Wall clock time and date at job start Mon Mar 30 2020 03:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47073 * 2 1 4 4 C 1.53006 * 109.47384 * 240.00056 * 2 1 3 5 5 H 1.09000 * 109.39612 * 179.55727 * 4 2 1 6 6 C 1.53024 * 109.39280 * 59.74232 * 4 2 1 7 7 O 1.43249 * 108.66986 * 190.70229 * 6 4 2 8 8 C 1.42963 * 112.98745 * 68.35859 * 7 6 4 9 9 C 1.50353 * 109.81243 * 310.40614 * 8 7 6 10 10 O 1.21279 * 118.83009 * 195.89702 * 9 8 7 11 11 N 1.33744 * 122.29418 * 15.98303 * 9 8 7 12 12 C 1.46500 * 118.63395 * 178.06941 * 11 9 8 13 13 H 1.09010 * 109.46807 * 184.70283 * 12 11 9 14 14 C 1.52996 * 109.47506 * 64.70609 * 12 11 9 15 15 C 1.50696 * 109.47307 * 304.69864 * 12 11 9 16 16 H 1.08004 * 119.99993 * 0.02562 * 15 12 11 17 17 C 1.37879 * 120.00259 * 180.02562 * 15 12 11 18 18 N 1.31512 * 119.99714 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00077 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47115 * 89.99603 * 19 17 15 21 21 H 1.48497 * 109.47105 * 209.99913 * 19 17 15 22 22 H 1.48502 * 109.47274 * 329.99814 * 19 17 15 23 23 H 1.09003 * 109.47130 * 59.99881 * 1 2 3 24 24 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47031 * 300.00040 * 1 2 3 26 26 H 1.08990 * 109.47313 * 119.99934 * 2 1 3 27 27 H 1.09002 * 109.47187 * 175.52913 * 3 2 1 28 28 H 1.09008 * 109.47124 * 295.52418 * 3 2 1 29 29 H 1.08996 * 109.47488 * 55.52264 * 3 2 1 30 30 H 1.09001 * 109.60527 * 310.45304 * 6 4 2 31 31 H 1.08996 * 109.60776 * 70.94803 * 6 4 2 32 32 H 1.09005 * 109.41613 * 70.50827 * 8 7 6 33 33 H 1.09000 * 109.41340 * 190.36915 * 8 7 6 34 34 H 1.09010 * 109.46821 * 299.99665 * 14 12 11 35 35 H 1.08998 * 109.47572 * 59.99253 * 14 12 11 36 36 H 1.08996 * 109.47201 * 180.02562 * 14 12 11 37 37 H 0.97004 * 119.99459 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 1 3.1300 -0.7136 -1.2520 6 6 1.5237 -0.0023 -2.4975 7 8 1.7935 -0.8200 -3.6423 8 6 1.0162 -2.0196 -3.6671 9 6 1.1130 -2.7172 -2.3388 10 8 0.7683 -3.8774 -2.2609 11 7 1.5645 -2.1025 -1.2401 12 6 1.5849 -2.8460 0.0221 13 1 1.8980 -2.1833 0.8290 14 6 2.5675 -4.0134 -0.0894 15 6 0.2052 -3.3768 0.3149 16 1 -0.6057 -3.1804 -0.3709 17 6 -0.0219 -4.1132 1.4582 18 7 0.9657 -4.3528 2.2930 19 14 -1.7319 -4.7717 1.8207 20 1 -1.8801 -6.1218 1.2201 21 1 -1.9274 -4.8594 3.2901 22 1 -2.7479 -3.8575 1.2400 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.1270 1.4436 0.0801 28 1 1.7436 1.9327 -0.9274 29 1 1.6126 1.9790 0.8471 30 1 0.4494 0.1593 -2.4085 31 1 2.0324 0.9558 -2.6045 32 1 -0.0256 -1.7722 -3.8712 33 1 1.3920 -2.6787 -4.4497 34 1 2.2544 -4.6760 -0.8963 35 1 3.5654 -3.6295 -0.3012 36 1 2.5823 -4.5667 0.8495 37 1 0.8059 -4.8712 3.0972 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261037922.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:51 Heat of formation + Delta-G solvation = -94.176434 kcal Electronic energy + Delta-G solvation = -19201.902842 eV Core-core repulsion = 16364.879126 eV Total energy + Delta-G solvation = -2837.023717 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.77644 -38.74099 -37.82929 -35.70323 -34.09607 -31.33258 -30.12098 -28.08696 -27.36612 -27.09253 -25.60343 -22.96797 -21.12214 -19.37300 -19.03596 -18.19203 -17.46100 -16.67398 -16.47373 -16.23465 -15.59684 -15.30445 -14.90756 -14.74025 -14.61823 -14.06068 -13.60956 -13.48355 -13.13488 -12.94985 -12.81662 -12.66035 -12.53165 -12.41617 -12.30394 -12.10017 -11.79256 -11.70120 -11.57850 -11.16084 -10.96005 -10.53874 -9.90735 -9.30954 -8.10308 -6.15851 1.34800 1.38750 1.45846 1.82769 2.21586 2.44578 2.86432 3.17910 3.53798 3.80751 3.95446 4.05012 4.24534 4.37435 4.38003 4.50794 4.60184 4.75041 4.82394 4.89074 4.91573 4.96358 5.10639 5.13687 5.19933 5.26861 5.39136 5.48990 5.59864 5.70904 5.82493 5.87585 6.08262 6.21844 6.78215 6.95210 7.39472 7.56968 8.94500 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.010175 C = 0.008750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.518998 B = 2751.074890 C = 3199.336124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C -0.137 4.137 4 C 0.109 3.891 5 H 0.075 0.925 6 C 0.048 3.952 7 O -0.377 6.377 8 C 0.058 3.942 9 C 0.463 3.537 10 O -0.576 6.576 11 N -0.587 5.587 12 C 0.272 3.728 13 H 0.042 0.958 14 C -0.143 4.143 15 C -0.488 4.488 16 H 0.039 0.961 17 C 0.013 3.987 18 N -0.919 5.919 19 Si 0.948 3.052 20 H -0.289 1.289 21 H -0.277 1.277 22 H -0.271 1.271 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.027 0.973 35 H 0.020 0.980 36 H 0.066 0.934 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 13.391 -7.441 15.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.119 4.119 3 C -0.195 4.195 4 C 0.005 3.995 5 H 0.093 0.907 6 C -0.028 4.028 7 O -0.295 6.295 8 C -0.022 4.022 9 C 0.251 3.749 10 O -0.457 6.457 11 N -0.319 5.319 12 C 0.170 3.830 13 H 0.059 0.941 14 C -0.202 4.202 15 C -0.527 4.527 16 H 0.057 0.943 17 C -0.185 4.185 18 N -0.560 5.560 19 Si 0.775 3.225 20 H -0.215 1.215 21 H -0.203 1.203 22 H -0.196 1.196 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.164 0.836 32 H 0.118 0.882 33 H 0.153 0.847 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.085 0.915 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.531 12.787 -7.376 14.841 hybrid contribution -0.951 -1.156 0.854 1.723 sum 0.580 11.630 -6.523 13.347 Atomic orbital electron populations 1.21933 0.95135 1.02218 1.01594 1.21355 0.96611 0.97514 0.96416 1.21823 1.01421 0.92935 1.03305 1.21932 0.98940 0.80949 0.97667 0.90718 1.23396 1.02124 0.94748 0.82579 1.88103 1.64509 1.32397 1.44533 1.22846 0.98815 0.86736 0.93787 1.21472 0.77999 0.87704 0.87770 1.90701 1.50005 1.18827 1.86155 1.47940 1.61204 1.13242 1.09464 1.18577 0.94376 0.89230 0.80812 0.94083 1.21966 0.95916 1.00672 1.01629 1.21235 0.94556 1.32268 1.04653 0.94264 1.25481 1.00021 0.96685 0.96334 1.69960 1.32070 1.41259 1.12724 0.85714 0.81248 0.78439 0.77134 1.21520 1.20271 1.19622 0.91329 0.93705 0.92687 0.92683 0.91753 0.90298 0.91803 0.90946 0.83585 0.88198 0.84673 0.95421 0.96139 0.91522 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 8.66 71.98 0.62 -4.11 16 2 C -0.10 -2.92 2.31 -10.79 -0.02 -2.94 16 3 C -0.14 -2.65 8.98 71.98 0.65 -2.01 16 4 C 0.11 3.35 2.80 45.08 0.13 3.48 16 5 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 6 C 0.05 1.12 5.39 71.99 0.39 1.51 16 7 O -0.38 -10.31 10.85 -148.98 -1.62 -11.93 16 8 C 0.06 1.74 6.98 71.13 0.50 2.24 16 9 C 0.46 19.71 6.81 87.71 0.60 20.31 16 10 O -0.58 -30.28 13.64 -3.03 -0.04 -30.32 16 11 N -0.59 -24.47 2.10 -781.06 -1.64 -26.11 16 12 C 0.27 13.74 1.86 44.24 0.08 13.83 16 13 H 0.04 2.16 5.60 -2.38 -0.01 2.14 16 14 C -0.14 -7.58 8.94 71.98 0.64 -6.94 16 15 C -0.49 -27.48 5.74 25.60 0.15 -27.33 16 16 H 0.04 2.31 6.88 -2.91 -0.02 2.29 16 17 C 0.01 0.72 5.30 84.66 0.45 1.17 16 18 N -0.92 -53.47 11.32 21.45 0.24 -53.23 16 19 Si 0.95 46.09 29.54 68.60 2.03 48.11 16 20 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 23 H 0.07 1.73 6.20 -2.39 -0.01 1.72 16 24 H 0.04 1.83 5.29 -2.39 -0.01 1.82 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.99 6.06 -2.39 -0.01 1.98 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.14 6.46 -2.38 -0.02 1.12 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.65 5.88 -2.39 -0.01 1.64 16 31 H 0.15 2.31 6.96 -2.39 -0.02 2.29 16 32 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 33 H 0.14 3.63 8.14 -2.39 -0.02 3.62 16 34 H 0.03 1.54 6.29 -2.38 -0.01 1.52 16 35 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 37 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -69.14 279.55 4.21 -64.93 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.06 Total: 9.35 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 4.17 Total: -0.80 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -1.40 Total: -79.34 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -1.66 Total: -42.25 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -69.14 4.21 -64.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261037922.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.243 kcal (2) G-P(sol) polarization free energy of solvation -69.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds