Wall clock time and date at job start Mon Mar 30 2020 03:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47234 * 2 1 4 4 C 1.42902 * 114.00097 * 185.23212 * 3 2 1 5 5 C 1.50707 * 112.84446 * 294.55118 * 4 3 2 6 6 O 1.21278 * 120.00106 * 348.96276 * 5 4 3 7 7 N 1.34778 * 119.99342 * 168.95969 * 5 4 3 8 8 C 1.46502 * 119.99470 * 185.17722 * 7 5 4 9 9 H 1.09002 * 109.47222 * 35.00766 * 8 7 5 10 10 C 1.52996 * 109.47318 * 275.00280 * 8 7 5 11 11 C 1.50698 * 109.46892 * 155.00170 * 8 7 5 12 12 H 1.08002 * 119.99803 * 94.96630 * 11 8 7 13 13 C 1.37883 * 120.00457 * 274.96739 * 11 8 7 14 14 N 1.31514 * 119.99639 * 355.74983 * 13 11 8 15 15 Si 1.86800 * 120.00136 * 175.74882 * 13 11 8 16 16 H 1.48500 * 109.46968 * 89.99929 * 15 13 11 17 17 H 1.48497 * 109.46944 * 209.99970 * 15 13 11 18 18 H 1.48499 * 109.46955 * 329.99747 * 15 13 11 19 19 C 1.53772 * 113.69211 * 65.81843 * 4 3 2 20 20 C 1.53789 * 87.07871 * 89.12939 * 19 4 3 21 21 C 1.53775 * 113.61351 * 163.35996 * 4 3 2 22 22 H 1.08997 * 109.46967 * 60.00399 * 1 2 3 23 23 H 1.09001 * 109.46645 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.47128 * 300.00107 * 1 2 3 25 25 H 1.08998 * 109.47459 * 239.99883 * 2 1 3 26 26 H 1.08997 * 109.46967 * 119.99601 * 2 1 3 27 27 H 0.96996 * 120.00352 * 5.18476 * 7 5 4 28 28 H 1.08996 * 109.47471 * 295.15710 * 10 8 7 29 29 H 1.08996 * 109.47014 * 55.16015 * 10 8 7 30 30 H 1.09006 * 109.47225 * 175.15668 * 10 8 7 31 31 H 0.97002 * 119.99717 * 5.41317 * 14 13 11 32 32 H 1.09005 * 113.61688 * 203.67590 * 19 4 3 33 33 H 1.08997 * 113.61818 * 334.58584 * 19 4 3 34 34 H 1.08996 * 113.61382 * 270.88378 * 20 19 4 35 35 H 1.09004 * 113.68866 * 139.99442 * 20 19 4 36 36 H 1.09005 * 113.61826 * 25.34310 * 21 4 3 37 37 H 1.09007 * 113.61546 * 156.16428 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4258 1.4619 -0.1190 5 6 4.1602 0.8955 1.0688 6 8 3.5493 0.5943 2.0723 7 7 5.4959 0.7237 1.0159 8 6 6.1947 0.0691 2.1247 9 1 5.5589 -0.7098 2.5457 10 6 6.5179 1.1030 3.2052 11 6 7.4742 -0.5458 1.6191 12 1 8.4028 0.0005 1.6950 13 6 7.4595 -1.8058 1.0594 14 7 6.3457 -2.5048 1.0424 15 14 9.0217 -2.5200 0.3252 16 1 9.7654 -3.2648 1.3728 17 1 8.6704 -3.4433 -0.7835 18 1 9.8711 -1.4197 -0.1973 19 6 3.9737 0.9759 -1.4711 20 6 3.7617 2.4103 -1.9836 21 6 3.8985 2.8686 -0.5221 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 5.9946 1.0334 0.2437 28 1 7.2222 1.8345 2.8091 29 1 5.6017 1.6087 3.5098 30 1 6.9601 0.6023 4.0666 31 1 5.5176 -2.1052 1.3516 32 1 5.0209 0.6753 -1.4354 33 1 3.3373 0.2388 -1.9607 34 1 2.7708 2.5817 -2.4040 35 1 4.5633 2.7673 -2.6301 36 1 3.2013 3.6596 -0.2455 37 1 4.9247 3.0861 -0.2255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596994898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:58 Heat of formation + Delta-G solvation = -76.516354 kcal Electronic energy + Delta-G solvation = -18472.291249 eV Core-core repulsion = 15636.033331 eV Total energy + Delta-G solvation = -2836.257918 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30458 -37.55885 -35.88710 -34.77199 -32.08052 -30.73512 -29.53371 -25.81204 -25.59888 -24.69759 -22.50253 -21.46548 -20.30037 -18.89034 -17.93371 -16.54765 -16.09578 -15.10434 -14.82317 -14.54495 -14.29555 -13.89008 -13.67868 -13.44674 -13.00102 -12.41735 -12.26426 -12.15492 -11.84903 -11.37494 -11.30694 -11.21418 -11.06690 -10.99885 -10.89049 -10.64545 -10.38910 -10.25066 -10.00893 -9.73550 -9.04339 -8.51251 -8.37232 -7.83969 -6.57854 -4.38579 3.30899 3.33322 3.34560 3.50813 3.71646 4.15420 4.36414 4.61836 4.78561 4.97799 5.13763 5.26948 5.33805 5.46374 5.58493 5.68152 5.76417 5.86108 5.86994 5.97855 6.07348 6.15618 6.22179 6.28506 6.35544 6.37855 6.54170 6.60897 7.04383 7.22769 7.38467 7.67624 7.87768 8.22919 8.57739 8.77026 9.19269 9.41809 10.78499 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.007385 C = 0.007335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.576868 B = 3790.316848 C = 3816.535800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.345 6.345 4 C 0.071 3.929 5 C 0.486 3.514 6 O -0.555 6.555 7 N -0.699 5.699 8 C 0.236 3.764 9 H 0.051 0.949 10 C -0.140 4.140 11 C -0.607 4.607 12 H 0.057 0.943 13 C 0.030 3.970 14 N -0.890 5.890 15 Si 1.072 2.928 16 H -0.285 1.285 17 H -0.283 1.283 18 H -0.286 1.286 19 C -0.160 4.160 20 C -0.131 4.131 21 C -0.116 4.116 22 H 0.057 0.943 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.385 0.615 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.276 0.724 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 7.224 -6.685 11.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 O -0.263 6.263 4 C 0.027 3.973 5 C 0.270 3.730 6 O -0.435 6.435 7 N -0.350 5.350 8 C 0.136 3.864 9 H 0.069 0.931 10 C -0.198 4.198 11 C -0.646 4.646 12 H 0.075 0.925 13 C -0.178 4.178 14 N -0.523 5.523 15 Si 0.899 3.101 16 H -0.211 1.211 17 H -0.209 1.209 18 H -0.212 1.212 19 C -0.198 4.198 20 C -0.168 4.168 21 C -0.153 4.153 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.219 0.781 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.850 5.769 -6.620 10.032 hybrid contribution -0.278 1.229 0.348 1.307 sum -5.129 6.998 -6.272 10.706 Atomic orbital electron populations 1.21692 0.93946 1.01997 1.02537 1.22539 0.94920 0.83939 1.01240 1.87828 1.17568 1.26738 1.94194 1.22602 0.82908 0.98659 0.93090 1.20999 0.84083 0.79280 0.88609 1.90599 1.67835 1.51955 1.33117 1.47681 1.05702 1.58351 1.23282 1.18871 0.92646 0.90804 0.84063 0.93075 1.21987 0.99114 0.99377 0.99369 1.22148 0.93351 1.04197 1.44883 0.92483 1.26033 1.03580 0.93982 0.94251 1.70725 1.00591 1.38473 1.42542 0.83515 0.73977 0.75760 0.76847 1.21142 1.20907 1.21178 1.23559 1.02784 0.97747 0.95694 1.22793 1.02276 0.95773 0.96005 1.22950 1.01905 0.94430 0.96063 0.92394 0.91242 0.91925 0.93595 0.91658 0.78101 0.94171 0.94837 0.93125 0.91201 0.88284 0.90538 0.89766 0.90888 0.90103 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 10.28 37.16 0.38 -1.55 16 2 C 0.05 0.85 6.18 37.16 0.23 1.08 16 3 O -0.35 -6.32 9.97 -52.61 -0.52 -6.85 16 4 C 0.07 1.27 1.14 -90.96 -0.10 1.16 16 5 C 0.49 10.69 6.66 -10.98 -0.07 10.62 16 6 O -0.56 -14.27 14.96 -11.82 -0.18 -14.45 16 7 N -0.70 -15.40 4.76 -54.93 -0.26 -15.66 16 8 C 0.24 5.91 2.24 -69.08 -0.15 5.75 16 9 H 0.05 1.48 6.20 -51.93 -0.32 1.15 16 10 C -0.14 -3.13 9.46 37.16 0.35 -2.78 16 11 C -0.61 -15.93 8.50 -34.44 -0.29 -16.22 16 12 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 13 C 0.03 0.81 5.46 -17.82 -0.10 0.72 16 14 N -0.89 -25.76 13.62 55.43 0.76 -25.00 16 15 Si 1.07 23.54 29.91 -169.99 -5.08 18.45 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -5.91 7.11 56.52 0.40 -5.51 16 19 C -0.16 -2.44 7.03 -25.92 -0.18 -2.62 16 20 C -0.13 -1.63 8.02 -25.92 -0.21 -1.84 16 21 C -0.12 -1.65 7.42 -25.92 -0.19 -1.84 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.74 6.58 -51.93 -0.34 0.39 16 26 H 0.07 1.31 6.67 -51.93 -0.35 0.97 16 27 H 0.38 7.69 7.05 -40.82 -0.29 7.40 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.28 8.26 6.67 -40.82 -0.27 7.98 16 32 H 0.10 1.57 6.69 -51.93 -0.35 1.22 16 33 H 0.08 1.14 6.71 -51.93 -0.35 0.79 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.10 1.32 7.90 -51.93 -0.41 0.91 16 LS Contribution 302.41 15.07 4.56 4.56 Total: -1.00 -30.84 302.41 -6.76 -37.60 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.68 Total: 8.88 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -0.34 Total: -7.53 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.49 Total: -40.66 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.70 Total: -21.30 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.08 Total: 18.45 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.84 -6.76 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596994898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.918 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds