0.91409 0.94122 0.91284 0.92348 0.94475 0.76988 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.84 37.16 0.37 -1.64 16 2 C 0.05 0.85 5.68 -3.82 -0.02 0.82 16 3 N -0.52 -10.02 2.89 -234.35 -0.68 -10.69 16 4 C 0.08 1.77 4.71 -3.76 -0.02 1.76 16 5 C -0.14 -3.13 2.40 -90.18 -0.22 -3.35 16 6 H 0.11 2.69 6.21 -51.93 -0.32 2.37 16 7 C 0.08 1.62 6.11 37.28 0.23 1.85 16 8 O -0.36 -7.63 9.03 -35.23 -0.32 -7.95 16 9 C 0.08 1.65 6.11 37.28 0.23 1.88 16 10 C -0.11 -2.26 2.63 -90.18 -0.24 -2.50 16 11 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 12 C 0.08 1.54 4.53 -3.67 -0.02 1.53 16 13 C 0.26 6.23 0.45 -91.31 -0.04 6.19 16 14 O -0.59 -15.00 11.72 -35.23 -0.41 -15.41 16 15 C -0.53 -13.63 6.27 -34.44 -0.22 -13.84 16 16 H 0.06 1.55 6.73 -52.49 -0.35 1.20 16 17 C 0.07 1.81 5.23 -17.82 -0.09 1.72 16 18 N -0.90 -23.16 9.79 55.43 0.54 -22.62 16 19 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.73 6.43 -51.93 -0.33 0.39 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.35 8.13 -51.93 -0.42 -0.07 16 27 H 0.06 1.00 7.99 -51.93 -0.42 0.58 16 28 H 0.04 0.94 7.18 -51.93 -0.37 0.57 16 29 H 0.05 0.96 8.02 -51.93 -0.42 0.54 16 30 H 0.04 0.77 7.73 -51.92 -0.40 0.37 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.04 0.84 7.72 -51.93 -0.40 0.44 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.04 6.23 -51.93 -0.32 0.71 16 35 H 0.04 0.80 6.60 -51.93 -0.34 0.45 16 36 H 0.38 9.83 7.19 45.56 0.33 10.16 16 37 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 273.41 15.07 4.12 4.12 Total: -1.00 -26.53 273.41 -6.83 -33.36 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.02 Total: 9.36 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.04 Total: -5.59 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: -0.13 Total: -33.31 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.73 Total: -23.36 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -26.53 -6.83 -33.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.605 kcal (2) G-P(sol) polarization free energy of solvation -26.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds