Wall clock time and date at job start Mon Mar 30 2020 03:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47258 * 2 1 4 4 C 1.50698 * 109.47283 * 240.00049 * 2 1 3 5 5 H 1.08004 * 120.00090 * 275.00532 * 4 2 1 6 6 C 1.37877 * 120.00323 * 94.99668 * 4 2 1 7 7 N 1.31515 * 120.00270 * 184.91441 * 6 4 2 8 8 Si 1.86806 * 119.99584 * 4.92416 * 6 4 2 9 9 H 1.48493 * 109.47218 * 84.83055 * 8 6 4 10 10 H 1.48504 * 109.46495 * 204.82890 * 8 6 4 11 11 H 1.48493 * 109.46898 * 324.82430 * 8 6 4 12 12 N 1.46499 * 109.47119 * 120.00226 * 2 1 3 13 13 C 1.34784 * 119.99486 * 274.99869 * 12 2 1 14 14 O 1.21278 * 120.00177 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99543 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.46973 * 180.02562 * 15 13 12 17 17 O 1.42900 * 109.47163 * 180.02562 * 16 15 13 18 18 C 1.42900 * 114.00024 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47286 * 179.97438 * 18 17 16 20 20 C 1.52991 * 117.50198 * 243.62193 * 19 18 17 21 21 C 1.53001 * 60.00248 * 252.50901 * 20 19 18 22 22 H 1.08998 * 109.46995 * 55.03689 * 1 2 3 23 23 H 1.08997 * 109.47157 * 175.03519 * 1 2 3 24 24 H 1.08998 * 109.46793 * 295.03764 * 1 2 3 25 25 H 0.96995 * 119.99823 * 180.02562 * 7 6 4 26 26 H 0.96991 * 120.00528 * 94.99745 * 12 2 1 27 27 H 1.09005 * 109.47161 * 60.00103 * 15 13 12 28 28 H 1.08996 * 109.47517 * 300.00052 * 15 13 12 29 29 H 1.08995 * 109.47107 * 60.00031 * 16 15 13 30 30 H 1.09005 * 109.47127 * 300.00471 * 16 15 13 31 31 H 1.08997 * 109.47397 * 59.99255 * 18 17 16 32 32 H 1.09001 * 109.46960 * 300.00112 * 18 17 16 33 33 H 1.08998 * 115.54667 * 29.33054 * 19 18 17 34 34 H 1.08999 * 117.50046 * 359.97438 * 20 19 18 35 35 H 1.08997 * 117.50240 * 145.01840 * 20 19 18 36 36 H 1.08997 * 117.49839 * 252.50986 * 21 20 19 37 37 H 1.08997 * 117.49927 * 107.48467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3581 7 7 2.7060 -0.6132 -3.4622 8 14 2.3137 1.8791 -2.3174 9 1 3.5992 2.3948 -1.7822 10 1 2.1059 2.3990 -3.6928 11 1 1.1987 2.3274 -1.4450 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1586 2.4115 15 6 2.6489 -0.7288 3.5877 16 6 2.6999 0.2542 4.7591 17 8 3.1762 -0.4194 5.9258 18 6 3.2617 0.4136 7.0837 19 6 3.7796 -0.4079 8.2660 20 6 2.8429 -0.5940 9.4612 21 6 4.0539 0.3340 9.5757 22 1 -0.3633 0.5889 -0.8422 23 1 -0.3633 -1.0238 -0.0889 24 1 -0.3633 0.4349 0.9311 25 1 2.9370 -0.1049 -4.2554 26 1 2.2490 -1.6317 1.1526 27 1 3.6480 -1.1214 3.3986 28 1 1.9760 -1.5506 3.8326 29 1 1.7006 0.6463 4.9480 30 1 3.3725 1.0763 4.5144 31 1 2.2739 0.8085 7.3210 32 1 3.9455 1.2395 6.8874 33 1 4.4394 -1.2367 8.0094 34 1 1.8578 -0.1309 9.4056 35 1 2.8861 -1.5455 9.9912 36 1 4.8938 -0.0070 10.1809 37 1 3.8654 1.4074 9.5950 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434078432.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:03 Heat of formation + Delta-G solvation = -96.735350 kcal Electronic energy + Delta-G solvation = -16801.218863 eV Core-core repulsion = 13964.084183 eV Total energy + Delta-G solvation = -2837.134680 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73907 -39.34286 -37.52820 -36.71385 -34.39773 -32.98500 -31.16471 -27.92570 -27.33898 -24.86961 -23.24550 -22.45882 -21.59825 -21.16703 -19.30484 -18.17665 -17.44282 -17.28197 -17.05939 -16.29468 -15.92165 -15.81881 -15.31505 -14.68955 -14.52105 -14.31012 -14.23544 -14.04515 -13.25944 -13.04776 -12.81321 -12.56046 -12.51539 -12.39142 -12.34941 -12.00583 -11.88440 -11.34723 -11.24327 -11.16658 -10.88644 -10.76153 -10.48055 -9.82231 -8.39851 -6.46210 1.28860 1.33330 1.43801 1.74774 2.13191 2.26408 2.75392 2.95980 3.11353 3.81440 3.88318 3.96933 4.06476 4.07894 4.30411 4.32528 4.45113 4.52956 4.58705 4.66694 4.73532 4.78167 4.81124 4.84291 4.88006 5.01874 5.09930 5.24198 5.24977 5.36951 5.44884 5.73901 6.11145 6.18330 6.59209 6.88603 7.19915 7.44129 8.75207 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.053065 B = 0.003704 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.529130 B = 7558.196735 C = 7639.573810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.232 3.768 3 H 0.030 0.970 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.032 3.968 7 N -0.930 5.930 8 Si 0.927 3.073 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.256 1.256 12 N -0.703 5.703 13 C 0.504 3.496 14 O -0.600 6.600 15 C -0.127 4.127 16 C 0.085 3.915 17 O -0.398 6.398 18 C 0.088 3.912 19 C -0.170 4.170 20 C -0.177 4.177 21 C -0.164 4.164 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.038 0.962 25 H 0.271 0.729 26 H 0.408 0.592 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 0.292 22.776 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.128 3.872 3 H 0.048 0.952 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.168 4.168 7 N -0.569 5.569 8 Si 0.752 3.248 9 H -0.200 1.200 10 H -0.202 1.202 11 H -0.180 1.180 12 N -0.352 5.352 13 C 0.292 3.708 14 O -0.483 6.483 15 C -0.167 4.167 16 C 0.008 3.992 17 O -0.318 6.318 18 C 0.012 3.988 19 C -0.188 4.188 20 C -0.214 4.214 21 C -0.201 4.201 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.243 0.757 27 H 0.134 0.866 28 H 0.139 0.861 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.833 0.933 22.592 22.626 hybrid contribution 0.131 0.581 -0.703 0.922 sum 0.964 1.514 21.889 21.962 Atomic orbital electron populations 1.22111 0.97061 1.01326 0.99506 1.18898 0.92045 0.93142 0.83096 0.95197 1.21211 1.44341 0.94876 0.96130 0.92422 1.25624 0.93763 1.02471 0.94984 1.69977 1.46631 1.37784 1.02483 0.86043 0.79694 0.81348 0.77688 1.19970 1.20240 1.18023 1.46383 1.64956 1.14603 1.09224 1.21034 0.77270 0.86980 0.85519 1.90629 1.53464 1.18069 1.86100 1.21411 1.05363 0.99699 0.90209 1.21991 0.98768 0.94076 0.84388 1.87766 1.87201 1.38227 1.18598 1.22142 0.99880 0.92544 0.84243 1.22125 1.04731 1.03196 0.88729 1.23164 0.95360 1.02101 1.00800 1.23078 1.00381 0.98890 0.97775 0.93419 0.92292 0.94310 0.91992 0.75662 0.86606 0.86051 0.93006 0.93413 0.92684 0.92578 0.87382 0.88459 0.87768 0.87212 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.02 9.47 71.98 0.68 -5.34 16 2 C 0.23 10.89 2.22 44.25 0.10 10.98 16 3 H 0.03 1.54 4.73 -2.39 -0.01 1.53 16 4 C -0.53 -28.37 9.05 25.60 0.23 -28.14 16 5 H 0.06 3.29 8.06 -2.91 -0.02 3.27 16 6 C 0.03 1.80 5.47 84.65 0.46 2.26 16 7 N -0.93 -55.35 13.96 21.45 0.30 -55.05 16 8 Si 0.93 44.51 26.99 68.60 1.85 46.36 16 9 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.26 -12.00 6.82 99.48 0.68 -11.32 16 12 N -0.70 -27.19 5.07 -446.09 -2.26 -29.45 16 13 C 0.50 18.37 7.79 87.66 0.68 19.05 16 14 O -0.60 -26.48 15.64 -3.02 -0.05 -26.53 16 15 C -0.13 -3.31 6.07 29.85 0.18 -3.13 16 16 C 0.08 2.25 5.23 71.98 0.38 2.62 16 17 O -0.40 -9.88 10.34 -148.98 -1.54 -11.42 16 18 C 0.09 1.76 6.22 71.98 0.45 2.21 16 19 C -0.17 -2.85 6.06 -10.80 -0.07 -2.92 16 20 C -0.18 -2.41 10.18 30.59 0.31 -2.10 16 21 C -0.16 -2.04 10.25 30.60 0.31 -1.73 16 22 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.41 13.66 8.59 -92.72 -0.80 12.86 16 27 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 28 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 30 H 0.05 1.34 8.10 -2.38 -0.02 1.33 16 31 H 0.05 1.03 7.87 -2.39 -0.02 1.01 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.10 1.27 8.03 -2.39 -0.02 1.25 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -65.90 314.25 2.24 -63.66 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.22 Total: 18.66 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 3.72 Total: -6.23 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -1.96 Total: -84.51 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -1.59 Total: -37.95 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.85 Total: 46.36 kcal Total: -65.90 2.24 -63.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434078432.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.076 kcal (2) G-P(sol) polarization free energy of solvation -65.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds