Wall clock time and date at job start Mon Mar 30 2020 04:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45193 * 109.47123 * 2 1 4 4 C 1.34236 * 117.00047 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99718 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99815 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47510 * 299.99866 * 6 4 3 8 8 C 1.52997 * 109.47452 * 60.00306 * 6 4 3 9 9 N 1.46908 * 109.46957 * 180.02562 * 6 4 3 10 10 C 1.47902 * 110.99962 * 181.70205 * 9 6 4 11 11 C 1.53996 * 107.05558 * 214.15413 * 10 9 6 12 12 C 1.54596 * 105.14028 * 1.22607 * 11 10 9 13 13 H 1.08995 * 110.72414 * 263.41796 * 12 11 10 14 14 C 1.50703 * 110.72276 * 140.31395 * 12 11 10 15 15 H 1.08001 * 120.00058 * 236.19236 * 14 12 11 16 16 C 1.37877 * 119.99648 * 56.19073 * 14 12 11 17 17 N 1.31513 * 120.00337 * 6.92134 * 16 14 12 18 18 Si 1.86804 * 119.99752 * 186.91966 * 16 14 12 19 19 H 1.48492 * 109.47071 * 84.99160 * 18 16 14 20 20 H 1.48495 * 109.47154 * 204.99347 * 18 16 14 21 21 H 1.48503 * 109.47108 * 324.99010 * 18 16 14 22 22 C 1.48534 * 110.99830 * 64.30598 * 9 6 4 23 23 H 1.08998 * 109.47219 * 299.99623 * 1 2 3 24 24 H 1.09001 * 109.47409 * 59.99799 * 1 2 3 25 25 H 1.09009 * 109.47610 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47051 * 239.99859 * 2 1 3 27 27 H 1.09006 * 109.47176 * 120.00598 * 2 1 3 28 28 H 1.09001 * 109.47101 * 305.52445 * 8 6 4 29 29 H 1.08998 * 109.47411 * 65.51803 * 8 6 4 30 30 H 1.08997 * 109.47104 * 185.52237 * 8 6 4 31 31 H 1.08999 * 109.91794 * 333.50935 * 10 9 6 32 32 H 1.09004 * 109.91578 * 94.80182 * 10 9 6 33 33 H 1.09002 * 110.30632 * 120.14352 * 11 10 9 34 34 H 1.08994 * 110.30708 * 242.30972 * 11 10 9 35 35 H 0.97001 * 119.99932 * 179.97438 * 17 16 14 36 36 H 1.09006 * 110.66302 * 278.15902 * 22 9 6 37 37 H 1.08997 * 110.66618 * 41.28718 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0012 7 1 3.5851 3.4698 -0.8888 8 6 3.4487 3.6839 1.2504 9 7 5.3877 2.8605 0.0010 10 6 5.9892 4.2110 0.0427 11 6 7.2872 4.1530 -0.7841 12 6 7.3623 2.7037 -1.3167 13 1 7.9959 2.0899 -0.6766 14 6 7.8638 2.6830 -2.7376 15 1 7.2744 2.2139 -3.5116 16 6 9.0751 3.2631 -3.0496 17 7 9.8551 3.7129 -2.0910 18 14 9.6083 3.4100 -4.8339 19 1 9.0272 4.6425 -5.4242 20 1 11.0900 3.4787 -4.9037 21 1 9.1315 2.2256 -5.5922 22 6 5.8877 2.2328 -1.2489 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 2.3603 3.6560 1.3009 29 1 3.8659 3.2077 2.1377 30 1 3.7838 4.7201 1.2027 31 1 5.3030 4.9367 -0.3938 32 1 6.2171 4.4844 1.0730 33 1 7.2393 4.8589 -1.6133 34 1 8.1483 4.3688 -0.1518 35 1 10.7074 4.1206 -2.3106 36 1 5.8335 1.1462 -1.1820 37 1 5.3282 2.5946 -2.1115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397745843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:30 Heat of formation + Delta-G solvation = -86.724028 kcal Electronic energy + Delta-G solvation = -17891.601662 eV Core-core repulsion = 15054.901106 eV Total energy + Delta-G solvation = -2836.700556 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.41710 -38.14545 -36.24463 -33.87665 -32.12430 -31.42155 -28.37954 -28.24086 -24.78389 -24.25520 -22.81476 -20.87467 -19.82283 -19.28102 -17.46948 -16.63067 -16.38495 -15.95277 -15.14460 -14.58400 -14.25311 -14.17839 -13.35675 -13.23824 -12.92266 -12.51262 -12.27619 -12.14336 -11.94104 -11.77980 -11.55259 -11.39693 -11.09821 -11.01767 -10.65778 -10.53110 -10.49700 -10.24477 -9.92167 -9.54107 -9.14040 -8.77172 -8.35234 -7.81893 -5.99931 -4.01925 2.47683 2.70340 3.31980 3.38518 3.41562 4.41336 4.57178 4.76584 4.82347 4.92852 5.12716 5.17736 5.27047 5.33543 5.56430 5.64031 5.70757 5.76503 5.81079 5.87783 6.04068 6.18550 6.22834 6.43329 6.53469 6.57610 6.97041 7.15561 7.19304 7.52584 7.59435 7.68748 7.91004 8.05195 8.09290 8.47550 8.99530 9.61433 11.09913 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035447 B = 0.005521 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.720268 B = 5070.780145 C = 5575.677398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.364 6.364 4 C 0.465 3.535 5 O -0.482 6.482 6 C 0.084 3.916 7 H 0.074 0.926 8 C -0.139 4.139 9 N -0.505 5.505 10 C 0.038 3.962 11 C -0.101 4.101 12 C 0.053 3.947 13 H 0.036 0.964 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.065 3.935 17 N -0.886 5.886 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.038 3.962 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.260 0.740 36 H 0.078 0.922 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.207 -1.234 5.264 17.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.282 6.282 4 C 0.305 3.695 5 O -0.367 6.367 6 C -0.027 4.027 7 H 0.091 0.909 8 C -0.197 4.197 9 N -0.231 5.231 10 C -0.090 4.090 11 C -0.140 4.140 12 C 0.034 3.966 13 H 0.054 0.946 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.137 4.137 17 N -0.524 5.524 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.089 4.089 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -15.691 -1.783 5.764 16.811 hybrid contribution 0.109 0.447 -1.724 1.784 sum -15.582 -1.336 4.040 16.153 Atomic orbital electron populations 1.21790 0.92874 1.02738 1.03365 1.22957 0.95060 0.80716 1.02579 1.86481 1.25047 1.31979 1.84688 1.23694 0.80124 0.92849 0.72787 1.90664 1.59957 1.42765 1.43300 1.21396 0.91815 0.88953 1.00517 0.90900 1.21795 1.01106 1.00450 0.96352 1.64737 1.01261 1.18301 1.38806 1.23005 0.97452 0.88123 1.00377 1.22304 0.93311 1.00703 0.97657 1.19519 0.89043 0.91695 0.96321 0.94570 1.21077 1.04207 1.36952 0.93309 0.92665 1.24944 0.96195 0.95592 0.96974 1.69993 1.10749 1.40271 1.31413 0.86661 0.77560 0.78499 0.85593 1.20678 1.21289 1.19992 1.23546 0.98727 0.99488 0.87137 0.91590 0.91570 0.90444 0.91354 0.91364 0.91408 0.91296 0.91085 0.95022 0.91557 0.92581 0.91844 0.93041 0.90319 0.95128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.36 -5.14 10.02 -39.27 -0.39 -5.53 16 4 C 0.46 7.85 7.02 36.00 0.25 8.10 16 5 O -0.48 -9.69 14.16 -18.75 -0.27 -9.96 16 6 C 0.08 1.36 2.27 -68.86 -0.16 1.20 16 7 H 0.07 1.14 8.00 -51.93 -0.42 0.72 16 8 C -0.14 -1.78 8.91 37.16 0.33 -1.45 16 9 N -0.50 -10.04 4.86 -223.88 -1.09 -11.12 16 10 C 0.04 0.72 5.48 -2.75 -0.02 0.70 16 11 C -0.10 -2.38 5.38 -25.37 -0.14 -2.52 16 12 C 0.05 1.38 3.03 -89.91 -0.27 1.11 16 13 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 14 C -0.52 -14.49 8.48 -34.44 -0.29 -14.78 16 15 H 0.06 1.54 7.80 -52.49 -0.41 1.13 16 16 C 0.06 1.82 5.20 -17.82 -0.09 1.73 16 17 N -0.89 -25.61 12.37 55.43 0.69 -24.93 16 18 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.04 0.86 5.12 -1.90 -0.01 0.85 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 27 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 28 H 0.07 0.73 7.98 -51.93 -0.41 0.32 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.83 7.15 -51.93 -0.37 0.46 16 31 H 0.03 0.55 7.44 -51.93 -0.39 0.16 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.39 7.80 -51.93 -0.41 0.98 16 34 H 0.06 1.57 8.01 -51.93 -0.42 1.16 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.08 1.88 6.56 -51.93 -0.34 1.54 16 37 H 0.03 0.69 7.84 -51.93 -0.41 0.28 16 LS Contribution 301.64 15.07 4.55 4.55 Total: -1.00 -30.68 301.64 -7.40 -38.08 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.08 Total: -2.56 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 0.22 Total: -4.95 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.40 Total: -36.05 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.66 Total: -15.49 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.68 -7.40 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397745843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.643 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds