Wall clock time and date at job start Mon Mar 30 2020 03:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47021 * 2 1 4 4 C 1.37096 * 119.99915 * 89.24047 * 3 2 1 5 5 H 1.08005 * 119.99810 * 160.97955 * 4 3 2 6 6 C 1.38951 * 120.00428 * 341.26161 * 4 3 2 7 7 N 1.31408 * 119.99583 * 0.44431 * 6 4 3 8 8 Si 1.86792 * 120.00191 * 180.45321 * 6 4 3 9 9 H 1.48505 * 109.47305 * 89.99970 * 8 6 4 10 10 H 1.48505 * 109.47156 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.47238 * 329.99468 * 8 6 4 12 12 C 1.34780 * 120.00252 * 269.24707 * 3 2 1 13 13 O 1.21292 * 119.99708 * 5.54451 * 12 3 2 14 14 C 1.50700 * 120.00132 * 185.54980 * 12 3 2 15 15 H 1.08994 * 110.43027 * 312.83757 * 14 12 3 16 16 C 1.54890 * 110.48368 * 75.37958 * 14 12 3 17 17 C 1.55036 * 102.68153 * 156.51641 * 16 14 12 18 18 C 1.54265 * 104.27802 * 322.23605 * 17 16 14 19 19 H 1.09006 * 110.02599 * 264.22930 * 18 17 16 20 20 O 1.42894 * 110.03319 * 142.80388 * 18 17 16 21 21 C 1.42902 * 114.00275 * 92.82816 * 20 18 17 22 22 C 1.53868 * 106.60388 * 23.51286 * 18 17 16 23 23 H 1.08998 * 109.47008 * 66.76483 * 1 2 3 24 24 H 1.08997 * 109.46569 * 186.75951 * 1 2 3 25 25 H 1.09001 * 109.46803 * 306.75833 * 1 2 3 26 26 H 1.09002 * 109.47089 * 240.00384 * 2 1 3 27 27 H 1.08997 * 109.47560 * 119.99624 * 2 1 3 28 28 H 0.97007 * 120.00068 * 180.02562 * 7 6 4 29 29 H 1.09000 * 110.75830 * 274.92991 * 16 14 12 30 30 H 1.08996 * 110.75758 * 38.30845 * 16 14 12 31 31 H 1.08991 * 110.52733 * 203.48463 * 17 16 14 32 32 H 1.09002 * 110.47774 * 80.95379 * 17 16 14 33 33 H 1.09008 * 109.47158 * 180.02562 * 21 20 18 34 34 H 1.08997 * 109.47354 * 299.99920 * 21 20 18 35 35 H 1.09003 * 109.47212 * 59.99929 * 21 20 18 36 36 H 1.08996 * 110.03670 * 240.71875 * 22 18 17 37 37 H 1.09005 * 110.07339 * 119.31009 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2320 2.0328 1.1872 5 1 2.8643 2.9079 1.2167 6 6 1.6398 1.5639 2.3535 7 7 0.8820 0.4909 2.3200 8 14 1.9207 2.4590 3.9687 9 1 0.8731 3.4961 4.1487 10 1 1.8541 1.4883 5.0907 11 1 3.2581 3.1040 3.9511 12 6 2.2575 2.0116 -1.1671 13 8 1.9740 1.4730 -2.2163 14 6 2.8770 3.3853 -1.1685 15 1 2.3737 4.0304 -0.4484 16 6 4.3908 3.2975 -0.8525 17 6 4.9454 4.6030 -1.4783 18 6 4.1325 4.7772 -2.7777 19 1 4.6854 4.3654 -3.6221 20 8 3.8569 6.1615 -3.0008 21 6 4.8211 6.8209 -3.8239 22 6 2.8174 4.0030 -2.5808 23 1 -0.3633 0.4054 -0.9443 24 1 -0.3632 -1.0205 0.1210 25 1 -0.3633 0.6150 0.8233 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 0.4682 0.1637 3.1341 29 1 4.5604 3.2804 0.2241 30 1 4.8347 2.4232 -1.3285 31 1 6.0067 4.4981 -1.7034 32 1 4.7800 5.4471 -0.8088 33 1 4.5407 7.8674 -3.9448 34 1 5.8025 6.7602 -3.3537 35 1 4.8558 6.3384 -4.8007 36 1 2.7321 3.2155 -3.3295 37 1 1.9684 4.6825 -2.6557 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:03 Heat of formation + Delta-G solvation = -93.795841 kcal Electronic energy + Delta-G solvation = -18291.016611 eV Core-core repulsion = 15454.009398 eV Total energy + Delta-G solvation = -2837.007213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.99087 -39.38581 -37.16535 -36.38370 -33.36089 -31.89512 -29.75180 -29.21358 -26.94051 -26.66636 -24.25755 -22.09603 -21.45243 -20.66333 -18.73132 -18.21672 -17.46638 -16.65337 -16.21952 -16.15695 -15.69046 -15.37255 -15.00858 -14.59627 -14.42671 -14.21924 -13.59964 -13.26357 -13.04860 -12.80696 -12.72811 -12.64198 -12.36933 -12.20542 -12.13358 -11.99062 -11.92649 -11.72291 -11.59895 -11.41685 -10.74541 -10.44091 -10.21075 -9.61626 -8.11312 -5.86769 1.46087 1.51128 1.61337 2.05409 2.33062 2.89119 3.02548 3.19108 3.63247 3.73480 4.06953 4.31439 4.47485 4.50576 4.53760 4.57553 4.62894 4.70348 4.74568 4.82215 4.88708 4.94694 5.00576 5.02621 5.05613 5.15804 5.20341 5.30641 5.40680 5.46489 5.55547 5.91451 5.96779 6.37445 6.56534 7.17683 7.65883 8.05471 8.78993 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026878 B = 0.007382 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.509390 B = 3792.236533 C = 4549.938502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.143 3.857 3 N -0.453 5.453 4 C -0.344 4.344 5 H 0.112 0.888 6 C -0.012 4.012 7 N -0.889 5.889 8 Si 0.991 3.009 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.258 1.258 12 C 0.449 3.551 13 O -0.642 6.642 14 C -0.090 4.090 15 H 0.088 0.912 16 C -0.099 4.099 17 C -0.131 4.131 18 C 0.092 3.908 19 H 0.076 0.924 20 O -0.406 6.406 21 C 0.023 3.977 22 C -0.108 4.108 23 H 0.002 0.998 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.022 0.978 27 H 0.085 0.915 28 H 0.267 0.733 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 8.707 -3.523 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.020 3.980 3 N -0.170 5.170 4 C -0.471 4.471 5 H 0.130 0.870 6 C -0.213 4.213 7 N -0.529 5.529 8 Si 0.816 3.184 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.182 1.182 12 C 0.239 3.761 13 O -0.532 6.532 14 C -0.111 4.111 15 H 0.106 0.894 16 C -0.138 4.138 17 C -0.169 4.169 18 C 0.034 3.966 19 H 0.094 0.906 20 O -0.325 6.325 21 C -0.073 4.073 22 C -0.146 4.146 23 H 0.021 0.979 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.041 0.959 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.628 8.386 -3.775 11.949 hybrid contribution -0.174 -0.239 0.646 0.710 sum 7.455 8.147 -3.129 11.477 Atomic orbital electron populations 1.21985 0.96227 1.00887 0.98768 1.21086 0.95083 0.83347 0.98498 1.44030 1.55969 1.11656 1.05371 1.20141 1.29869 1.12275 0.84840 0.87025 1.26159 0.95077 0.97308 1.02708 1.70338 1.30934 1.22884 1.28713 0.84937 0.79059 0.77590 0.76860 1.20459 1.20943 1.18242 1.20747 0.83264 0.89010 0.83049 1.90453 1.60131 1.69845 1.32781 1.21757 0.97930 0.93069 0.98381 0.89354 1.22311 0.91949 0.97961 1.01530 1.22847 1.00042 0.97330 0.96665 1.22760 0.94895 0.81311 0.97627 0.90597 1.87925 1.50706 1.22751 1.71145 1.22980 0.92376 0.98295 0.93642 1.22090 0.97941 0.98410 0.96160 0.97929 0.93267 0.90296 0.95945 0.89644 0.92269 0.90319 0.92348 0.89117 0.90071 0.88498 0.92882 0.93425 0.91149 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 9.37 71.98 0.67 -5.30 16 2 C 0.14 7.37 5.32 86.38 0.46 7.83 16 3 N -0.45 -23.44 2.62 -635.52 -1.67 -25.10 16 4 C -0.34 -17.04 8.94 84.04 0.75 -16.29 16 5 H 0.11 5.11 5.15 -2.91 -0.01 5.10 16 6 C -0.01 -0.58 5.34 84.93 0.45 -0.13 16 7 N -0.89 -44.85 7.29 21.66 0.16 -44.69 16 8 Si 0.99 38.59 29.55 68.60 2.03 40.61 16 9 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 12 C 0.45 22.49 6.89 87.66 0.60 23.10 16 13 O -0.64 -35.58 15.04 -3.07 -0.05 -35.63 16 14 C -0.09 -3.62 2.25 -10.46 -0.02 -3.65 16 15 H 0.09 3.61 7.31 -2.39 -0.02 3.59 16 16 C -0.10 -3.33 5.97 31.94 0.19 -3.14 16 17 C -0.13 -3.46 6.56 31.72 0.21 -3.25 16 18 C 0.09 2.62 3.39 31.32 0.11 2.73 16 19 H 0.08 1.93 7.81 -2.38 -0.02 1.91 16 20 O -0.41 -11.30 10.26 -148.98 -1.53 -12.83 16 21 C 0.02 0.43 10.85 113.37 1.23 1.66 16 22 C -0.11 -3.93 6.07 31.32 0.19 -3.74 16 23 H 0.00 0.08 8.14 -2.39 -0.02 0.07 16 24 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.08 4.17 5.86 -2.39 -0.01 4.16 16 26 H 0.02 1.16 7.48 -2.39 -0.02 1.14 16 27 H 0.09 4.52 6.27 -2.39 -0.01 4.50 16 28 H 0.27 12.80 8.31 -92.70 -0.77 12.03 16 29 H 0.08 2.62 6.98 -2.39 -0.02 2.61 16 30 H 0.06 2.03 8.05 -2.39 -0.02 2.01 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 33 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 36 H 0.07 2.84 6.75 -2.39 -0.02 2.82 16 37 H 0.07 2.44 7.96 -2.38 -0.02 2.42 16 Total: -1.00 -60.35 291.84 4.83 -55.52 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.05 Total: 22.30 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 4.84 Total: -0.18 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -1.51 Total: -69.80 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -1.57 Total: -48.45 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.61 kcal Total: -60.35 4.83 -55.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.279 kcal (2) G-P(sol) polarization free energy of solvation -60.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds