Wall clock time and date at job start Mon Mar 30 2020 03:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47184 * 2 1 4 4 C 1.37098 * 120.00183 * 89.23816 * 3 2 1 5 5 H 1.07996 * 119.99765 * 179.38588 * 4 3 2 6 6 C 1.38948 * 119.99736 * 359.38383 * 4 3 2 7 7 N 1.31403 * 120.00116 * 331.60212 * 6 4 3 8 8 Si 1.86808 * 119.99465 * 151.60286 * 6 4 3 9 9 H 1.48494 * 109.47345 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46848 * 120.00161 * 8 6 4 11 11 H 1.48499 * 109.46772 * 239.99823 * 8 6 4 12 12 C 1.34780 * 119.99469 * 269.23365 * 3 2 1 13 13 O 1.21296 * 119.99372 * 182.80390 * 12 3 2 14 14 C 1.50698 * 120.00211 * 2.80280 * 12 3 2 15 15 H 1.08997 * 110.55064 * 47.69003 * 14 12 3 16 16 C 1.54995 * 110.61769 * 284.63555 * 14 12 3 17 17 C 1.54819 * 102.08979 * 204.47807 * 16 14 12 18 18 C 1.54093 * 104.18814 * 20.87802 * 17 16 14 19 19 C 1.52995 * 109.88150 * 242.60661 * 18 17 16 20 20 C 1.53008 * 109.87763 * 121.45249 * 18 17 16 21 21 O 1.43746 * 107.29707 * 2.03419 * 18 17 16 22 22 H 1.08999 * 109.46911 * 60.00323 * 1 2 3 23 23 H 1.08996 * 109.47396 * 300.00689 * 1 2 3 24 24 H 1.08999 * 109.47619 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.46478 * 119.99856 * 2 1 3 26 26 H 1.09005 * 109.47264 * 239.99144 * 2 1 3 27 27 H 0.97007 * 120.00073 * 180.02562 * 7 6 4 28 28 H 1.09002 * 110.90846 * 322.67193 * 16 14 12 29 29 H 1.08998 * 110.91002 * 86.28062 * 16 14 12 30 30 H 1.09004 * 110.48397 * 262.20706 * 17 16 14 31 31 H 1.08995 * 110.59818 * 139.61439 * 17 16 14 32 32 H 1.09004 * 109.47244 * 179.29019 * 19 18 17 33 33 H 1.09003 * 109.47501 * 299.28587 * 19 18 17 34 34 H 1.09000 * 109.47179 * 59.29138 * 19 18 17 35 35 H 1.08995 * 109.47382 * 300.72069 * 20 18 17 36 36 H 1.09005 * 109.46324 * 60.72030 * 20 18 17 37 37 H 1.09001 * 109.47307 * 180.70992 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2320 2.0327 1.1872 5 1 2.6014 3.0475 1.1873 6 6 1.9731 1.3874 2.3902 7 7 1.0545 0.4497 2.4484 8 14 2.9311 1.8531 3.9248 9 1 3.9002 2.9292 3.5959 10 1 1.9908 2.3362 4.9677 11 1 3.6634 0.6645 4.4308 12 6 2.2576 2.0112 -1.1672 13 8 2.7101 3.1366 -1.1671 14 6 1.9632 1.3175 -2.4722 15 1 0.9698 0.8694 -2.4517 16 6 3.0423 0.2475 -2.7771 17 6 2.9595 0.1336 -4.3189 18 6 2.2959 1.4526 -4.7599 19 6 0.9565 1.1595 -5.4388 20 6 3.2180 2.2020 -5.7238 21 8 2.0821 2.2400 -3.5765 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8932 -0.5139 0.8901 26 1 1.8934 -0.5140 -0.8899 27 1 0.8735 -0.0006 3.2883 28 1 4.0289 0.5899 -2.4648 29 1 2.7935 -0.7020 -2.3031 30 1 2.3429 -0.7182 -4.6059 31 1 3.9562 0.0448 -4.7509 32 1 0.4872 2.0973 -5.7367 33 1 1.1237 0.5409 -6.3206 34 1 0.3042 0.6318 -4.7430 35 1 4.1666 2.4121 -5.2297 36 1 3.3963 1.5884 -6.6069 37 1 2.7480 3.1393 -6.0215 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335723345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:13 Heat of formation + Delta-G solvation = -89.810842 kcal Electronic energy + Delta-G solvation = -18603.654592 eV Core-core repulsion = 15766.820181 eV Total energy + Delta-G solvation = -2836.834411 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.37133 -39.68229 -37.04063 -34.17835 -33.86229 -32.67654 -31.22758 -28.40878 -28.13957 -26.14941 -24.19338 -22.96375 -21.15928 -20.71111 -18.85634 -18.25090 -17.11180 -16.79751 -16.13569 -15.94629 -15.60591 -15.24407 -14.76869 -14.59764 -14.31296 -14.04445 -13.81815 -13.31873 -13.11515 -13.04327 -12.83403 -12.72445 -12.63981 -12.57684 -12.30666 -12.14713 -12.11072 -11.78618 -11.56083 -11.35894 -10.79534 -10.70716 -10.17591 -9.77766 -8.37929 -5.83082 1.31672 1.42254 1.55349 1.90414 2.23478 2.64579 2.97010 3.30817 3.58208 3.77071 3.89695 4.04407 4.12532 4.21137 4.29826 4.44406 4.58829 4.74311 4.77669 4.83097 4.88353 4.90841 4.94829 4.99468 5.05842 5.12697 5.17557 5.29113 5.40652 5.42978 5.48955 5.91969 5.97663 6.15864 6.54386 7.17731 7.46209 8.04431 8.59115 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040635 B = 0.006842 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.898859 B = 4091.094163 C = 4396.415919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.112 3.888 3 N -0.444 5.444 4 C -0.358 4.358 5 H 0.067 0.933 6 C 0.014 3.986 7 N -0.857 5.857 8 Si 0.975 3.025 9 H -0.284 1.284 10 H -0.273 1.273 11 H -0.262 1.262 12 C 0.425 3.575 13 O -0.638 6.638 14 C 0.080 3.920 15 H 0.092 0.908 16 C -0.141 4.141 17 C -0.132 4.132 18 C 0.072 3.928 19 C -0.157 4.157 20 C -0.139 4.139 21 O -0.380 6.380 22 H 0.025 0.975 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.276 0.724 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.102 0.898 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -8.751 -11.865 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.010 4.010 3 N -0.162 5.162 4 C -0.485 4.485 5 H 0.085 0.915 6 C -0.191 4.191 7 N -0.494 5.494 8 Si 0.799 3.201 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.186 1.186 12 C 0.215 3.785 13 O -0.526 6.526 14 C 0.019 3.981 15 H 0.110 0.890 16 C -0.179 4.179 17 C -0.169 4.169 18 C 0.034 3.966 19 C -0.215 4.215 20 C -0.196 4.196 21 O -0.300 6.300 22 H 0.044 0.956 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.120 0.880 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.426 -8.143 -11.697 14.259 hybrid contribution 0.226 0.595 1.140 1.306 sum 0.652 -7.548 -10.557 12.994 Atomic orbital electron populations 1.22014 0.95637 1.01410 1.00738 1.21830 0.95542 0.81798 1.01805 1.43965 1.55359 1.12836 1.04060 1.19526 1.45270 1.00006 0.83745 0.91508 1.25776 0.95768 0.96701 1.00818 1.70242 1.25193 1.25783 1.28203 0.85189 0.78722 0.78491 0.77682 1.20897 1.19870 1.18636 1.20517 0.85158 0.86953 0.85890 1.90461 1.52041 1.22283 1.87809 1.22766 1.00136 0.89671 0.85528 0.89038 1.23164 0.97906 0.98711 0.98112 1.23058 1.03243 0.97547 0.93076 1.22603 0.96502 0.91461 0.86074 1.22240 0.95567 1.02270 1.01376 1.21911 0.98208 1.00846 0.98648 1.89006 1.93419 1.31436 1.16152 0.95554 0.91799 0.91112 0.89707 0.90866 0.91337 0.92320 0.87447 0.87441 0.88588 0.92834 0.88444 0.92563 0.93400 0.87953 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.68 9.60 71.98 0.69 -4.99 16 2 C 0.11 4.87 5.02 86.38 0.43 5.30 16 3 N -0.44 -23.59 2.62 -635.53 -1.67 -25.26 16 4 C -0.36 -20.98 9.45 84.04 0.79 -20.18 16 5 H 0.07 4.34 7.30 -2.91 -0.02 4.31 16 6 C 0.01 0.70 4.94 84.93 0.42 1.12 16 7 N -0.86 -42.66 8.33 21.66 0.18 -42.48 16 8 Si 0.98 42.13 29.64 68.60 2.03 44.16 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 12 C 0.43 22.92 7.00 87.66 0.61 23.53 16 13 O -0.64 -40.92 16.17 14.96 0.24 -40.67 16 14 C 0.08 3.25 2.74 30.53 0.08 3.33 16 15 H 0.09 3.42 6.60 -2.39 -0.02 3.41 16 16 C -0.14 -4.41 6.00 31.90 0.19 -4.22 16 17 C -0.13 -3.02 6.27 31.59 0.20 -2.82 16 18 C 0.07 2.01 1.19 -10.42 -0.01 2.00 16 19 C -0.16 -3.47 8.61 71.98 0.62 -2.85 16 20 C -0.14 -3.34 8.67 71.98 0.62 -2.72 16 21 O -0.38 -15.86 10.15 -130.95 -1.33 -17.19 16 22 H 0.03 1.01 7.03 -2.39 -0.02 0.99 16 23 H 0.06 3.05 6.19 -2.39 -0.01 3.03 16 24 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 25 H 0.08 3.93 5.90 -2.38 -0.01 3.92 16 26 H 0.07 2.61 4.49 -2.38 -0.01 2.60 16 27 H 0.28 12.70 8.31 -92.70 -0.77 11.93 16 28 H 0.06 2.07 8.05 -2.39 -0.02 2.05 16 29 H 0.11 2.82 6.21 -2.39 -0.01 2.81 16 30 H 0.11 1.80 7.70 -2.38 -0.02 1.78 16 31 H 0.10 1.85 7.70 -2.39 -0.02 1.83 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -72.69 290.20 5.17 -67.52 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 1.05 Total: 16.42 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 4.66 Total: -2.49 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -1.49 Total: -67.74 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -1.09 Total: -57.86 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -72.69 5.17 -67.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335723345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.291 kcal (2) G-P(sol) polarization free energy of solvation -72.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds