Wall clock time and date at job start Mon Mar 30 2020 03:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46779 * 2 1 4 4 C 1.37099 * 119.99982 * 91.02632 * 3 2 1 5 5 H 1.08004 * 120.00003 * 319.87711 * 4 3 2 6 6 C 1.38954 * 120.00289 * 139.88257 * 4 3 2 7 7 N 1.31403 * 120.00425 * 157.93600 * 6 4 3 8 8 Si 1.86803 * 119.99488 * 337.93816 * 6 4 3 9 9 H 1.48503 * 109.47306 * 95.34037 * 8 6 4 10 10 H 1.48500 * 109.47179 * 215.33946 * 8 6 4 11 11 H 1.48502 * 109.47481 * 335.34060 * 8 6 4 12 12 C 1.34771 * 119.99983 * 270.74997 * 3 2 1 13 13 O 1.21293 * 120.00020 * 174.43265 * 12 3 2 14 14 C 1.50697 * 120.00207 * 354.42915 * 12 3 2 15 15 H 1.08996 * 110.67182 * 32.84037 * 14 12 3 16 16 C 1.54884 * 110.75981 * 269.40177 * 14 12 3 17 17 C 1.54271 * 104.20069 * 203.74232 * 16 14 12 18 18 C 1.53870 * 106.59433 * 23.60763 * 17 16 14 19 19 H 1.09004 * 110.03071 * 240.71557 * 18 17 16 20 20 O 1.42896 * 110.07294 * 119.31107 * 18 17 16 21 21 C 1.42902 * 114.00430 * 92.80458 * 20 18 17 22 22 C 1.54268 * 106.60192 * 0.02562 * 18 17 16 23 23 H 1.09005 * 109.47237 * 302.94329 * 1 2 3 24 24 H 1.08997 * 109.47566 * 62.94727 * 1 2 3 25 25 H 1.09002 * 109.47204 * 182.95195 * 1 2 3 26 26 H 1.08996 * 109.47226 * 240.00603 * 2 1 3 27 27 H 1.08998 * 109.47196 * 119.99550 * 2 1 3 28 28 H 0.96995 * 120.00328 * 179.97438 * 7 6 4 29 29 H 1.09006 * 110.48634 * 322.42265 * 16 14 12 30 30 H 1.08998 * 110.48935 * 85.06197 * 16 14 12 31 31 H 1.09005 * 110.02817 * 264.32456 * 17 16 14 32 32 H 1.08994 * 110.03328 * 142.89700 * 17 16 14 33 33 H 1.09005 * 109.46996 * 59.99898 * 21 20 18 34 34 H 1.08998 * 109.47250 * 180.02562 * 21 20 18 35 35 H 1.09004 * 109.46890 * 300.00747 * 21 20 18 36 36 H 1.09001 * 110.48778 * 217.71497 * 22 18 17 37 37 H 1.08998 * 110.48702 * 95.06968 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2668 2.0205 1.1871 5 1 1.5961 1.8870 2.0231 6 6 3.3815 2.8402 1.3148 7 7 3.4099 3.7710 2.2419 8 14 4.8397 2.6188 0.1685 9 1 4.7230 3.5657 -0.9695 10 1 6.0977 2.8888 0.9100 11 1 4.8578 1.2260 -0.3464 12 6 2.2284 2.0217 -1.1671 13 8 2.5352 3.1952 -1.1682 14 6 2.0825 1.2798 -2.4706 15 1 1.3083 0.5164 -2.3943 16 6 3.4332 0.6563 -2.9017 17 6 3.3049 0.4952 -4.4306 18 6 2.2498 1.5153 -4.8929 19 1 1.4110 0.9992 -5.3602 20 8 2.8314 2.4385 -5.8156 21 6 2.6870 2.0596 -7.1859 22 6 1.7742 2.2611 -3.6290 23 1 -0.3634 0.5589 0.8625 24 1 -0.3634 0.4674 -0.9152 25 1 -0.3634 -1.0263 0.0529 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 4.1882 4.3429 2.3313 29 1 4.2579 1.3256 -2.6564 30 1 3.5743 -0.3144 -2.4263 31 1 2.9782 -0.5160 -4.6733 32 1 4.2614 0.7041 -4.9096 33 1 1.6279 1.9829 -7.4321 34 1 3.1548 2.8110 -7.8219 35 1 3.1685 1.0953 -7.3489 36 1 0.7041 2.4613 -3.6841 37 1 2.3309 3.1895 -3.5017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:08 Heat of formation + Delta-G solvation = -77.034396 kcal Electronic energy + Delta-G solvation = -18561.421846 eV Core-core repulsion = 15725.141463 eV Total energy + Delta-G solvation = -2836.280382 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.62302 -38.14900 -35.50737 -34.75532 -32.22410 -29.61932 -28.71688 -28.45884 -26.16351 -24.58423 -22.72756 -20.96956 -20.28080 -18.81299 -17.42806 -16.47714 -15.93157 -15.59677 -15.14218 -14.82122 -14.11288 -13.99974 -13.60272 -13.16682 -12.91755 -12.63525 -12.31169 -12.24775 -11.96030 -11.70410 -11.40388 -11.30053 -11.12134 -10.88696 -10.72388 -10.50884 -10.40828 -10.28903 -10.01059 -9.79093 -9.50676 -8.52706 -8.34698 -7.53251 -6.16207 -3.85863 3.33993 3.48033 3.67749 3.75744 3.93028 4.51887 4.59453 4.78263 4.83770 5.06400 5.24943 5.27518 5.29858 5.41404 5.55766 5.57017 5.61958 5.68500 5.74044 5.83515 5.87374 5.98813 6.04583 6.11550 6.13316 6.29473 6.30610 6.47114 6.49374 6.68510 6.76296 7.33657 7.91301 8.04887 8.86169 9.03120 9.50561 9.93263 10.90558 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.008734 C = 0.007474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.786171 B = 3205.256247 C = 3745.394866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.463 5.463 4 C -0.350 4.350 5 H 0.092 0.908 6 C 0.094 3.906 7 N -0.864 5.864 8 Si 0.896 3.104 9 H -0.254 1.254 10 H -0.306 1.306 11 H -0.275 1.275 12 C 0.456 3.544 13 O -0.544 6.544 14 C -0.111 4.111 15 H 0.089 0.911 16 C -0.110 4.110 17 C -0.143 4.143 18 C 0.084 3.916 19 H 0.062 0.938 20 O -0.381 6.381 21 C 0.030 3.970 22 C -0.104 4.104 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.271 0.729 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.712 -9.789 -14.237 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.027 4.027 3 N -0.185 5.185 4 C -0.476 4.476 5 H 0.110 0.890 6 C -0.115 4.115 7 N -0.498 5.498 8 Si 0.726 3.274 9 H -0.180 1.180 10 H -0.235 1.235 11 H -0.200 1.200 12 C 0.245 3.755 13 O -0.426 6.426 14 C -0.133 4.133 15 H 0.107 0.893 16 C -0.148 4.148 17 C -0.181 4.181 18 C 0.027 3.973 19 H 0.080 0.920 20 O -0.300 6.300 21 C -0.066 4.066 22 C -0.142 4.142 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.395 -8.884 -14.049 16.794 hybrid contribution 0.579 -0.460 -0.552 0.923 sum -1.816 -9.344 -14.602 17.430 Atomic orbital electron populations 1.22159 0.97092 1.00667 1.02324 1.21563 0.93848 0.85763 1.01482 1.43690 1.59367 1.10097 1.05346 1.18750 1.10084 1.28559 0.90196 0.89041 1.25217 0.98007 0.93244 0.95033 1.69779 1.29715 1.15806 1.34534 0.86648 0.79751 0.79197 0.81838 1.17952 1.23469 1.20007 1.20036 0.83214 0.87511 0.84725 1.90544 1.49870 1.15921 1.86274 1.22214 0.98455 0.98212 0.94392 0.89279 1.22280 0.97244 1.00832 0.94439 1.22668 1.00077 0.98670 0.96699 1.22888 0.94122 0.89958 0.90361 0.91992 1.88013 1.79016 1.47960 1.14983 1.22750 1.00074 1.00295 0.83514 1.22306 1.01319 1.00021 0.90512 0.92010 0.93215 0.92861 0.92426 0.90782 0.91909 0.91088 0.91233 0.91480 0.90812 0.94281 0.89967 0.94364 0.91170 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 10.13 37.16 0.38 -2.21 16 2 C 0.10 1.79 5.72 -4.04 -0.02 1.77 16 3 N -0.46 -11.23 2.20 -114.81 -0.25 -11.48 16 4 C -0.35 -10.05 9.68 -14.93 -0.14 -10.20 16 5 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 6 C 0.09 2.84 4.77 -17.47 -0.08 2.75 16 7 N -0.86 -27.04 13.96 55.50 0.77 -26.26 16 8 Si 0.90 24.40 24.27 -169.99 -4.13 20.27 16 9 H -0.25 -7.31 6.40 56.52 0.36 -6.95 16 10 H -0.31 -8.17 7.11 56.52 0.40 -7.76 16 11 H -0.27 -7.00 7.07 56.52 0.40 -6.60 16 12 C 0.46 11.03 4.85 -10.99 -0.05 10.97 16 13 O -0.54 -15.61 11.72 5.55 0.07 -15.54 16 14 C -0.11 -2.03 2.31 -89.77 -0.21 -2.24 16 15 H 0.09 1.39 6.02 -51.93 -0.31 1.07 16 16 C -0.11 -1.86 6.18 -25.07 -0.15 -2.01 16 17 C -0.14 -1.95 6.61 -25.61 -0.17 -2.11 16 18 C 0.08 1.20 3.38 -25.61 -0.09 1.11 16 19 H 0.06 0.73 7.80 -51.93 -0.41 0.32 16 20 O -0.38 -5.73 10.26 -35.23 -0.36 -6.09 16 21 C 0.03 0.32 10.85 101.05 1.10 1.41 16 22 C -0.10 -1.80 5.85 -25.06 -0.15 -1.95 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.05 0.76 7.61 -51.93 -0.40 0.37 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.91 5.95 -51.93 -0.31 0.60 16 27 H 0.07 1.33 8.03 -51.93 -0.42 0.92 16 28 H 0.27 8.01 8.31 -40.82 -0.34 7.67 16 29 H 0.07 1.41 7.33 -51.93 -0.38 1.03 16 30 H 0.07 1.06 7.78 -51.93 -0.40 0.65 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.00 7.96 -51.93 -0.41 0.58 16 33 H 0.04 0.35 8.10 -51.93 -0.42 -0.07 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.10 2.01 7.17 -51.93 -0.37 1.64 16 LS Contribution 292.29 15.07 4.40 4.40 Total: -1.00 -34.43 292.29 -5.06 -39.49 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.97 Total: -2.09 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 0.40 Total: -2.70 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.52 Total: -37.74 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.30 Total: -21.63 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -4.13 Total: 20.27 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.43 -5.06 -39.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.545 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds