Wall clock time and date at job start Mon Mar 30 2020 03:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47176 * 89.99381 * 8 6 4 10 10 H 1.48495 * 109.47439 * 209.99938 * 8 6 4 11 11 H 1.48500 * 109.46731 * 330.00116 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 H 1.09001 * 110.42433 * 34.29624 * 13 12 2 15 15 C 1.54321 * 110.47333 * 271.78842 * 13 12 2 16 16 C 1.54010 * 106.57472 * 217.81222 * 15 13 12 17 17 C 1.53648 * 106.45555 * 0.41447 * 16 15 13 18 18 C 1.54425 * 104.96041 * 22.90766 * 17 16 15 19 19 O 1.43074 * 110.64370 * 264.12962 * 17 16 15 20 20 C 1.44947 * 104.60046 * 213.65666 * 19 17 16 21 21 C 1.54964 * 101.82385 * 35.41991 * 20 19 17 22 22 O 1.42681 * 110.87912 * 142.25898 * 17 16 15 23 23 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 25 25 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 26 26 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 27 27 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 28 28 H 1.09000 * 110.03631 * 337.09290 * 15 13 12 29 29 H 1.08999 * 110.03792 * 98.47927 * 15 13 12 30 30 H 1.08995 * 110.06274 * 119.66753 * 16 15 13 31 31 H 1.09007 * 110.05775 * 241.11433 * 16 15 13 32 32 H 1.08998 * 110.88106 * 204.57202 * 18 17 16 33 33 H 1.09008 * 110.70410 * 81.14712 * 18 17 16 34 34 H 1.09000 * 110.95571 * 277.28398 * 20 19 17 35 35 H 1.09000 * 110.98619 * 153.56830 * 20 19 17 36 36 H 1.09004 * 110.68882 * 206.42697 * 21 20 19 37 37 H 1.09001 * 110.68654 * 83.23520 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6305 -0.5441 4.4118 10 1 1.3445 -0.9491 5.1123 11 1 2.4881 -2.5654 3.7122 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 1 2.3519 1.2265 -2.0185 15 6 0.7330 0.2435 -3.0952 16 6 1.0644 0.3392 -4.5962 17 6 2.5970 0.3620 -4.7030 18 6 3.0973 -0.2946 -3.3979 19 8 3.0763 1.7071 -4.7928 20 6 4.2424 1.6230 -5.6496 21 6 3.8207 0.5191 -6.6522 22 8 3.0387 -0.3811 -5.8380 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.7089 1.1613 3.4844 27 1 1.4495 -1.4979 -1.4101 28 1 0.1794 -0.6733 -2.8926 29 1 0.1475 1.1090 -2.7853 30 1 0.6657 -0.5277 -5.1231 31 1 0.6460 1.2551 -5.0137 32 1 4.1067 0.0391 -3.1573 33 1 3.0561 -1.3813 -3.4729 34 1 5.1220 1.3190 -5.0822 35 1 4.4191 2.5685 -6.1623 36 1 4.6963 0.0109 -7.0562 37 1 3.2135 0.9389 -7.4542 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306634693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:11 Heat of formation + Delta-G solvation = -112.811263 kcal Electronic energy + Delta-G solvation = -18103.464275 eV Core-core repulsion = 15265.632491 eV Total energy + Delta-G solvation = -2837.831784 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.78777 -38.86663 -36.18231 -36.00480 -33.85138 -30.82097 -30.27609 -28.62997 -27.29411 -26.23922 -24.19151 -22.24549 -21.56352 -21.39171 -18.40577 -18.24430 -17.67908 -16.87732 -16.40075 -16.32189 -15.82433 -15.16258 -14.85404 -14.56672 -14.41013 -14.06355 -13.77054 -13.46875 -13.44204 -13.07776 -12.87165 -12.79281 -12.60441 -12.37217 -12.26339 -12.09149 -12.08119 -11.75966 -11.58475 -11.11851 -10.97115 -10.48134 -10.46145 -8.94420 -8.08305 -6.19825 1.43746 1.44042 1.55227 2.44305 2.51006 2.91030 3.19700 3.40342 3.60616 3.70209 3.85659 4.05169 4.10821 4.21071 4.41375 4.49670 4.54557 4.59775 4.64024 4.73465 4.82043 4.84273 4.89719 4.98456 5.01152 5.02008 5.11388 5.24542 5.26814 5.45618 5.71205 5.85194 6.20685 6.29573 6.67557 6.85057 6.96766 7.50328 8.97154 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046625 B = 0.005151 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.391416 B = 5434.763190 C = 5634.800112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.218 3.782 3 H -0.004 1.004 4 C -0.516 4.516 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.679 5.679 13 C 0.091 3.909 14 H 0.054 0.946 15 C -0.141 4.141 16 C -0.117 4.117 17 C 0.254 3.746 18 C -0.120 4.120 19 O -0.386 6.386 20 C 0.005 3.995 21 C 0.015 3.985 22 O -0.389 6.389 23 H 0.031 0.969 24 H 0.058 0.942 25 H 0.033 0.967 26 H 0.260 0.740 27 H 0.334 0.666 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.671 0.140 -18.305 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.109 3.891 3 H 0.014 0.986 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.309 5.309 13 C -0.020 4.020 14 H 0.072 0.928 15 C -0.180 4.180 16 C -0.155 4.155 17 C 0.177 3.823 18 C -0.159 4.159 19 O -0.307 6.307 20 C -0.070 4.070 21 C -0.060 4.060 22 O -0.310 6.310 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.153 0.847 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.128 0.297 -17.922 18.393 hybrid contribution -0.612 0.053 0.904 1.093 sum 3.515 0.350 -17.018 17.381 Atomic orbital electron populations 1.22313 0.99673 0.99246 1.00365 1.18959 0.90325 0.92307 0.87486 0.98572 1.21483 1.30385 1.12483 0.91161 0.92744 1.25732 0.95463 0.95903 1.01929 1.70022 1.38082 1.24320 1.23938 0.85502 0.77882 0.79068 0.78810 1.20434 1.20855 1.19287 1.60653 1.57827 1.09108 1.03263 1.22255 0.94013 0.95433 0.90327 0.92761 1.22884 0.98121 1.02164 0.94881 1.22285 0.92587 1.03955 0.96672 1.23695 0.94016 0.78027 0.86588 1.22862 0.98924 1.01304 0.92804 1.89220 1.44577 1.26534 1.70377 1.24708 0.88959 1.02211 0.91136 1.24495 0.96719 0.90634 0.94197 1.88836 1.71010 1.36287 1.34875 0.94962 0.92340 0.94821 0.93046 0.84737 0.90896 0.92212 0.88587 0.89985 0.91516 0.89574 0.90368 0.84871 0.85927 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.63 8.74 71.98 0.63 -7.00 16 2 C 0.22 11.33 2.57 44.17 0.11 11.44 16 3 H 0.00 -0.21 7.45 -2.39 -0.02 -0.23 16 4 C -0.52 -29.41 8.84 25.60 0.23 -29.18 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.43 5.30 84.65 0.45 0.88 16 7 N -0.92 -54.31 11.32 21.44 0.24 -54.07 16 8 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 N -0.68 -29.57 6.11 -467.52 -2.86 -32.43 16 13 C 0.09 3.40 3.15 46.04 0.15 3.55 16 14 H 0.05 2.31 7.47 -2.39 -0.02 2.29 16 15 C -0.14 -4.48 5.00 31.38 0.16 -4.32 16 16 C -0.12 -3.15 6.33 31.15 0.20 -2.95 16 17 C 0.25 7.17 1.24 31.30 0.04 7.20 16 18 C -0.12 -3.88 6.00 31.76 0.19 -3.69 16 19 O -0.39 -10.84 11.02 -126.23 -1.39 -12.23 16 20 C 0.01 0.10 7.96 72.65 0.58 0.68 16 21 C 0.02 0.25 8.08 72.65 0.59 0.84 16 22 O -0.39 -9.89 10.93 -126.23 -1.38 -11.27 16 23 H 0.03 1.48 8.13 -2.39 -0.02 1.46 16 24 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 25 H 0.03 1.44 5.99 -2.39 -0.01 1.42 16 26 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.33 13.58 7.85 -89.69 -0.70 12.88 16 28 H 0.07 2.24 7.55 -2.39 -0.02 2.22 16 29 H 0.06 1.97 7.39 -2.39 -0.02 1.95 16 30 H 0.10 2.32 8.07 -2.39 -0.02 2.30 16 31 H 0.08 2.08 8.07 -2.38 -0.02 2.06 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.09 2.74 8.14 -2.38 -0.02 2.73 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -64.72 292.48 0.30 -64.42 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.35 Total: 21.34 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 3.31 Total: -22.55 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -2.62 Total: -86.50 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -2.77 Total: -23.50 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.72 0.30 -64.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306634693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.395 kcal (2) G-P(sol) polarization free energy of solvation -64.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds