Wall clock time and date at job start Mon Mar 30 2020 03:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99947 * 2 1 4 4 H 1.08996 * 110.43430 * 27.46319 * 3 2 1 5 5 C 1.54268 * 110.60183 * 264.84171 * 3 2 1 6 6 C 1.53876 * 106.59992 * 217.65838 * 5 3 2 7 7 C 1.54268 * 106.59607 * 0.02562 * 6 5 3 8 8 H 1.09003 * 110.48471 * 264.93239 * 7 6 5 9 9 C 1.50703 * 110.48320 * 142.28923 * 7 6 5 10 10 O 1.21277 * 120.00044 * 245.21915 * 9 7 6 11 11 N 1.34771 * 119.99802 * 65.22391 * 9 7 6 12 12 C 1.46507 * 119.99780 * 179.97438 * 11 9 7 13 13 H 1.08996 * 109.46801 * 35.00527 * 12 11 9 14 14 C 1.52994 * 109.47037 * 274.99815 * 12 11 9 15 15 C 1.50703 * 109.46750 * 154.99829 * 12 11 9 16 16 H 1.07990 * 120.00415 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99685 * 180.02562 * 15 12 11 18 18 N 1.31521 * 120.00033 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 120.00073 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47295 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47417 * 119.99960 * 19 17 15 22 22 H 1.48502 * 109.47109 * 239.99933 * 19 17 15 23 23 C 1.54882 * 104.19992 * 23.60931 * 7 6 5 24 24 H 1.08996 * 109.47362 * 59.99576 * 1 2 3 25 25 H 1.09000 * 109.47494 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47098 * 299.99668 * 1 2 3 27 27 H 1.08998 * 110.02839 * 336.94848 * 5 3 2 28 28 H 1.09002 * 110.02428 * 98.37176 * 5 3 2 29 29 H 1.08994 * 110.02975 * 119.28475 * 6 5 3 30 30 H 1.09000 * 110.03018 * 240.67159 * 6 5 3 31 31 H 0.97002 * 120.00731 * 359.97438 * 11 9 7 32 32 H 1.08995 * 109.47447 * 299.99417 * 14 12 11 33 33 H 1.09004 * 109.47139 * 60.00505 * 14 12 11 34 34 H 1.09004 * 109.46779 * 180.02562 * 14 12 11 35 35 H 0.96995 * 119.99615 * 179.97438 * 18 17 15 36 36 H 1.08994 * 110.76048 * 203.74464 * 23 7 6 37 37 H 1.09004 * 110.75771 * 80.36858 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3370 2.0217 0.4710 5 6 2.3496 1.7486 -1.4382 6 6 3.6767 2.5232 -1.3579 7 6 4.0978 2.5232 0.1262 8 1 3.7618 3.4361 0.6181 9 6 5.5924 2.3751 0.2503 10 8 6.0627 1.3833 0.7661 11 7 6.4063 3.3448 -0.2118 12 6 7.8592 3.2010 -0.0906 13 1 8.1320 2.1529 -0.2132 14 6 8.3064 3.6866 1.2896 15 6 8.5360 4.0241 -1.1563 16 1 7.9433 4.5972 -1.8538 17 6 9.9120 4.0454 -1.2409 18 7 10.6340 3.3478 -0.3912 19 14 10.7510 5.0661 -2.5613 20 1 9.7230 5.7528 -3.3839 21 1 11.6302 6.0774 -1.9213 22 1 11.5669 4.1790 -3.4289 23 6 3.3791 1.2888 0.7251 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.4650 0.8755 -2.0804 28 1 1.5623 2.3956 -1.8250 29 1 4.4362 2.0260 -1.9611 30 1 3.5337 3.5460 -1.7066 31 1 6.0302 4.1379 -0.6247 32 1 8.0336 4.7347 1.4120 33 1 7.8169 3.0912 2.0604 34 1 9.3875 3.5800 1.3795 35 1 11.6020 3.3625 -0.4510 36 1 3.2475 1.4027 1.8010 37 1 3.9266 0.3744 0.4964 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596998510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:11 Heat of formation + Delta-G solvation = -103.608338 kcal Electronic energy + Delta-G solvation = -17581.223014 eV Core-core repulsion = 14743.790299 eV Total energy + Delta-G solvation = -2837.432715 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.65089 -38.17329 -35.72307 -34.66779 -32.33362 -29.56231 -28.74342 -27.90440 -26.10658 -25.23454 -22.32635 -20.55370 -20.27651 -19.14908 -17.51389 -16.51753 -15.97047 -15.64018 -15.17637 -14.93241 -14.52698 -14.13597 -13.71842 -13.19902 -13.10824 -12.43902 -12.31877 -11.83628 -11.65264 -11.57148 -11.44924 -11.10144 -11.02653 -10.93882 -10.71915 -10.61675 -10.44147 -10.26046 -10.22279 -9.62078 -9.01792 -8.89956 -8.53239 -7.86140 -6.10813 -4.19962 3.24301 3.31988 3.34604 3.44188 3.63390 4.17097 4.39374 4.58266 4.67542 4.90500 5.11741 5.17428 5.21485 5.26908 5.44548 5.46410 5.51531 5.59787 5.61673 5.83235 5.92128 6.02853 6.15966 6.29215 6.45414 6.85129 6.99425 7.17204 7.18399 7.50559 7.59756 7.72221 7.94461 8.17485 8.71704 8.81135 9.18727 9.47993 10.95243 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.048100 B = 0.004725 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.980102 B = 5924.094060 C = 6271.536965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.081 3.919 4 H 0.066 0.934 5 C -0.143 4.143 6 C -0.111 4.111 7 C -0.115 4.115 8 H 0.095 0.905 9 C 0.508 3.492 10 O -0.554 6.554 11 N -0.709 5.709 12 C 0.263 3.737 13 H 0.048 0.952 14 C -0.147 4.147 15 C -0.532 4.532 16 H 0.061 0.939 17 C 0.065 3.935 18 N -0.883 5.883 19 Si 0.901 3.099 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.098 4.098 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.388 0.612 32 H 0.026 0.974 33 H 0.014 0.986 34 H 0.090 0.910 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.693 -0.177 -0.599 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.023 3.977 4 H 0.084 0.916 5 C -0.181 4.181 6 C -0.149 4.149 7 C -0.137 4.137 8 H 0.113 0.887 9 C 0.293 3.707 10 O -0.433 6.433 11 N -0.356 5.356 12 C 0.161 3.839 13 H 0.066 0.934 14 C -0.205 4.205 15 C -0.571 4.571 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.136 4.136 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.220 0.780 32 H 0.045 0.955 33 H 0.033 0.967 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.005 -1.089 -0.193 17.041 hybrid contribution 0.116 1.274 -0.904 1.567 sum -16.888 0.185 -1.097 16.925 Atomic orbital electron populations 1.22762 0.81618 1.02517 0.99711 1.87962 1.19172 1.27833 1.94906 1.23114 0.95002 0.84147 0.95456 0.91562 1.22615 0.97382 1.00577 0.97558 1.22019 0.96976 1.00864 0.95014 1.22105 0.93869 1.00084 0.97661 0.88678 1.20231 0.87975 0.83654 0.78880 1.90650 1.77265 1.30422 1.44917 1.46513 1.09389 1.20627 1.59059 1.18741 0.73365 0.98241 0.93571 0.93414 1.22073 1.04078 0.97546 0.96839 1.21264 0.91712 1.29344 1.14751 0.92052 1.24900 0.97221 0.95516 0.96144 1.69919 1.05967 1.40360 1.35864 0.86398 0.79457 0.79872 0.81390 1.19755 1.20894 1.20884 1.22368 0.93092 0.98978 0.99185 0.94251 0.89865 0.94198 0.90542 0.91742 0.90676 0.90974 0.77997 0.95532 0.96670 0.89188 0.92654 0.90918 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.36 16 2 O -0.38 -4.85 10.42 -35.23 -0.37 -5.22 16 3 C 0.08 0.96 3.35 -25.05 -0.08 0.87 16 4 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 5 C -0.14 -1.61 6.56 -25.61 -0.17 -1.78 16 6 C -0.11 -1.40 6.35 -25.61 -0.16 -1.56 16 7 C -0.12 -1.68 3.25 -90.11 -0.29 -1.97 16 8 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 9 C 0.51 10.23 6.96 -10.99 -0.08 10.15 16 10 O -0.55 -13.54 15.38 5.56 0.09 -13.45 16 11 N -0.71 -14.85 5.06 -54.93 -0.28 -15.13 16 12 C 0.26 6.78 2.56 -69.08 -0.18 6.60 16 13 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 14 C -0.15 -3.71 9.26 37.15 0.34 -3.37 16 15 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -25.13 11.32 55.43 0.63 -24.50 16 19 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.10 -1.42 5.66 -24.73 -0.14 -1.56 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.30 8.11 -51.93 -0.42 -0.12 16 27 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.09 7.83 -51.93 -0.41 0.69 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.39 7.00 8.54 -40.82 -0.35 6.66 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.61 7.46 -51.93 -0.39 1.22 16 LS Contribution 304.51 15.07 4.59 4.59 Total: -1.00 -31.24 304.51 -6.44 -37.68 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.02 Total: 4.42 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.06 Total: -4.09 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.35 Total: -39.63 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.28 Total: -18.67 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.24 -6.44 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596998510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.930 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds