Wall clock time and date at job start Mon Mar 30 2020 03:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47301 * 2 1 4 4 C 1.50706 * 109.47110 * 240.00310 * 2 1 3 5 5 H 1.07995 * 120.00348 * 239.99436 * 4 2 1 6 6 C 1.37883 * 119.99768 * 59.99931 * 4 2 1 7 7 N 1.31515 * 119.99868 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99669 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46921 * 89.99998 * 8 6 4 10 10 H 1.48500 * 109.46862 * 209.99641 * 8 6 4 11 11 H 1.48496 * 109.47107 * 330.00007 * 8 6 4 12 12 C 1.50698 * 109.47563 * 120.00206 * 2 1 3 13 13 O 1.21282 * 120.00162 * 119.99937 * 12 2 1 14 14 N 1.34775 * 119.99840 * 300.00081 * 12 2 1 15 15 C 1.46500 * 119.99695 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.46944 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.52314 * 54.99961 * 16 15 14 18 18 C 1.53179 * 109.57537 * 175.15695 * 16 15 14 19 19 C 1.53170 * 109.03827 * 176.91747 * 18 16 15 20 20 C 1.53092 * 109.16424 * 303.02003 * 19 18 16 21 21 O 1.42909 * 109.41369 * 57.60525 * 20 19 18 22 22 C 1.42900 * 114.10163 * 298.84292 * 21 20 19 23 23 H 1.08999 * 109.46878 * 299.99680 * 1 2 3 24 24 H 1.09000 * 109.47113 * 59.99680 * 1 2 3 25 25 H 1.09001 * 109.46796 * 180.02562 * 1 2 3 26 26 H 0.97003 * 119.99418 * 180.02562 * 7 6 4 27 27 H 0.97000 * 120.00381 * 0.02562 * 14 12 2 28 28 H 1.08999 * 109.47527 * 60.00379 * 15 14 12 29 29 H 1.09001 * 109.47556 * 300.00123 * 15 14 12 30 30 H 1.09005 * 109.54274 * 296.78698 * 18 16 15 31 31 H 1.09009 * 109.54120 * 57.05030 * 18 16 15 32 32 H 1.08998 * 109.52614 * 183.11927 * 19 18 16 33 33 H 1.08997 * 109.52536 * 62.92486 * 19 18 16 34 34 H 1.09001 * 109.48181 * 297.63099 * 20 19 18 35 35 H 1.08998 * 109.48544 * 177.59005 * 20 19 18 36 36 H 1.09001 * 109.47755 * 301.17703 * 22 21 20 37 37 H 1.08997 * 109.48942 * 181.14328 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3213 -1.1201 -4.0081 9 1 1.3427 -2.1614 -4.4120 10 1 2.4864 -0.1411 -5.1124 11 1 3.6292 -1.7581 -3.7124 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7069 -0.2500 2.4545 15 6 2.1949 -0.9410 3.6506 16 6 1.6845 -0.2201 4.8999 17 1 0.5981 -0.1414 4.8568 18 6 2.0914 -1.0076 6.1491 19 6 1.6421 -0.2367 7.3941 20 6 2.2559 1.1655 7.3657 21 8 1.8630 1.8318 6.1641 22 6 2.2966 1.1815 4.9678 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7080 1.1610 -3.4844 27 1 1.1489 0.5384 2.5436 28 1 3.2849 -0.9414 3.6508 29 1 1.8312 -1.9686 3.6504 30 1 1.6134 -1.9871 6.1345 31 1 3.1746 -1.1292 6.1667 32 1 1.9764 -0.7625 8.2885 33 1 0.5550 -0.1583 7.4015 34 1 3.3426 1.0874 7.3993 35 1 1.9053 1.7333 8.2275 36 1 3.3839 1.1036 4.9701 37 1 1.9754 1.7607 4.1021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596872142.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:38 Heat of formation + Delta-G solvation = -107.906833 kcal Electronic energy + Delta-G solvation = -17584.309528 eV Core-core repulsion = 14746.690417 eV Total energy + Delta-G solvation = -2837.619112 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.75068 -38.55450 -35.22117 -33.69758 -33.25251 -31.33693 -30.13898 -26.10090 -25.20127 -25.09817 -22.86883 -21.61827 -20.39042 -19.21385 -16.59066 -16.39426 -16.19524 -15.73608 -15.18171 -15.09233 -14.57534 -14.31651 -14.04130 -13.45733 -13.04302 -12.82980 -12.66422 -12.28750 -12.00198 -11.46311 -11.38822 -11.15340 -11.01304 -10.90987 -10.68822 -10.63103 -10.45800 -10.23479 -9.93359 -9.60936 -8.94780 -8.59293 -8.42508 -8.29742 -6.00715 -4.03696 3.35474 3.41041 3.47988 3.70769 3.77344 3.89491 4.49171 4.55804 4.62244 4.72610 4.73247 5.00304 5.17813 5.27337 5.32516 5.44194 5.53405 5.58161 5.59983 5.75266 5.87707 5.92644 5.98602 6.16365 6.34514 6.64671 6.85565 6.95419 7.03510 7.09870 7.50373 7.78334 8.01549 8.17494 8.47467 9.05386 9.26925 9.61814 11.06912 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.053707 B = 0.004545 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.221650 B = 6159.670944 C = 6397.046681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.547 6.547 14 N -0.749 5.749 15 C 0.127 3.873 16 C -0.134 4.134 17 H 0.085 0.915 18 C -0.115 4.115 19 C -0.155 4.155 20 C 0.058 3.942 21 O -0.382 6.382 22 C 0.065 3.935 23 H 0.012 0.988 24 H 0.093 0.907 25 H 0.030 0.970 26 H 0.260 0.740 27 H 0.395 0.605 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 1.059 18.362 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.070 0.930 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.423 6.423 14 N -0.403 5.403 15 C 0.003 3.997 16 C -0.153 4.153 17 H 0.104 0.896 18 C -0.153 4.153 19 C -0.193 4.193 20 C -0.019 4.019 21 O -0.301 6.301 22 C -0.012 4.012 23 H 0.031 0.969 24 H 0.111 0.889 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.230 0.770 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.399 0.606 18.121 18.136 hybrid contribution 0.123 -0.358 -0.725 0.818 sum 0.522 0.248 17.396 17.406 Atomic orbital electron populations 1.21739 0.96557 0.99773 1.00923 1.18879 0.94142 0.96851 0.89417 0.92996 1.21153 1.30915 1.12766 0.89031 0.90823 1.24955 0.95160 0.95063 0.99104 1.69875 1.37168 1.23114 1.23493 0.86454 0.79445 0.79240 0.82086 1.20698 1.21305 1.19762 1.21979 0.78409 0.84257 0.84499 1.90527 1.38025 1.26941 1.86825 1.46335 1.55597 1.32746 1.05665 1.21139 0.98951 0.96168 0.83455 1.22043 1.02060 0.96201 0.94990 0.89635 1.21566 1.01557 0.98915 0.93292 1.22182 1.01938 0.96677 0.98458 1.22580 0.98431 0.92999 0.87853 1.87949 1.78273 1.50079 1.13785 1.22684 0.98296 0.92674 0.87553 0.96924 0.88853 0.95054 0.92994 0.77048 0.92109 0.91908 0.91055 0.91473 0.90880 0.90981 0.93270 0.89081 0.92868 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.35 8.37 -34.44 -0.29 -14.63 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.36 11.32 55.43 0.63 -24.73 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 12 C 0.52 11.91 7.15 -10.99 -0.08 11.83 16 13 O -0.55 -14.45 15.46 5.56 0.09 -14.37 16 14 N -0.75 -12.91 5.20 -60.29 -0.31 -13.23 16 15 C 0.13 1.84 5.07 -4.04 -0.02 1.82 16 16 C -0.13 -1.50 2.42 -90.48 -0.22 -1.72 16 17 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 18 C -0.12 -1.07 5.32 -26.55 -0.14 -1.22 16 19 C -0.15 -1.26 6.14 -26.60 -0.16 -1.42 16 20 C 0.06 0.52 6.84 37.21 0.25 0.77 16 21 O -0.38 -4.52 10.77 -35.23 -0.38 -4.90 16 22 C 0.06 0.74 5.97 37.21 0.22 0.96 16 23 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 24 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 27 H 0.40 5.95 7.09 -40.82 -0.29 5.66 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 1.13 7.26 -51.93 -0.38 0.75 16 LS Contribution 298.45 15.07 4.50 4.50 Total: -1.00 -31.66 298.45 -6.88 -38.55 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.94 Total: 1.56 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.44 Total: -4.34 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.31 Total: -37.96 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.29 Total: -19.27 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.66 -6.88 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596872142.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.358 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds