Wall clock time and date at job start Mon Mar 30 2020 03:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.46948 * 2 1 4 4 C 1.42906 * 114.00094 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47354 * 179.97438 * 4 3 2 6 6 C 1.53350 * 109.41789 * 295.12768 * 5 4 3 7 7 C 1.53191 * 109.14875 * 178.67367 * 6 5 4 8 8 N 1.46927 * 108.89291 * 54.57945 * 7 6 5 9 9 C 1.34776 * 120.63084 * 126.34397 * 8 7 6 10 10 O 1.21687 * 119.99936 * 354.82217 * 9 8 7 11 11 C 1.46373 * 119.99744 * 174.82814 * 9 8 7 12 12 H 1.08004 * 120.00202 * 342.41262 * 11 9 8 13 13 C 1.40054 * 120.00088 * 162.41620 * 11 9 8 14 14 N 1.30666 * 120.00258 * 170.18327 * 13 11 9 15 15 Si 1.86796 * 119.99693 * 350.18631 * 13 11 9 16 16 H 1.48498 * 109.47392 * 84.76213 * 15 13 11 17 17 H 1.48495 * 109.47258 * 204.76181 * 15 13 11 18 18 H 1.48508 * 109.47310 * 324.76283 * 15 13 11 19 19 C 1.46926 * 118.73907 * 306.31851 * 8 7 6 20 20 C 1.53041 * 109.45903 * 174.99920 * 5 4 3 21 21 H 1.09007 * 109.46931 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47179 * 299.99991 * 1 2 3 23 23 H 1.08996 * 109.46952 * 60.00502 * 1 2 3 24 24 H 1.09004 * 109.47179 * 240.00009 * 2 1 3 25 25 H 1.09004 * 109.47444 * 119.99884 * 2 1 3 26 26 H 1.09006 * 109.46858 * 59.99923 * 4 3 2 27 27 H 1.09004 * 109.46965 * 300.00618 * 4 3 2 28 28 H 1.08995 * 109.45881 * 55.02591 * 5 4 3 29 29 H 1.09002 * 109.68330 * 58.70976 * 6 5 4 30 30 H 1.08997 * 109.47599 * 298.51445 * 6 5 4 31 31 H 1.08998 * 109.58941 * 294.72348 * 7 6 5 32 32 H 1.09001 * 109.58825 * 174.43717 * 7 6 5 33 33 H 0.97003 * 120.00402 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.59180 * 173.39405 * 19 8 7 35 35 H 1.09000 * 109.58736 * 293.68206 * 19 8 7 36 36 H 1.09001 * 109.49382 * 61.43823 * 20 5 4 37 37 H 1.08996 * 109.52486 * 301.35374 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9384 -0.0001 6 6 3.3640 3.5886 -1.3101 7 6 3.7325 5.0754 -1.2902 8 7 5.1716 5.2053 -1.0243 9 6 5.9609 5.9198 -1.8507 10 8 5.5030 6.3859 -2.8773 11 6 7.3689 6.1351 -1.5133 12 1 7.7113 5.9809 -0.5007 13 6 8.2721 6.5411 -2.5037 14 7 9.4787 6.9179 -2.1728 15 14 7.7518 6.5440 -4.2977 16 1 7.0517 7.8163 -4.6081 17 1 8.9528 6.4164 -5.1617 18 1 6.8370 5.4015 -4.5498 19 6 5.7339 4.5420 0.1600 20 6 5.3456 3.0604 0.1263 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8340 0.9765 -0.8892 27 1 3.8333 0.9767 0.8908 28 1 3.3494 3.4416 0.8415 29 1 2.2839 3.4827 -1.4121 30 1 3.8586 3.1024 -2.1510 31 1 3.1689 5.5811 -0.5062 32 1 3.4975 5.5231 -2.2559 33 1 10.1044 7.1987 -2.8588 34 1 6.8199 4.6354 0.1502 35 1 5.3354 5.0058 1.0624 36 1 5.8215 2.5790 -0.7281 37 1 5.6746 2.5770 1.0461 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409433346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:37 Heat of formation + Delta-G solvation = -108.858505 kcal Electronic energy + Delta-G solvation = -17747.219267 eV Core-core repulsion = 14909.558888 eV Total energy + Delta-G solvation = -2837.660379 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.12380 -37.94989 -36.16255 -32.86415 -32.78354 -30.99803 -30.65821 -27.22773 -26.07753 -23.05272 -22.59596 -22.49075 -20.29369 -18.86560 -16.87007 -16.48350 -16.14186 -15.93863 -14.93991 -14.64103 -14.11192 -14.09768 -13.86419 -13.27885 -12.98454 -12.66031 -12.50300 -12.24415 -12.04128 -11.91638 -11.65511 -11.40152 -11.32558 -10.94718 -10.66464 -10.55560 -10.41942 -10.17567 -10.02961 -9.62083 -9.42121 -8.99020 -7.89769 -7.48782 -6.60177 -4.80020 3.46492 3.49747 3.59779 3.71873 4.20648 4.29912 4.57676 4.84482 4.91351 4.94555 5.10858 5.15986 5.22238 5.40188 5.45143 5.53039 5.57116 5.65764 5.71124 5.79841 5.83939 5.91943 5.98431 6.17171 6.32329 6.33437 6.46994 6.47841 6.52379 6.74236 7.13640 7.17582 7.70079 7.91489 8.35119 8.75327 9.18295 10.07918 10.41256 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044284 B = 0.005208 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.132526 B = 5375.528147 C = 5600.263401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.387 6.387 4 C 0.068 3.932 5 C -0.083 4.083 6 C -0.122 4.122 7 C 0.117 3.883 8 N -0.632 5.632 9 C 0.556 3.444 10 O -0.618 6.618 11 C -0.535 4.535 12 H 0.090 0.910 13 C 0.103 3.897 14 N -0.830 5.830 15 Si 0.963 3.037 16 H -0.276 1.276 17 H -0.320 1.320 18 H -0.268 1.268 19 C 0.123 3.877 20 C -0.127 4.127 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.281 0.719 34 H 0.100 0.900 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 -13.044 6.005 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.307 6.307 4 C -0.008 4.008 5 C -0.101 4.101 6 C -0.160 4.160 7 C -0.007 4.007 8 N -0.366 5.366 9 C 0.365 3.635 10 O -0.510 6.510 11 C -0.571 4.571 12 H 0.108 0.892 13 C -0.114 4.114 14 N -0.460 5.460 15 Si 0.795 3.205 16 H -0.202 1.202 17 H -0.251 1.251 18 H -0.193 1.193 19 C -0.001 4.001 20 C -0.166 4.166 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.654 -12.575 5.505 18.007 hybrid contribution 0.060 -0.355 -0.547 0.655 sum -11.594 -12.930 4.958 18.061 Atomic orbital electron populations 1.21737 0.93949 1.01978 1.03148 1.22416 0.95465 0.84326 0.99806 1.87893 1.21606 1.25813 1.95373 1.22615 0.80674 0.97740 0.99794 1.21179 0.96242 0.93329 0.99363 1.21943 1.00805 0.96577 0.96680 1.21244 0.83052 0.94694 1.01697 1.47723 1.06861 1.54415 1.27617 1.18354 0.87163 0.76789 0.81220 1.90213 1.75383 1.57187 1.28185 1.20758 0.90696 1.46938 0.98660 0.89181 1.25720 0.93692 0.89373 1.02647 1.69561 1.06005 1.33658 1.36789 0.85307 0.74573 0.81093 0.79534 1.20238 1.25101 1.19341 1.21443 1.00957 0.89966 0.87758 1.21938 0.94133 0.98545 1.01963 0.91360 0.91921 0.91826 0.93632 0.93718 0.93442 0.93582 0.90599 0.91129 0.92084 0.93612 0.89721 0.90860 0.88216 0.93533 0.91421 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.06 0.55 6.66 37.16 0.25 0.80 16 3 O -0.39 -4.97 9.86 -35.23 -0.35 -5.32 16 4 C 0.07 0.84 5.32 37.16 0.20 1.04 16 5 C -0.08 -1.16 2.39 -90.42 -0.22 -1.38 16 6 C -0.12 -1.94 5.30 -26.45 -0.14 -2.08 16 7 C 0.12 2.23 6.43 -3.71 -0.02 2.21 16 8 N -0.63 -13.93 2.97 -174.43 -0.52 -14.45 16 9 C 0.56 15.08 7.21 -12.99 -0.09 14.99 16 10 O -0.62 -18.31 12.12 5.20 0.06 -18.25 16 11 C -0.53 -15.16 9.08 -35.63 -0.32 -15.48 16 12 H 0.09 2.52 6.42 -52.48 -0.34 2.18 16 13 C 0.10 2.97 5.52 -17.37 -0.10 2.87 16 14 N -0.83 -23.72 13.92 55.55 0.77 -22.94 16 15 Si 0.96 25.71 25.83 -169.99 -4.39 21.32 16 16 H -0.28 -7.63 7.11 56.52 0.40 -7.22 16 17 H -0.32 -8.04 7.11 56.52 0.40 -7.64 16 18 H -0.27 -7.47 6.82 56.52 0.39 -7.09 16 19 C 0.12 2.23 6.28 -3.71 -0.02 2.21 16 20 C -0.13 -1.87 5.36 -26.61 -0.14 -2.02 16 21 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.05 7.80 -51.93 -0.41 0.65 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.78 6.99 -51.93 -0.36 1.42 16 33 H 0.28 7.40 8.29 -40.82 -0.34 7.06 16 34 H 0.10 1.97 5.60 -51.93 -0.29 1.68 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -32.17 296.52 -6.23 -38.40 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -6.04 Total: -5.52 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.23 Total: 2.29 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.25 Total: -37.39 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.28 Total: -23.56 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -4.39 Total: 21.32 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.17 -6.23 -38.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409433346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.458 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds