Wall clock time and date at job start Mon Mar 30 2020 03:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47471 * 2 1 4 4 C 1.37103 * 119.99583 * 97.28007 * 3 2 1 5 5 H 1.07993 * 119.99958 * 163.90283 * 4 3 2 6 6 C 1.38946 * 119.99862 * 343.89834 * 4 3 2 7 7 N 1.31415 * 120.00665 * 350.21695 * 6 4 3 8 8 Si 1.86801 * 119.99797 * 170.21640 * 6 4 3 9 9 H 1.48497 * 109.46967 * 90.00134 * 8 6 4 10 10 H 1.48499 * 109.47234 * 209.99871 * 8 6 4 11 11 H 1.48503 * 109.47279 * 329.99888 * 8 6 4 12 12 C 1.34768 * 120.00085 * 277.28032 * 3 2 1 13 13 O 1.21300 * 120.00021 * 183.88701 * 12 3 2 14 14 C 1.50697 * 120.00380 * 3.88770 * 12 3 2 15 15 H 1.08999 * 110.43292 * 32.93698 * 14 12 3 16 16 C 1.55238 * 110.46850 * 270.28412 * 14 12 3 17 17 C 1.54887 * 102.58648 * 203.39366 * 16 14 12 18 18 C 1.54262 * 104.31729 * 37.93058 * 17 16 14 19 19 H 1.09004 * 110.03276 * 95.60411 * 18 17 16 20 20 O 1.42903 * 110.03875 * 217.03978 * 18 17 16 21 21 C 1.42904 * 113.99775 * 268.55056 * 20 18 17 22 22 C 1.53882 * 106.59682 * 336.32432 * 18 17 16 23 23 H 1.09000 * 109.47111 * 66.46442 * 1 2 3 24 24 H 1.08998 * 109.47586 * 186.46919 * 1 2 3 25 25 H 1.08998 * 109.47042 * 306.47061 * 1 2 3 26 26 H 1.09004 * 109.47250 * 240.00523 * 2 1 3 27 27 H 1.08995 * 109.47580 * 120.00715 * 2 1 3 28 28 H 0.96991 * 120.00536 * 179.97438 * 7 6 4 29 29 H 1.09003 * 110.89600 * 85.10394 * 16 14 12 30 30 H 1.08997 * 110.76613 * 321.62338 * 16 14 12 31 31 H 1.09005 * 110.48894 * 279.18716 * 17 16 14 32 32 H 1.09002 * 110.49033 * 156.68082 * 17 16 14 33 33 H 1.09000 * 109.46728 * 179.97438 * 21 20 18 34 34 H 1.08999 * 109.46684 * 299.99288 * 21 20 18 35 35 H 1.08996 * 109.47164 * 59.99823 * 21 20 18 36 36 H 1.09005 * 110.02791 * 119.28257 * 22 18 17 37 37 H 1.08996 * 110.02795 * 240.71175 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3888 1.9773 1.1778 5 1 2.9830 2.8789 1.1632 6 6 1.9996 1.4212 2.3902 7 7 1.1229 0.4426 2.4132 8 14 2.7226 2.0649 3.9879 9 1 1.8748 3.1687 4.5056 10 1 2.7708 0.9674 4.9870 11 1 4.0970 2.5703 3.7411 12 6 2.1036 2.0658 -1.1577 13 8 2.5738 3.1840 -1.1679 14 6 1.6148 1.4423 -2.4396 15 1 0.7632 0.7904 -2.2451 16 6 2.7595 0.6535 -3.1306 17 6 2.3051 0.6268 -4.6111 18 6 1.6753 2.0159 -4.8420 19 1 2.4111 2.6917 -5.2780 20 8 0.5421 1.9024 -5.7051 21 6 0.8485 2.0665 -7.0912 22 6 1.2364 2.5345 -3.4612 23 1 -0.3633 0.4104 -0.9422 24 1 -0.3634 -1.0211 0.1158 25 1 -0.3633 0.6108 0.8264 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.8515 0.0542 3.2595 29 1 2.8315 -0.3578 -2.7303 30 1 3.7085 1.1795 -3.0272 31 1 1.5656 -0.1583 -4.7691 32 1 3.1610 0.4816 -5.2703 33 1 -0.0637 1.9659 -7.6793 34 1 1.2787 3.0548 -7.2536 35 1 1.5641 1.3038 -7.3979 36 1 1.7592 3.4619 -3.2273 37 1 0.1590 2.6995 -3.4497 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:01 Heat of formation + Delta-G solvation = -78.917282 kcal Electronic energy + Delta-G solvation = -18277.486730 eV Core-core repulsion = 15441.124700 eV Total energy + Delta-G solvation = -2836.362030 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.40110 -37.96259 -35.49995 -34.76653 -31.69147 -29.42181 -28.51779 -28.25831 -26.05161 -24.70300 -22.31756 -20.96176 -20.34070 -18.29361 -17.08858 -16.68522 -16.03978 -15.54573 -14.81950 -14.52023 -14.11392 -13.64705 -13.45919 -13.35433 -12.78706 -12.51433 -12.12787 -11.82093 -11.55791 -11.31232 -11.17631 -11.06970 -10.97453 -10.74723 -10.56949 -10.45975 -10.26998 -10.24394 -9.92908 -9.77102 -9.40153 -8.86047 -8.27657 -7.63240 -6.20853 -3.79430 3.18650 3.27350 3.33108 3.84136 3.97643 4.16732 4.82083 4.84418 4.98384 5.18980 5.28411 5.34392 5.38256 5.55755 5.60680 5.80009 5.80851 5.91468 6.03207 6.09658 6.12718 6.23463 6.34151 6.43163 6.61254 6.65876 6.73476 6.79289 6.91287 7.37433 7.41452 7.56275 7.77240 8.18184 8.59099 9.24293 9.51936 10.06739 10.75092 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046458 B = 0.005966 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.549530 B = 4692.236532 C = 4935.381951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.121 3.879 3 N -0.444 5.444 4 C -0.297 4.297 5 H 0.100 0.900 6 C 0.024 3.976 7 N -0.881 5.881 8 Si 0.927 3.073 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.454 3.546 13 O -0.595 6.595 14 C -0.106 4.106 15 H 0.092 0.908 16 C -0.107 4.107 17 C -0.143 4.143 18 C 0.085 3.915 19 H 0.062 0.938 20 O -0.385 6.385 21 C 0.031 3.969 22 C -0.108 4.108 23 H 0.022 0.978 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.028 0.972 27 H 0.110 0.890 28 H 0.264 0.736 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.091 0.909 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.163 -2.899 -11.753 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.002 4.002 3 N -0.161 5.161 4 C -0.425 4.425 5 H 0.117 0.883 6 C -0.177 4.177 7 N -0.522 5.522 8 Si 0.754 3.246 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.196 1.196 12 C 0.242 3.758 13 O -0.480 6.480 14 C -0.128 4.128 15 H 0.110 0.890 16 C -0.145 4.145 17 C -0.181 4.181 18 C 0.028 3.972 19 H 0.080 0.920 20 O -0.304 6.304 21 C -0.066 4.066 22 C -0.146 4.146 23 H 0.040 0.960 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.128 0.872 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.110 0.890 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.197 -2.515 -11.492 11.765 hybrid contribution 0.405 0.099 0.660 0.780 sum 0.207 -2.416 -10.832 11.100 Atomic orbital electron populations 1.22103 0.96948 1.00526 1.00451 1.21520 0.94323 0.83648 1.00727 1.43770 1.55499 1.11285 1.05589 1.19754 1.30249 1.10196 0.82280 0.88273 1.25261 0.96094 0.97015 0.99367 1.70062 1.30049 1.25818 1.26295 0.85912 0.79479 0.78173 0.81016 1.20505 1.20937 1.19634 1.19876 0.84670 0.86233 0.84985 1.90470 1.50605 1.20546 1.86413 1.22126 0.98990 0.97504 0.94180 0.89039 1.22430 0.98282 1.00207 0.93630 1.22879 1.00198 0.97875 0.97160 1.22903 0.87252 0.95900 0.91182 0.92005 1.87966 1.33395 1.93045 1.15952 1.22726 1.01269 0.99468 0.83121 1.22133 1.02279 0.99492 0.90654 0.95950 0.94328 0.89641 0.95377 0.87240 0.92490 0.91028 0.91059 0.90580 0.91902 0.90085 0.94290 0.94367 0.89007 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.31 37.16 0.35 -2.69 16 2 C 0.12 2.75 4.93 -4.04 -0.02 2.73 16 3 N -0.44 -11.41 2.64 -114.81 -0.30 -11.71 16 4 C -0.30 -8.27 9.44 -14.93 -0.14 -8.41 16 5 H 0.10 2.91 7.28 -52.49 -0.38 2.53 16 6 C 0.02 0.62 5.18 -17.47 -0.09 0.52 16 7 N -0.88 -22.63 8.15 55.50 0.45 -22.18 16 8 Si 0.93 20.74 29.56 -169.99 -5.03 15.72 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 C 0.45 11.22 6.73 -10.99 -0.07 11.15 16 13 O -0.59 -16.61 15.23 5.54 0.08 -16.53 16 14 C -0.11 -2.06 2.30 -89.92 -0.21 -2.27 16 15 H 0.09 1.75 5.09 -51.93 -0.26 1.48 16 16 C -0.11 -1.76 6.11 -24.55 -0.15 -1.91 16 17 C -0.14 -1.98 6.54 -25.08 -0.16 -2.14 16 18 C 0.09 1.27 3.38 -25.61 -0.09 1.18 16 19 H 0.06 0.85 7.82 -51.93 -0.41 0.44 16 20 O -0.38 -5.62 10.26 -35.23 -0.36 -5.98 16 21 C 0.03 0.33 10.85 101.05 1.10 1.42 16 22 C -0.11 -1.94 6.13 -25.61 -0.16 -2.09 16 23 H 0.02 0.44 6.15 -51.93 -0.32 0.12 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 2.09 6.55 -51.93 -0.34 1.75 16 26 H 0.03 0.56 6.00 -51.93 -0.31 0.25 16 27 H 0.11 2.69 5.81 -51.93 -0.30 2.38 16 28 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 29 H 0.07 1.10 7.14 -51.93 -0.37 0.73 16 30 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 31 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.37 8.10 -51.93 -0.42 -0.05 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 1.81 6.79 -51.93 -0.35 1.46 16 37 H 0.07 1.31 7.95 -51.93 -0.41 0.89 16 LS Contribution 289.76 15.07 4.37 4.37 Total: -1.00 -29.81 289.76 -5.98 -35.79 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.55 Total: 3.04 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 0.35 Total: -2.52 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.15 Total: -33.89 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.28 Total: -22.51 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.81 -5.98 -35.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.126 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds