Wall clock time and date at job start Mon Mar 30 2020 03:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31516 * 119.99913 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 C 1.50707 * 109.47019 * 240.00372 * 2 1 3 13 13 O 1.21282 * 119.99521 * 240.00257 * 12 2 1 14 14 N 1.34765 * 120.00198 * 59.99825 * 12 2 1 15 15 C 1.46506 * 120.00059 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46899 * 179.97438 * 15 14 12 17 17 H 1.09005 * 109.52455 * 55.12727 * 16 15 14 18 18 C 1.53181 * 109.51997 * 175.31083 * 16 15 14 19 19 C 1.53183 * 109.03585 * 176.88763 * 18 16 15 20 20 C 1.53088 * 109.16196 * 303.02405 * 19 18 16 21 21 O 1.42898 * 109.42062 * 57.60836 * 20 19 18 22 22 C 1.42912 * 114.09498 * 298.84352 * 21 20 19 23 23 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 25 25 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 26 26 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 27 27 H 0.97000 * 120.00275 * 359.97438 * 14 12 2 28 28 H 1.09000 * 109.46933 * 299.99432 * 15 14 12 29 29 H 1.08997 * 109.47051 * 60.00116 * 15 14 12 30 30 H 1.09002 * 109.54679 * 296.75710 * 18 16 15 31 31 H 1.09000 * 109.54107 * 57.02005 * 18 16 15 32 32 H 1.08998 * 109.51830 * 183.11826 * 19 18 16 33 33 H 1.08996 * 109.52302 * 62.92783 * 19 18 16 34 34 H 1.09006 * 109.47539 * 297.62181 * 20 19 18 35 35 H 1.08997 * 109.48097 * 177.59816 * 20 19 18 36 36 H 1.09000 * 109.47698 * 301.16924 * 22 21 20 37 37 H 1.09004 * 109.48566 * 181.14468 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8027 0.8726 2.6998 10 1 0.9761 1.9950 3.9068 11 1 0.8471 2.1764 1.4920 12 6 2.0323 -0.7104 -1.2306 13 8 2.7295 -1.6965 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 6 2.1946 -0.9408 -3.6508 16 6 1.6841 -0.2198 -4.9000 17 1 1.9740 0.8302 -4.8586 18 6 2.2876 -0.8699 -6.1488 19 6 1.7097 -0.1910 -7.3944 20 6 0.1830 -0.2993 -7.3631 21 8 -0.3111 0.2968 -6.1621 22 6 0.1584 -0.3271 -4.9651 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.9027 -0.5285 4.4375 27 1 1.1487 0.5385 -2.5436 28 1 3.2846 -0.9412 -3.6510 29 1 1.8308 -1.9683 -3.6507 30 1 3.3707 -0.7478 -6.1363 31 1 2.0393 -1.9312 -6.1635 32 1 2.0917 -0.6841 -8.2883 33 1 2.0002 0.8595 -7.4045 34 1 -0.1075 -1.3495 -7.3939 35 1 -0.2360 0.2192 -8.2254 36 1 -0.1326 -1.3775 -4.9645 37 1 -0.2784 0.1716 -4.0998 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596872144.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:44 Heat of formation + Delta-G solvation = -98.031819 kcal Electronic energy + Delta-G solvation = -17674.497279 eV Core-core repulsion = 14837.306380 eV Total energy + Delta-G solvation = -2837.190899 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.83481 -38.71583 -35.31949 -33.80249 -33.32737 -31.56710 -30.75505 -26.27309 -25.26441 -25.11726 -23.09313 -21.69754 -20.46939 -19.27817 -16.74932 -16.59164 -16.43438 -15.83629 -15.37927 -15.15990 -14.58490 -14.46259 -14.24707 -13.52885 -13.08974 -13.03534 -12.87769 -12.49229 -12.27090 -11.97040 -11.57567 -11.45311 -11.24423 -10.99455 -10.92668 -10.56647 -10.52311 -10.27243 -9.67334 -9.62110 -9.08330 -8.69662 -8.58714 -8.52367 -6.03502 -4.03639 3.24752 3.32358 3.37809 3.59199 3.66077 3.74874 4.39378 4.49844 4.56139 4.64604 4.67551 4.94230 5.11356 5.21391 5.26000 5.38193 5.47850 5.51628 5.54094 5.69264 5.74098 5.85371 5.89619 5.99640 6.12529 6.14733 6.34056 6.45951 6.73930 6.95327 6.97183 7.17841 7.56376 8.12468 8.57135 9.09943 9.17445 9.55620 11.09543 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045740 B = 0.005035 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.011445 B = 5559.471149 C = 5982.558183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.006 4.006 3 H 0.052 0.948 4 C -0.505 4.505 5 H 0.093 0.907 6 C 0.070 3.930 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.267 1.267 12 C 0.527 3.473 13 O -0.532 6.532 14 N -0.749 5.749 15 C 0.127 3.873 16 C -0.134 4.134 17 H 0.085 0.915 18 C -0.115 4.115 19 C -0.155 4.155 20 C 0.058 3.942 21 O -0.383 6.383 22 C 0.064 3.936 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.032 0.968 26 H 0.264 0.736 27 H 0.394 0.606 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.223 3.650 -21.315 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 H 0.070 0.930 4 C -0.544 4.544 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.316 3.684 13 O -0.406 6.406 14 N -0.405 5.405 15 C 0.003 3.997 16 C -0.153 4.153 17 H 0.104 0.896 18 C -0.153 4.153 19 C -0.193 4.193 20 C -0.019 4.019 21 O -0.301 6.301 22 C -0.012 4.012 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.228 0.772 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.812 3.052 -21.010 21.570 hybrid contribution -0.644 0.961 0.172 1.169 sum -4.456 4.012 -20.838 21.683 Atomic orbital electron populations 1.22111 0.97328 1.01491 0.99221 1.19315 0.93210 0.97553 0.92654 0.93049 1.20948 1.31940 1.14207 0.87257 0.88916 1.24990 0.95848 0.96585 0.95759 1.69888 1.45530 1.40196 0.97859 0.86903 0.80694 0.83814 0.77056 1.20521 1.22332 1.19263 1.21271 0.78892 0.84289 0.83957 1.90582 1.37159 1.26314 1.86531 1.46288 1.55721 1.32728 1.05723 1.21168 0.99260 0.96089 0.83173 1.22046 0.96730 1.01515 0.95028 0.89632 1.21568 1.00716 0.99846 0.93213 1.22183 0.96592 1.01990 0.98493 1.22583 0.93400 0.98079 0.87811 1.87946 1.70457 1.57921 1.13794 1.22681 0.92856 0.98162 0.87527 0.92363 0.93298 0.94858 0.92586 0.77170 0.91650 0.91894 0.90983 0.91403 0.90820 0.90991 0.93221 0.89056 0.92794 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.57 37.15 0.32 -2.63 16 2 C -0.01 -0.13 2.23 -92.93 -0.21 -0.34 16 3 H 0.05 1.17 7.20 -51.93 -0.37 0.80 16 4 C -0.51 -14.73 8.96 -34.44 -0.31 -15.04 16 5 H 0.09 3.08 7.00 -52.48 -0.37 2.72 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 8 Si 0.89 21.44 24.37 -169.99 -4.14 17.30 16 9 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 10 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.27 -6.02 6.53 56.52 0.37 -5.65 16 12 C 0.53 11.54 7.15 -10.99 -0.08 11.46 16 13 O -0.53 -13.83 15.46 5.56 0.09 -13.74 16 14 N -0.75 -11.99 5.20 -60.29 -0.31 -12.30 16 15 C 0.13 1.73 5.07 -4.04 -0.02 1.71 16 16 C -0.13 -1.39 2.43 -90.48 -0.22 -1.61 16 17 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 18 C -0.12 -1.00 5.31 -26.54 -0.14 -1.15 16 19 C -0.15 -1.17 6.14 -26.59 -0.16 -1.34 16 20 C 0.06 0.48 6.84 37.20 0.25 0.74 16 21 O -0.38 -4.26 10.77 -35.23 -0.38 -4.64 16 22 C 0.06 0.68 5.97 37.20 0.22 0.90 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 25 H 0.03 0.53 7.56 -51.93 -0.39 0.14 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.39 5.28 7.08 -40.82 -0.29 4.99 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 1.01 7.25 -51.93 -0.38 0.64 16 LS Contribution 291.61 15.07 4.39 4.39 Total: -1.00 -33.75 291.61 -5.82 -39.57 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.80 Total: 1.91 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -0.44 Total: -5.36 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.46 Total: -39.43 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.29 Total: -18.38 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.14 Total: 17.30 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.75 -5.82 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596872144.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.462 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds