Wall clock time and date at job start Mon Mar 30 2020 03:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46779 * 2 1 4 4 C 1.37099 * 119.99982 * 91.02632 * 3 2 1 5 5 H 1.08004 * 120.00003 * 319.87711 * 4 3 2 6 6 C 1.38954 * 120.00289 * 139.88257 * 4 3 2 7 7 N 1.31403 * 120.00425 * 157.93600 * 6 4 3 8 8 Si 1.86803 * 119.99488 * 337.93816 * 6 4 3 9 9 H 1.48503 * 109.47306 * 95.34037 * 8 6 4 10 10 H 1.48500 * 109.47179 * 215.33946 * 8 6 4 11 11 H 1.48502 * 109.47481 * 335.34060 * 8 6 4 12 12 C 1.34771 * 119.99983 * 270.74997 * 3 2 1 13 13 O 1.21293 * 120.00020 * 174.43265 * 12 3 2 14 14 C 1.50697 * 120.00207 * 354.42915 * 12 3 2 15 15 H 1.08996 * 110.67182 * 32.84037 * 14 12 3 16 16 C 1.54884 * 110.75981 * 269.40177 * 14 12 3 17 17 C 1.54271 * 104.20069 * 203.74232 * 16 14 12 18 18 C 1.53870 * 106.59433 * 23.60763 * 17 16 14 19 19 H 1.09004 * 110.03071 * 240.71557 * 18 17 16 20 20 O 1.42896 * 110.07294 * 119.31107 * 18 17 16 21 21 C 1.42902 * 114.00430 * 92.80458 * 20 18 17 22 22 C 1.54268 * 106.60192 * 0.02562 * 18 17 16 23 23 H 1.09005 * 109.47237 * 302.94329 * 1 2 3 24 24 H 1.08997 * 109.47566 * 62.94727 * 1 2 3 25 25 H 1.09002 * 109.47204 * 182.95195 * 1 2 3 26 26 H 1.08996 * 109.47226 * 240.00603 * 2 1 3 27 27 H 1.08998 * 109.47196 * 119.99550 * 2 1 3 28 28 H 0.96995 * 120.00328 * 179.97438 * 7 6 4 29 29 H 1.09006 * 110.48634 * 322.42265 * 16 14 12 30 30 H 1.08998 * 110.48935 * 85.06197 * 16 14 12 31 31 H 1.09005 * 110.02817 * 264.32456 * 17 16 14 32 32 H 1.08994 * 110.03328 * 142.89700 * 17 16 14 33 33 H 1.09005 * 109.46996 * 59.99898 * 21 20 18 34 34 H 1.08998 * 109.47250 * 180.02562 * 21 20 18 35 35 H 1.09004 * 109.46890 * 300.00747 * 21 20 18 36 36 H 1.09001 * 110.48778 * 217.71497 * 22 18 17 37 37 H 1.08998 * 110.48702 * 95.06968 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2668 2.0205 1.1871 5 1 1.5961 1.8870 2.0231 6 6 3.3815 2.8402 1.3148 7 7 3.4099 3.7710 2.2419 8 14 4.8397 2.6188 0.1685 9 1 4.7230 3.5657 -0.9695 10 1 6.0977 2.8888 0.9100 11 1 4.8578 1.2260 -0.3464 12 6 2.2284 2.0217 -1.1671 13 8 2.5352 3.1952 -1.1682 14 6 2.0825 1.2798 -2.4706 15 1 1.3083 0.5164 -2.3943 16 6 3.4332 0.6563 -2.9017 17 6 3.3049 0.4952 -4.4306 18 6 2.2498 1.5153 -4.8929 19 1 1.4110 0.9992 -5.3602 20 8 2.8314 2.4385 -5.8156 21 6 2.6870 2.0596 -7.1859 22 6 1.7742 2.2611 -3.6290 23 1 -0.3634 0.5589 0.8625 24 1 -0.3634 0.4674 -0.9152 25 1 -0.3634 -1.0263 0.0529 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 4.1882 4.3429 2.3313 29 1 4.2579 1.3256 -2.6564 30 1 3.5743 -0.3144 -2.4263 31 1 2.9782 -0.5160 -4.6733 32 1 4.2614 0.7041 -4.9096 33 1 1.6279 1.9829 -7.4321 34 1 3.1548 2.8110 -7.8219 35 1 3.1685 1.0953 -7.3489 36 1 0.7041 2.4613 -3.6841 37 1 2.3309 3.1895 -3.5017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:08 Heat of formation + Delta-G solvation = -101.976234 kcal Electronic energy + Delta-G solvation = -18562.503405 eV Core-core repulsion = 15725.141463 eV Total energy + Delta-G solvation = -2837.361942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24509 -39.46932 -36.89711 -36.51619 -34.38010 -31.26036 -30.05078 -29.65199 -27.17927 -26.44125 -24.24968 -22.56233 -21.41048 -20.61554 -19.09935 -17.92531 -17.52635 -17.09963 -16.74220 -15.93589 -15.79643 -15.45772 -15.09885 -14.72491 -14.49146 -14.34095 -14.14600 -13.88374 -13.09923 -13.08708 -12.70653 -12.68399 -12.56611 -12.38372 -12.27933 -12.08934 -11.91046 -11.83683 -11.62331 -11.35935 -10.79782 -10.49050 -10.30793 -9.56899 -8.46433 -6.13849 1.16714 1.29521 1.44415 1.94105 2.40139 2.62408 2.98083 3.12093 3.52752 3.60766 3.93271 4.12109 4.24829 4.36064 4.41758 4.45329 4.48069 4.54437 4.56639 4.63015 4.71536 4.75143 4.85220 4.91601 5.00868 5.06198 5.11298 5.14549 5.21231 5.30899 5.46449 5.70969 5.86141 6.39702 6.78382 6.95473 7.37860 7.94846 8.63899 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.008734 C = 0.007474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.786171 B = 3205.256247 C = 3745.394866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.089 3.911 3 N -0.477 5.477 4 C -0.344 4.344 5 H 0.067 0.933 6 C 0.044 3.956 7 N -0.909 5.909 8 Si 0.946 3.054 9 H -0.287 1.287 10 H -0.301 1.301 11 H -0.246 1.246 12 C 0.450 3.550 13 O -0.600 6.600 14 C -0.103 4.103 15 H 0.130 0.870 16 C -0.114 4.114 17 C -0.133 4.133 18 C 0.089 3.911 19 H 0.100 0.900 20 O -0.417 6.417 21 C 0.024 3.976 22 C -0.109 4.109 23 H 0.032 0.968 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.271 0.729 29 H 0.030 0.970 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 -13.398 -17.079 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.033 4.033 3 N -0.199 5.199 4 C -0.471 4.471 5 H 0.085 0.915 6 C -0.160 4.160 7 N -0.547 5.547 8 Si 0.775 3.225 9 H -0.214 1.214 10 H -0.230 1.230 11 H -0.169 1.169 12 C 0.241 3.759 13 O -0.485 6.485 14 C -0.125 4.125 15 H 0.148 0.852 16 C -0.152 4.152 17 C -0.171 4.171 18 C 0.032 3.968 19 H 0.118 0.882 20 O -0.336 6.336 21 C -0.072 4.072 22 C -0.147 4.147 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.199 -12.560 -16.897 21.295 hybrid contribution 0.704 0.690 0.293 1.028 sum -2.495 -11.870 -16.604 20.562 Atomic orbital electron populations 1.22105 0.94968 1.03079 1.01376 1.21907 0.95517 0.82369 1.03512 1.43963 1.59481 1.12547 1.03935 1.18719 1.08836 1.28349 0.91230 0.91529 1.25879 1.00428 0.93460 0.96268 1.69867 1.30557 1.17460 1.36819 0.85835 0.77705 0.79795 0.79178 1.21430 1.22995 1.16943 1.21186 0.80882 0.87225 0.86627 1.90519 1.51803 1.18789 1.87370 1.22263 1.00806 0.98657 0.90733 0.85195 1.22346 0.94606 1.00763 0.97483 1.22662 1.00080 1.00721 0.93589 1.22886 0.95520 0.89375 0.89048 0.88235 1.87977 1.79404 1.49098 1.17149 1.22984 1.01523 1.01456 0.81268 1.22317 1.01547 0.98329 0.92510 0.94862 0.92549 0.88488 0.88511 0.90654 0.91985 0.95123 0.88750 0.87192 0.91035 0.92668 0.89298 0.92584 0.89977 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 10.13 71.98 0.73 -3.69 16 2 C 0.09 2.98 5.72 86.38 0.49 3.48 16 3 N -0.48 -22.78 2.20 -635.54 -1.40 -24.18 16 4 C -0.34 -20.22 9.68 84.04 0.81 -19.41 16 5 H 0.07 4.14 8.06 -2.91 -0.02 4.12 16 6 C 0.04 2.72 4.77 84.93 0.41 3.13 16 7 N -0.91 -59.49 13.96 21.66 0.30 -59.18 16 8 Si 0.95 52.02 24.27 68.60 1.66 53.69 16 9 H -0.29 -17.22 6.40 99.48 0.64 -16.58 16 10 H -0.30 -16.04 7.11 99.48 0.71 -15.33 16 11 H -0.25 -12.08 7.07 99.48 0.70 -11.38 16 12 C 0.45 21.55 4.85 87.66 0.43 21.97 16 13 O -0.60 -35.56 11.72 -3.07 -0.04 -35.60 16 14 C -0.10 -3.48 2.31 -10.24 -0.02 -3.51 16 15 H 0.13 3.32 6.02 -2.39 -0.01 3.31 16 16 C -0.11 -3.46 6.18 31.67 0.20 -3.26 16 17 C -0.13 -2.98 6.61 31.32 0.21 -2.78 16 18 C 0.09 2.19 3.38 31.32 0.11 2.30 16 19 H 0.10 1.73 7.80 -2.39 -0.02 1.71 16 20 O -0.42 -11.58 10.26 -148.98 -1.53 -13.11 16 21 C 0.02 0.41 10.85 113.37 1.23 1.64 16 22 C -0.11 -3.61 5.85 31.68 0.19 -3.43 16 23 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.06 1.50 7.61 -2.39 -0.02 1.49 16 25 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.10 2.50 5.95 -2.39 -0.01 2.49 16 27 H 0.07 2.51 8.03 -2.39 -0.02 2.49 16 28 H 0.27 16.79 8.31 -92.71 -0.77 16.02 16 29 H 0.03 1.17 7.33 -2.38 -0.02 1.15 16 30 H 0.09 2.37 7.78 -2.39 -0.02 2.35 16 31 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.07 1.67 7.96 -2.39 -0.02 1.65 16 33 H 0.05 0.78 8.10 -2.38 -0.02 0.76 16 34 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.05 2.08 7.17 -2.39 -0.02 2.06 16 Total: -1.00 -81.27 292.29 4.73 -76.54 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 0.96 Total: 5.40 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 4.77 Total: -3.55 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -1.10 Total: -83.36 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -1.56 Total: -48.71 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 1.66 Total: 53.69 kcal Total: -81.27 4.73 -76.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.436 kcal (2) G-P(sol) polarization free energy of solvation -81.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds