Wall clock time and date at job start Mon Mar 30 2020 04:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45193 * 109.47123 * 2 1 4 4 C 1.34236 * 117.00047 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99718 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99815 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47510 * 299.99866 * 6 4 3 8 8 C 1.52997 * 109.47452 * 60.00306 * 6 4 3 9 9 N 1.46908 * 109.46957 * 180.02562 * 6 4 3 10 10 C 1.47902 * 110.99962 * 181.70205 * 9 6 4 11 11 C 1.53996 * 107.05558 * 214.15413 * 10 9 6 12 12 C 1.54596 * 105.14028 * 1.22607 * 11 10 9 13 13 H 1.08995 * 110.72414 * 263.41796 * 12 11 10 14 14 C 1.50703 * 110.72276 * 140.31395 * 12 11 10 15 15 H 1.08001 * 120.00058 * 236.19236 * 14 12 11 16 16 C 1.37877 * 119.99648 * 56.19073 * 14 12 11 17 17 N 1.31513 * 120.00337 * 6.92134 * 16 14 12 18 18 Si 1.86804 * 119.99752 * 186.91966 * 16 14 12 19 19 H 1.48492 * 109.47071 * 84.99160 * 18 16 14 20 20 H 1.48495 * 109.47154 * 204.99347 * 18 16 14 21 21 H 1.48503 * 109.47108 * 324.99010 * 18 16 14 22 22 C 1.48534 * 110.99830 * 64.30598 * 9 6 4 23 23 H 1.08998 * 109.47219 * 299.99623 * 1 2 3 24 24 H 1.09001 * 109.47409 * 59.99799 * 1 2 3 25 25 H 1.09009 * 109.47610 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47051 * 239.99859 * 2 1 3 27 27 H 1.09006 * 109.47176 * 120.00598 * 2 1 3 28 28 H 1.09001 * 109.47101 * 305.52445 * 8 6 4 29 29 H 1.08998 * 109.47411 * 65.51803 * 8 6 4 30 30 H 1.08997 * 109.47104 * 185.52237 * 8 6 4 31 31 H 1.08999 * 109.91794 * 333.50935 * 10 9 6 32 32 H 1.09004 * 109.91578 * 94.80182 * 10 9 6 33 33 H 1.09002 * 110.30632 * 120.14352 * 11 10 9 34 34 H 1.08994 * 110.30708 * 242.30972 * 11 10 9 35 35 H 0.97001 * 119.99932 * 179.97438 * 17 16 14 36 36 H 1.09006 * 110.66302 * 278.15902 * 22 9 6 37 37 H 1.08997 * 110.66618 * 41.28718 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9373 0.0012 7 1 3.5851 3.4698 -0.8888 8 6 3.4487 3.6839 1.2504 9 7 5.3877 2.8605 0.0010 10 6 5.9892 4.2110 0.0427 11 6 7.2872 4.1530 -0.7841 12 6 7.3623 2.7037 -1.3167 13 1 7.9959 2.0899 -0.6766 14 6 7.8638 2.6830 -2.7376 15 1 7.2744 2.2139 -3.5116 16 6 9.0751 3.2631 -3.0496 17 7 9.8551 3.7129 -2.0910 18 14 9.6083 3.4100 -4.8339 19 1 9.0272 4.6425 -5.4242 20 1 11.0900 3.4787 -4.9037 21 1 9.1315 2.2256 -5.5922 22 6 5.8877 2.2328 -1.2489 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 2.3603 3.6560 1.3009 29 1 3.8659 3.2077 2.1377 30 1 3.7838 4.7201 1.2027 31 1 5.3030 4.9367 -0.3938 32 1 6.2171 4.4844 1.0730 33 1 7.2393 4.8589 -1.6133 34 1 8.1483 4.3688 -0.1518 35 1 10.7074 4.1206 -2.3106 36 1 5.8335 1.1462 -1.1820 37 1 5.3282 2.5946 -2.1115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397745843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:29 Heat of formation + Delta-G solvation = -106.359761 kcal Electronic energy + Delta-G solvation = -17892.453131 eV Core-core repulsion = 15054.901106 eV Total energy + Delta-G solvation = -2837.552026 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.72233 -39.70902 -37.56237 -35.62551 -33.77247 -32.45456 -30.06562 -29.96225 -26.29051 -25.93346 -23.81638 -22.32276 -21.51168 -20.98863 -18.75339 -18.40036 -17.73745 -17.34459 -16.82190 -16.44313 -15.78734 -15.42196 -14.71598 -14.54463 -14.30090 -13.84198 -13.60781 -13.35591 -13.23695 -13.16534 -12.99022 -12.89949 -12.59223 -12.53122 -12.40033 -12.28459 -12.03217 -11.58186 -11.50008 -11.27378 -11.05143 -10.84682 -10.50449 -9.37489 -8.15152 -6.25368 1.17408 1.40951 1.41247 1.51408 1.55219 2.41692 3.05223 3.16418 3.67830 3.91708 4.00325 4.05048 4.10279 4.11308 4.35100 4.38247 4.47551 4.53812 4.75740 4.80300 4.87207 4.92149 4.93774 5.01819 5.14820 5.20438 5.26114 5.30633 5.45683 5.61034 5.74204 5.84379 5.97670 6.07738 6.36899 6.79125 6.82660 7.41967 8.94344 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035447 B = 0.005521 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.720268 B = 5070.780145 C = 5575.677398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.466 3.534 5 O -0.524 6.524 6 C 0.078 3.922 7 H 0.088 0.912 8 C -0.131 4.131 9 N -0.517 5.517 10 C 0.049 3.951 11 C -0.092 4.092 12 C 0.043 3.957 13 H -0.005 1.005 14 C -0.540 4.540 15 H 0.050 0.950 16 C 0.018 3.982 17 N -0.914 5.914 18 Si 0.956 3.044 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.271 1.271 22 C 0.056 3.944 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.060 0.940 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.310 -0.265 5.124 19.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.309 3.691 5 O -0.412 6.412 6 C -0.032 4.032 7 H 0.105 0.895 8 C -0.189 4.189 9 N -0.243 5.243 10 C -0.077 4.077 11 C -0.131 4.131 12 C 0.024 3.976 13 H 0.013 0.987 14 C -0.578 4.578 15 H 0.069 0.931 16 C -0.181 4.181 17 N -0.553 5.553 18 Si 0.781 3.219 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.196 1.196 22 C -0.072 4.072 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -17.833 -0.804 5.632 18.719 hybrid contribution 0.721 0.075 -1.649 1.801 sum -17.112 -0.729 3.984 17.585 Atomic orbital electron populations 1.21806 0.89763 1.04406 1.03910 1.23295 0.97416 0.79321 1.02218 1.86474 1.23282 1.33632 1.83922 1.23886 0.80792 0.92695 0.71697 1.90658 1.61064 1.44030 1.45426 1.21599 0.89261 0.89298 1.03047 0.89467 1.21803 1.02613 1.00530 0.93927 1.64635 1.04112 1.18603 1.36906 1.22906 0.95484 0.88467 1.00890 1.22070 0.95230 0.98441 0.97309 1.19467 0.90454 0.92858 0.94851 0.98716 1.21374 1.04848 1.37413 0.94204 0.93145 1.25729 0.96086 0.95035 1.01274 1.70114 1.11043 1.40644 1.33458 0.85607 0.77199 0.78776 0.80304 1.19540 1.20799 1.19626 1.23160 0.96752 0.98562 0.88708 0.90768 0.91240 0.88223 0.92128 0.91509 0.88939 0.91899 0.89464 0.92151 0.89437 0.94118 0.93978 0.92869 0.92190 0.95051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 10.29 71.98 0.74 -1.15 16 2 C 0.05 1.10 6.19 71.98 0.45 1.55 16 3 O -0.36 -9.42 10.02 -51.47 -0.52 -9.93 16 4 C 0.47 15.30 7.02 71.23 0.50 15.80 16 5 O -0.52 -21.29 14.16 21.96 0.31 -20.97 16 6 C 0.08 2.36 2.27 44.17 0.10 2.46 16 7 H 0.09 2.46 8.00 -2.39 -0.02 2.44 16 8 C -0.13 -2.90 8.91 71.98 0.64 -2.26 16 9 N -0.52 -20.12 4.86 -862.21 -4.19 -24.31 16 10 C 0.05 1.81 5.48 86.45 0.47 2.28 16 11 C -0.09 -4.39 5.38 31.47 0.17 -4.22 16 12 C 0.04 2.31 3.03 -10.33 -0.03 2.27 16 13 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 14 C -0.54 -31.06 8.48 25.60 0.22 -30.85 16 15 H 0.05 2.87 7.80 -2.91 -0.02 2.84 16 16 C 0.02 1.04 5.20 84.65 0.44 1.48 16 17 N -0.91 -53.93 12.37 21.45 0.27 -53.66 16 18 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 22 C 0.06 2.58 5.12 86.65 0.44 3.02 16 23 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 27 H 0.07 1.46 8.13 -2.38 -0.02 1.44 16 28 H 0.09 1.62 7.98 -2.39 -0.02 1.60 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 1.67 7.15 -2.39 -0.02 1.65 16 31 H 0.06 1.88 7.44 -2.39 -0.02 1.87 16 32 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 33 H 0.04 2.02 7.80 -2.39 -0.02 2.01 16 34 H 0.04 2.14 8.01 -2.39 -0.02 2.12 16 35 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.06 2.98 6.56 -2.38 -0.02 2.97 16 37 H 0.03 1.42 7.84 -2.39 -0.02 1.40 16 Total: -1.00 -68.07 301.64 3.06 -65.00 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.03 Total: 7.23 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 4.14 Total: -9.61 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -3.92 Total: -77.98 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.20 Total: -30.91 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -68.07 3.06 -65.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397745843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.355 kcal (2) G-P(sol) polarization free energy of solvation -68.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds