Wall clock time and date at job start Mon Mar 30 2020 04:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47446 * 2 1 4 4 C 1.34228 * 116.99600 * 179.97438 * 3 2 1 5 5 O 1.20818 * 120.00385 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99651 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.47144 * 59.99489 * 6 4 3 8 8 C 1.53001 * 109.47084 * 299.99574 * 6 4 3 9 9 N 1.46900 * 109.47392 * 180.02562 * 6 4 3 10 10 C 1.48720 * 111.01831 * 184.48997 * 9 6 4 11 11 C 1.54381 * 104.51692 * 158.96284 * 10 9 6 12 12 C 1.54257 * 105.14978 * 336.27274 * 11 10 9 13 13 H 1.08995 * 110.32672 * 118.84838 * 12 11 10 14 14 C 1.50701 * 110.32069 * 240.94890 * 12 11 10 15 15 H 1.08001 * 120.00030 * 118.54578 * 14 12 11 16 16 C 1.37881 * 120.00352 * 298.54543 * 14 12 11 17 17 N 1.31511 * 119.99467 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00369 * 179.97438 * 16 14 12 19 19 H 1.48509 * 109.46989 * 90.00064 * 18 16 14 20 20 H 1.48497 * 109.47250 * 209.99973 * 18 16 14 21 21 H 1.48501 * 109.47363 * 330.00536 * 18 16 14 22 22 C 1.48567 * 110.99718 * 299.99979 * 9 6 4 23 23 H 1.08996 * 109.47035 * 300.00651 * 1 2 3 24 24 H 1.09007 * 109.46611 * 59.99713 * 1 2 3 25 25 H 1.08996 * 109.47254 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47035 * 239.99349 * 2 1 3 27 27 H 1.08998 * 109.46466 * 120.00111 * 2 1 3 28 28 H 1.08995 * 109.47501 * 300.00477 * 8 6 4 29 29 H 1.09000 * 109.46950 * 60.00264 * 8 6 4 30 30 H 1.09001 * 109.47166 * 179.97438 * 8 6 4 31 31 H 1.09004 * 110.38960 * 40.24251 * 10 9 6 32 32 H 1.08996 * 110.50963 * 277.74694 * 10 9 6 33 33 H 1.09002 * 110.32526 * 217.32092 * 11 10 9 34 34 H 1.08998 * 110.32190 * 95.21733 * 11 10 9 35 35 H 0.96999 * 119.99733 * 179.97438 * 17 16 14 36 36 H 1.08999 * 110.41133 * 82.17552 * 22 9 6 37 37 H 1.09001 * 110.41003 * 319.73948 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5446 0.0005 5 8 4.0807 0.5864 0.0015 6 6 3.9209 2.9372 0.0000 7 1 3.5845 3.4699 0.8895 8 6 3.4501 3.6834 -1.2500 9 7 5.3879 2.8603 0.0001 10 6 5.9930 4.2145 0.1083 11 6 7.4225 3.9589 0.6324 12 6 7.3508 2.5954 1.3502 13 1 8.0194 1.8799 0.8716 14 6 7.7079 2.7509 2.8060 15 1 6.9843 2.5042 3.5689 16 6 8.9584 3.2082 3.1642 17 7 9.8394 3.5091 2.2352 18 14 9.4008 3.4017 4.9686 19 1 9.9926 2.1359 5.4717 20 1 10.3848 4.5033 5.1217 21 1 8.1768 3.7195 5.7471 22 6 5.8831 2.1404 1.2016 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 3.7864 3.1507 -2.1394 29 1 2.3616 3.7405 -1.2506 30 1 3.8664 4.6908 -1.2502 31 1 5.4324 4.8256 0.8157 32 1 6.0269 4.6967 -0.8686 33 1 7.7142 4.7409 1.3334 34 1 8.1275 3.9131 -0.1976 35 1 10.7190 3.8311 2.4871 36 1 5.8330 1.0626 1.0466 37 1 5.3056 2.4260 2.0808 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397745842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:27 Heat of formation + Delta-G solvation = -105.759784 kcal Electronic energy + Delta-G solvation = -17918.319664 eV Core-core repulsion = 15080.793655 eV Total energy + Delta-G solvation = -2837.526009 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.74611 -39.67865 -37.57233 -35.62603 -33.77709 -32.45753 -30.04555 -29.93538 -26.28944 -25.92709 -23.81660 -22.41324 -21.37060 -21.12993 -18.71455 -18.35831 -17.74436 -17.28152 -16.88831 -16.56115 -15.75900 -15.40978 -14.80703 -14.55016 -14.26322 -13.74848 -13.60203 -13.32589 -13.26708 -13.14455 -12.91566 -12.88783 -12.57890 -12.51997 -12.38267 -12.22666 -12.04143 -11.69212 -11.51995 -11.29423 -11.05132 -10.78645 -10.49491 -9.44581 -8.14238 -6.25940 1.16060 1.40466 1.41178 1.51525 1.54745 2.41463 3.06031 3.16292 3.65943 3.93649 4.00166 4.04631 4.10047 4.12003 4.34770 4.41093 4.50359 4.55771 4.75741 4.80712 4.87349 4.92280 4.93529 5.02453 5.14933 5.21175 5.26708 5.33604 5.46316 5.59706 5.68307 5.88218 5.92741 6.05384 6.38683 6.77711 6.83935 7.41658 8.94888 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.034514 B = 0.005598 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.077658 B = 5000.927910 C = 5489.857574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.466 3.534 5 O -0.524 6.524 6 C 0.075 3.925 7 H 0.088 0.912 8 C -0.129 4.129 9 N -0.509 5.509 10 C 0.047 3.953 11 C -0.084 4.084 12 C 0.039 3.961 13 H -0.008 1.008 14 C -0.536 4.536 15 H 0.050 0.950 16 C 0.015 3.985 17 N -0.916 5.916 18 Si 0.957 3.043 19 H -0.278 1.278 20 H -0.279 1.279 21 H -0.267 1.267 22 C 0.054 3.946 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.099 0.901 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.046 0.954 34 H 0.032 0.968 35 H 0.262 0.738 36 H 0.063 0.937 37 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.182 -0.093 -5.413 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.309 3.691 5 O -0.412 6.412 6 C -0.035 4.035 7 H 0.105 0.895 8 C -0.186 4.186 9 N -0.235 5.235 10 C -0.079 4.079 11 C -0.123 4.123 12 C 0.020 3.980 13 H 0.010 0.990 14 C -0.574 4.574 15 H 0.069 0.931 16 C -0.184 4.184 17 N -0.554 5.554 18 Si 0.782 3.218 19 H -0.204 1.204 20 H -0.205 1.205 21 H -0.192 1.192 22 C -0.074 4.074 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.118 0.882 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -17.697 -0.619 -5.947 18.680 hybrid contribution 0.700 -0.039 1.725 1.862 sum -16.997 -0.657 -4.222 17.526 Atomic orbital electron populations 1.21806 0.89754 1.04410 1.03913 1.23300 0.97430 0.79303 1.02228 1.86477 1.23242 1.33652 1.83879 1.23883 0.80834 0.92691 0.71691 1.90651 1.60960 1.44083 1.45498 1.21630 0.89381 0.89342 1.03118 0.89496 1.21757 1.02627 1.00436 0.93779 1.65358 1.04214 1.14423 1.39492 1.23182 0.94817 0.88916 1.01016 1.21979 0.94059 0.98744 0.97504 1.19337 0.90599 0.93249 0.94832 0.99021 1.21474 0.99061 1.44554 0.92302 0.93146 1.25751 0.96158 0.94922 1.01583 1.70112 1.06050 1.45038 1.34240 0.85578 0.78154 0.77801 0.80251 1.20353 1.20484 1.19151 1.23101 0.96625 0.98380 0.89293 0.91247 0.90758 0.88213 0.91475 0.92135 0.91996 0.88892 0.89553 0.93092 0.88408 0.93507 0.94906 0.92892 0.91880 0.95490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 10.29 71.98 0.74 -1.16 16 2 C 0.05 1.10 6.19 71.98 0.45 1.55 16 3 O -0.36 -9.44 10.12 -51.39 -0.52 -9.96 16 4 C 0.47 15.32 6.99 71.24 0.50 15.82 16 5 O -0.52 -21.25 13.82 21.99 0.30 -20.94 16 6 C 0.08 2.29 2.36 44.17 0.10 2.40 16 7 H 0.09 2.47 7.98 -2.39 -0.02 2.45 16 8 C -0.13 -2.85 9.08 71.98 0.65 -2.19 16 9 N -0.51 -19.84 4.99 -860.26 -4.29 -24.14 16 10 C 0.05 1.75 5.54 86.42 0.48 2.23 16 11 C -0.08 -4.07 5.74 31.49 0.18 -3.89 16 12 C 0.04 2.11 2.99 -10.65 -0.03 2.07 16 13 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 14 C -0.54 -30.70 8.37 25.60 0.21 -30.48 16 15 H 0.05 2.85 7.59 -2.91 -0.02 2.82 16 16 C 0.02 0.86 5.09 84.66 0.43 1.29 16 17 N -0.92 -54.21 12.35 21.45 0.26 -53.94 16 18 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 22 C 0.05 2.50 5.04 86.45 0.44 2.94 16 23 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.07 0.89 8.14 -2.38 -0.02 0.88 16 25 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 27 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.61 8.11 -2.39 -0.02 1.59 16 30 H 0.09 1.68 7.07 -2.39 -0.02 1.66 16 31 H 0.05 1.73 7.91 -2.38 -0.02 1.71 16 32 H 0.10 3.04 7.71 -2.39 -0.02 3.02 16 33 H 0.05 2.43 7.24 -2.39 -0.02 2.41 16 34 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.06 3.15 6.32 -2.39 -0.02 3.13 16 37 H 0.03 1.25 7.54 -2.39 -0.02 1.23 16 Total: -1.00 -68.11 300.72 2.96 -65.15 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.03 Total: 6.96 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 4.15 Total: -9.42 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -4.03 Total: -78.08 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.22 Total: -30.90 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -68.11 2.96 -65.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397745842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.610 kcal (2) G-P(sol) polarization free energy of solvation -68.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds