Wall clock time and date at job start Mon Mar 30 2020 03:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.46687 * 2 1 4 4 C 1.50696 * 109.47112 * 120.00393 * 2 1 3 5 5 H 1.07998 * 120.00088 * 120.00284 * 4 2 1 6 6 C 1.37877 * 119.99550 * 299.99968 * 4 2 1 7 7 N 1.31511 * 120.00539 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99686 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46738 * 60.00630 * 8 6 4 10 10 H 1.48503 * 109.47154 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.47480 * 300.00111 * 8 6 4 12 12 N 1.46905 * 109.47070 * 240.00578 * 2 1 3 13 13 C 1.46895 * 111.00107 * 84.99918 * 12 2 1 14 14 H 1.08999 * 110.41237 * 323.96886 * 13 12 2 15 15 C 1.54352 * 110.46431 * 86.45413 * 13 12 2 16 16 C 1.54109 * 106.56368 * 142.24167 * 15 13 12 17 17 C 1.53216 * 106.33949 * 359.27264 * 16 15 13 18 18 C 1.53844 * 105.39459 * 337.46385 * 17 16 15 19 19 O 1.43303 * 111.40177 * 216.85170 * 17 16 15 20 20 C 1.44512 * 104.42953 * 275.65370 * 19 17 16 21 21 C 1.54238 * 105.12900 * 337.93706 * 20 19 17 22 22 O 1.43151 * 111.47148 * 98.09164 * 17 16 15 23 23 H 1.09004 * 109.46745 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47447 * 299.99419 * 1 2 3 25 25 H 1.08997 * 109.47140 * 60.00318 * 1 2 3 26 26 H 0.97003 * 120.00414 * 179.97438 * 7 6 4 27 27 H 1.00897 * 110.99614 * 321.04131 * 12 2 1 28 28 H 1.09001 * 110.03849 * 22.96361 * 15 13 12 29 29 H 1.09002 * 110.03617 * 261.51837 * 15 13 12 30 30 H 1.08994 * 110.08188 * 240.05184 * 16 15 13 31 31 H 1.08999 * 110.13135 * 118.51778 * 16 15 13 32 32 H 1.09001 * 110.76633 * 155.05573 * 18 17 16 33 33 H 1.08995 * 110.76846 * 278.46519 * 18 17 16 34 34 H 1.09002 * 110.32892 * 218.99212 * 20 19 17 35 35 H 1.09002 * 110.32678 * 96.87663 * 20 19 17 36 36 H 1.08995 * 110.32991 * 118.84165 * 21 20 19 37 37 H 1.09009 * 110.32466 * 240.95350 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9428 0.8295 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8259 -0.4208 5.2204 11 1 1.8259 -2.5203 4.0076 12 7 2.0198 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 1 1.2530 0.9291 -2.3156 15 6 3.4308 0.9740 -2.3648 16 6 3.8472 1.0942 -3.8437 17 6 2.7511 0.3990 -4.6579 18 6 2.0684 -0.5715 -3.6788 19 8 3.2992 -0.3017 -5.7814 20 6 3.4201 0.7059 -6.8102 21 6 2.4219 1.8115 -6.4101 22 8 1.8131 1.3423 -5.1865 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7081 1.1607 3.4844 27 1 1.4497 -1.4978 -1.4101 28 1 4.1804 0.4094 -1.8103 29 1 3.3114 1.9658 -1.9286 30 1 4.8043 0.5982 -4.0044 31 1 3.9171 2.1436 -4.1297 32 1 1.0459 -0.7816 -3.9927 33 1 2.6423 -1.4934 -3.5851 34 1 3.1542 0.2891 -7.7816 35 1 4.4351 1.1027 -6.8341 36 1 2.9468 2.7507 -6.2359 37 1 1.6668 1.9388 -7.1860 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306634692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:09 Heat of formation + Delta-G solvation = -94.149658 kcal Electronic energy + Delta-G solvation = -18073.007958 eV Core-core repulsion = 15235.985402 eV Total energy + Delta-G solvation = -2837.022556 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.84463 -37.22792 -35.05383 -34.43703 -31.93199 -29.99310 -28.83458 -27.13382 -25.21706 -24.91202 -23.19498 -20.80538 -20.35295 -19.33898 -16.68900 -16.59575 -16.43167 -16.05687 -15.40629 -14.87368 -14.49714 -13.89689 -13.60415 -13.16691 -12.71105 -12.58027 -12.43460 -12.28721 -11.75128 -11.51091 -11.38660 -11.15309 -10.96395 -10.82704 -10.69350 -10.43480 -10.32658 -10.16966 -9.98265 -9.84409 -9.51753 -8.93803 -8.31647 -7.21614 -5.94081 -3.97272 3.37437 3.41110 3.44579 3.56628 3.86212 4.47129 4.48429 4.52529 4.68920 4.76534 5.12995 5.16973 5.35111 5.37929 5.45264 5.48079 5.51552 5.71875 5.77156 5.92857 6.04765 6.20695 6.26469 6.31622 6.58204 6.72941 6.79221 6.89005 7.06741 7.16153 7.45219 7.79022 7.93672 8.33077 8.58655 8.67160 9.09786 9.67858 11.12958 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.054036 B = 0.005024 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.045299 B = 5572.013505 C = 5696.236770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.034 0.966 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.676 5.676 13 C 0.089 3.911 14 H 0.047 0.953 15 C -0.107 4.107 16 C -0.153 4.153 17 C 0.249 3.751 18 C -0.109 4.109 19 O -0.367 6.367 20 C 0.015 3.985 21 C 0.014 3.986 22 O -0.361 6.361 23 H 0.027 0.973 24 H 0.088 0.912 25 H 0.005 0.995 26 H 0.259 0.741 27 H 0.327 0.673 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 1.734 -16.843 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.306 5.306 13 C -0.022 4.022 14 H 0.065 0.935 15 C -0.146 4.146 16 C -0.192 4.192 17 C 0.172 3.828 18 C -0.147 4.147 19 O -0.287 6.287 20 C -0.062 4.062 21 C -0.063 4.063 22 O -0.281 6.281 23 H 0.046 0.954 24 H 0.107 0.893 25 H 0.024 0.976 26 H 0.069 0.931 27 H 0.144 0.856 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.107 1.773 -16.426 17.024 hybrid contribution -0.542 0.003 0.473 0.720 sum 3.564 1.775 -15.953 16.442 Atomic orbital electron populations 1.22441 1.00789 0.99181 1.00492 1.19194 0.89523 0.94456 0.86447 0.94794 1.21124 1.30176 1.12395 0.89620 0.92001 1.24948 0.95372 0.95210 0.99002 1.69878 1.37308 1.23246 1.23369 0.86575 0.79148 0.79609 0.82103 1.20328 1.21519 1.20402 1.60914 1.57926 1.08741 1.03052 1.22214 0.96400 0.94272 0.89334 0.93512 1.22134 0.98338 1.00704 0.93376 1.22810 0.98536 1.00617 0.97203 1.23893 0.86575 0.85625 0.86686 1.22523 1.00948 0.97994 0.93247 1.89194 1.83876 1.32515 1.23143 1.24004 0.99571 0.89209 0.93386 1.24030 0.96690 0.97564 0.87982 1.89187 1.43206 1.58993 1.36718 0.95350 0.89304 0.97598 0.93070 0.85628 0.89848 0.91971 0.90079 0.91325 0.90501 0.88440 0.88858 0.90887 0.90885 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.93 37.16 0.33 -3.84 16 2 C 0.21 5.36 2.43 -68.86 -0.17 5.20 16 3 H 0.03 0.95 7.74 -51.93 -0.40 0.55 16 4 C -0.49 -13.77 8.84 -34.44 -0.30 -14.07 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.05 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.95 11.32 55.43 0.63 -25.32 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.64 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.68 -14.47 6.02 -99.06 -0.60 -15.07 16 13 C 0.09 1.65 2.97 -65.91 -0.20 1.45 16 14 H 0.05 0.95 7.20 -51.93 -0.37 0.58 16 15 C -0.11 -1.85 6.37 -25.44 -0.16 -2.01 16 16 C -0.15 -2.19 5.93 -26.04 -0.15 -2.35 16 17 C 0.25 3.72 1.23 -26.18 -0.03 3.68 16 18 C -0.11 -1.76 5.78 -25.19 -0.15 -1.90 16 19 O -0.37 -5.18 11.21 -59.35 -0.67 -5.85 16 20 C 0.02 0.15 7.68 37.81 0.29 0.44 16 21 C 0.01 0.15 7.49 37.81 0.28 0.43 16 22 O -0.36 -5.38 11.20 -59.35 -0.67 -6.04 16 23 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 24 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 25 H 0.00 0.11 7.45 -51.93 -0.39 -0.27 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 27 H 0.33 6.65 8.21 -39.29 -0.32 6.32 16 28 H 0.08 1.53 8.04 -51.93 -0.42 1.12 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 31 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 37 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 LS Contribution 295.40 15.07 4.45 4.45 Total: -1.00 -30.00 295.40 -8.19 -38.19 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.97 Total: 4.51 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -0.35 Total: -11.52 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.03 Total: -40.39 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -1.33 Total: -11.89 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.00 -8.19 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306634692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.958 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds