Wall clock time and date at job start Mon Mar 30 2020 03:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46944 * 2 1 4 4 C 1.50697 * 109.47146 * 120.00395 * 2 1 3 5 5 H 1.07999 * 120.00161 * 120.00078 * 4 2 1 6 6 C 1.37875 * 120.00087 * 300.00190 * 4 2 1 7 7 N 1.31518 * 120.00024 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00125 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47002 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47313 * 119.99820 * 8 6 4 11 11 H 1.48498 * 109.47090 * 239.99515 * 8 6 4 12 12 C 1.50698 * 109.46860 * 240.00242 * 2 1 3 13 13 O 1.21280 * 120.00209 * 239.99326 * 12 2 1 14 14 N 1.34778 * 120.00171 * 60.00026 * 12 2 1 15 15 C 1.46496 * 120.00201 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.47259 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.52228 * 305.12821 * 16 15 14 18 18 C 1.53178 * 109.52445 * 184.99901 * 16 15 14 19 19 C 1.53178 * 109.03511 * 183.11206 * 18 16 15 20 20 C 1.53093 * 109.16255 * 56.98447 * 19 18 16 21 21 O 1.42904 * 109.42351 * 302.38111 * 20 19 18 22 22 C 1.42930 * 114.08305 * 61.15476 * 21 20 19 23 23 H 1.09008 * 109.46833 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46933 * 299.99338 * 1 2 3 25 25 H 1.08994 * 109.47444 * 59.99531 * 1 2 3 26 26 H 0.96998 * 119.99974 * 180.02562 * 7 6 4 27 27 H 0.97005 * 119.99919 * 359.97438 * 14 12 2 28 28 H 1.08994 * 109.47219 * 60.00132 * 15 14 12 29 29 H 1.08999 * 109.47228 * 299.99601 * 15 14 12 30 30 H 1.09002 * 109.54068 * 63.24617 * 18 16 15 31 31 H 1.08992 * 109.61712 * 303.02756 * 18 16 15 32 32 H 1.09000 * 109.52619 * 297.07706 * 19 18 16 33 33 H 1.08998 * 109.51869 * 176.88944 * 19 18 16 34 34 H 1.09002 * 109.48198 * 62.37219 * 20 19 18 35 35 H 1.08999 * 109.48029 * 182.39833 * 20 19 18 36 36 H 1.09003 * 109.47243 * 178.86599 * 22 21 20 37 37 H 1.08992 * 109.47948 * 58.83460 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2396 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3225 -1.1198 4.0078 9 1 3.1475 -2.2866 3.6035 10 1 3.1473 -0.1861 4.8160 11 1 1.1679 -1.5869 4.8164 12 6 2.0323 -0.7104 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 6 2.1954 -0.9401 -3.6508 16 6 1.6858 -0.2185 -4.9000 17 1 0.5997 -0.1378 -4.8565 18 6 2.0909 -1.0082 -6.1485 19 6 1.6436 -0.2373 -7.3942 20 6 2.2611 1.1633 -7.3671 21 8 1.8698 1.8320 -6.1663 22 6 2.3017 1.1814 -4.9692 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.7095 1.1615 3.4845 27 1 1.1487 0.5386 -2.5436 28 1 1.8325 -1.9678 -3.6510 29 1 3.2854 -0.9396 -3.6507 30 1 1.6103 -1.9864 -6.1329 31 1 3.1733 -1.1341 -6.1666 32 1 0.5567 -0.1560 -7.4017 33 1 1.9765 -0.7649 -8.2880 34 1 3.3476 1.0823 -7.4005 35 1 1.9122 1.7312 -8.2295 36 1 1.9818 1.7625 -4.1042 37 1 3.3886 1.1007 -4.9712 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596872143.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:41 Heat of formation + Delta-G solvation = -107.947460 kcal Electronic energy + Delta-G solvation = -17583.893416 eV Core-core repulsion = 14746.272543 eV Total energy + Delta-G solvation = -2837.620873 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.74893 -38.55443 -35.22208 -33.69875 -33.25130 -31.33715 -30.13954 -26.09966 -25.20258 -25.10019 -22.86902 -21.61852 -20.39213 -19.21342 -16.59016 -16.39512 -16.19636 -15.73749 -15.18371 -15.09182 -14.57504 -14.31440 -14.04051 -13.45549 -13.04169 -12.82933 -12.66513 -12.28981 -12.00401 -11.46804 -11.38915 -11.15483 -11.01419 -10.91298 -10.68449 -10.62993 -10.45938 -10.22480 -9.93613 -9.61039 -8.93710 -8.59451 -8.42470 -8.30159 -6.00918 -4.03837 3.33843 3.41278 3.49665 3.70799 3.77349 3.89550 4.49212 4.55730 4.62267 4.72615 4.73240 5.00257 5.17781 5.27324 5.32399 5.44180 5.53404 5.58171 5.59990 5.75284 5.87691 5.92564 5.98653 6.16368 6.34480 6.64621 6.85483 6.95333 7.03352 7.09899 7.50305 7.78217 8.01571 8.17396 8.47411 9.05718 9.26931 9.61795 11.06774 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.053702 B = 0.004544 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.267901 B = 6160.938548 C = 6397.431570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.519 3.481 13 O -0.547 6.547 14 N -0.749 5.749 15 C 0.127 3.873 16 C -0.134 4.134 17 H 0.085 0.915 18 C -0.115 4.115 19 C -0.155 4.155 20 C 0.058 3.942 21 O -0.382 6.382 22 C 0.065 3.935 23 H 0.030 0.970 24 H 0.093 0.907 25 H 0.012 0.988 26 H 0.260 0.740 27 H 0.395 0.605 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.059 1.041 -18.374 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.309 3.691 13 O -0.423 6.423 14 N -0.403 5.403 15 C 0.003 3.997 16 C -0.153 4.153 17 H 0.104 0.896 18 C -0.153 4.153 19 C -0.193 4.193 20 C -0.019 4.019 21 O -0.301 6.301 22 C -0.012 4.012 23 H 0.050 0.950 24 H 0.111 0.889 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.230 0.770 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.404 0.582 -18.136 18.150 hybrid contribution 0.125 -0.338 0.731 0.815 sum 0.529 0.244 -17.405 17.415 Atomic orbital electron populations 1.21739 0.96551 0.99774 1.00925 1.18884 0.94152 0.96856 0.89434 0.92996 1.21193 1.30808 1.12760 0.89019 0.90761 1.24955 0.95153 0.95087 0.99118 1.69883 1.37253 1.23129 1.23389 0.86408 0.78613 0.79784 0.82508 1.19580 1.21056 1.21073 1.21979 0.78412 0.84256 0.84499 1.90527 1.38020 1.26936 1.86825 1.46337 1.55583 1.32763 1.05665 1.21139 0.98945 0.96177 0.83455 1.22041 1.02056 0.96195 0.94988 0.89625 1.21564 1.01575 0.98898 0.93299 1.22184 1.01932 0.96685 0.98453 1.22578 0.98429 0.92985 0.87876 1.87956 1.78425 1.49912 1.13790 1.22689 0.98293 0.92689 0.87535 0.95049 0.88858 0.96918 0.93049 0.77050 0.91899 0.92119 0.91066 0.91473 0.90981 0.90882 0.93270 0.89085 0.88427 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.70 2.64 -92.92 -0.25 0.45 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.32 8.37 -34.44 -0.29 -14.61 16 5 H 0.07 2.26 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.35 11.32 55.43 0.63 -24.73 16 8 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.52 11.90 7.15 -10.99 -0.08 11.83 16 13 O -0.55 -14.45 15.46 5.56 0.09 -14.37 16 14 N -0.75 -12.91 5.20 -60.30 -0.31 -13.22 16 15 C 0.13 1.84 5.07 -4.04 -0.02 1.82 16 16 C -0.13 -1.49 2.42 -90.48 -0.22 -1.71 16 17 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 18 C -0.12 -1.07 5.31 -26.55 -0.14 -1.22 16 19 C -0.15 -1.26 6.14 -26.59 -0.16 -1.42 16 20 C 0.06 0.51 6.84 37.21 0.25 0.77 16 21 O -0.38 -4.52 10.77 -35.23 -0.38 -4.90 16 22 C 0.06 0.74 5.97 37.21 0.22 0.96 16 23 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 24 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 25 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.40 5.95 7.11 -40.82 -0.29 5.66 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 1.13 7.27 -51.93 -0.38 0.75 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 298.47 15.07 4.50 4.50 Total: -1.00 -31.69 298.47 -6.89 -38.58 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.94 Total: 1.53 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -0.44 Total: -4.34 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.31 Total: -37.95 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.29 Total: -19.27 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.69 -6.89 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596872143.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.369 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds