Wall clock time and date at job start Mon Mar 30 2020 03:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 113.99944 * 2 1 4 4 H 1.09007 * 109.46998 * 29.99877 * 3 2 1 5 5 C 1.50700 * 109.47138 * 149.99712 * 3 2 1 6 6 O 1.21283 * 119.99803 * 5.00047 * 5 3 2 7 7 N 1.34777 * 119.99675 * 185.27922 * 5 3 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 3 9 9 H 1.09007 * 109.47747 * 35.00142 * 8 7 5 10 10 C 1.53001 * 109.47313 * 274.99614 * 8 7 5 11 11 C 1.50707 * 109.46997 * 154.99586 * 8 7 5 12 12 H 1.07998 * 120.00049 * 359.97438 * 11 8 7 13 13 C 1.37881 * 119.99925 * 179.97438 * 11 8 7 14 14 N 1.31517 * 119.99779 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99556 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47324 * 90.00474 * 15 13 11 17 17 H 1.48504 * 109.46894 * 210.00251 * 15 13 11 18 18 H 1.48498 * 109.47557 * 330.00047 * 15 13 11 19 19 C 1.52993 * 109.47255 * 269.99988 * 3 2 1 20 20 C 1.53785 * 113.61671 * 159.13450 * 19 3 2 21 21 C 1.53958 * 87.02043 * 220.04954 * 20 19 3 22 22 C 1.53782 * 87.11360 * 25.36047 * 21 20 19 23 23 H 1.09001 * 109.46913 * 60.00456 * 1 2 3 24 24 H 1.09004 * 109.47180 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47617 * 300.00145 * 1 2 3 26 26 H 0.97000 * 119.99894 * 359.71837 * 7 5 3 27 27 H 1.09003 * 109.47371 * 180.02562 * 10 8 7 28 28 H 1.09002 * 109.46839 * 300.00218 * 10 8 7 29 29 H 1.08998 * 109.46617 * 60.00312 * 10 8 7 30 30 H 0.97001 * 119.99544 * 179.97438 * 14 13 11 31 31 H 1.09004 * 112.85312 * 290.33430 * 19 3 2 32 32 H 1.08997 * 113.60920 * 334.56781 * 20 19 3 33 33 H 1.08994 * 113.61055 * 105.46998 * 20 19 3 34 34 H 1.09004 * 113.53127 * 270.81346 * 21 20 19 35 35 H 1.08995 * 113.74596 * 139.94852 * 21 20 19 36 36 H 1.08999 * 113.61641 * 220.09184 * 22 21 20 37 37 H 1.09001 * 113.61016 * 89.18520 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3386 1.2640 0.7105 6 8 3.7896 0.2045 1.0915 7 7 4.0226 2.4048 0.9274 8 6 5.3111 2.3651 1.6234 9 1 5.8415 1.4515 1.3544 10 6 5.0754 2.3917 3.1349 11 6 6.1357 3.5611 1.2224 12 1 5.7398 4.2788 0.5192 13 6 7.3957 3.7391 1.7534 14 7 7.8780 2.8649 2.6094 15 14 8.4174 5.2220 1.2569 16 1 8.1385 6.3481 2.1839 17 1 9.8595 4.8734 1.3212 18 1 8.0665 5.6233 -0.1291 19 6 2.2176 1.7714 -1.4424 20 6 2.3476 3.2972 -1.5844 21 6 1.4919 3.1709 -2.8580 22 6 0.9120 1.8842 -2.2472 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.6619 3.2520 0.6226 27 1 6.0341 2.3626 3.6528 28 1 4.5451 3.3053 3.4039 29 1 4.4791 1.5266 3.4248 30 1 8.7645 2.9900 2.9827 31 1 3.0016 1.2166 -1.9579 32 1 1.8596 3.8532 -0.7839 33 1 3.3671 3.6327 -1.7737 34 1 2.0781 2.9999 -3.7609 35 1 0.7580 3.9683 -2.9745 36 1 0.7744 1.0808 -2.9709 37 1 0.0309 2.0533 -1.6283 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597000390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:28 Heat of formation + Delta-G solvation = -90.340625 kcal Electronic energy + Delta-G solvation = -18083.848498 eV Core-core repulsion = 15246.991114 eV Total energy + Delta-G solvation = -2836.857384 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.32731 -39.47159 -37.89855 -36.62456 -34.33857 -31.69373 -29.74182 -27.37993 -27.28666 -26.40719 -24.78256 -22.77857 -21.23527 -20.38092 -19.15719 -17.98733 -17.50237 -17.16630 -16.79349 -16.28416 -15.92296 -15.42455 -15.17785 -14.53670 -14.42076 -14.16270 -13.71018 -13.39161 -13.03943 -12.98176 -12.88338 -12.78194 -12.71947 -12.40213 -12.28595 -12.14037 -11.83046 -11.37079 -11.23998 -11.10992 -10.81505 -10.60665 -10.16494 -9.77764 -8.17399 -6.35457 1.45285 1.46551 1.57055 1.72916 2.13995 2.44211 3.07964 3.13428 3.57442 3.71181 3.82800 3.92541 4.01174 4.17348 4.38703 4.56097 4.57220 4.72996 4.79491 4.84456 4.89475 4.90470 4.95578 5.07427 5.12598 5.15333 5.29140 5.41099 5.56869 5.59522 5.65576 5.86995 6.08159 6.17921 6.71812 6.94246 7.31643 7.52576 8.89258 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028532 B = 0.006628 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.134883 B = 4223.521666 C = 5005.631211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.393 6.393 3 C 0.094 3.906 4 H 0.110 0.890 5 C 0.494 3.506 6 O -0.595 6.595 7 N -0.696 5.696 8 C 0.269 3.731 9 H -0.006 1.006 10 C -0.134 4.134 11 C -0.545 4.545 12 H 0.076 0.924 13 C 0.013 3.987 14 N -0.919 5.919 15 Si 0.975 3.025 16 H -0.269 1.269 17 H -0.288 1.288 18 H -0.262 1.262 19 C -0.136 4.136 20 C -0.143 4.143 21 C -0.127 4.127 22 C -0.123 4.123 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.405 0.595 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.009 0.991 30 H 0.265 0.735 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.418 3.926 -9.144 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.312 6.312 3 C 0.033 3.967 4 H 0.128 0.872 5 C 0.280 3.720 6 O -0.476 6.476 7 N -0.346 5.346 8 C 0.166 3.834 9 H 0.012 0.988 10 C -0.193 4.193 11 C -0.583 4.583 12 H 0.094 0.906 13 C -0.187 4.187 14 N -0.558 5.558 15 Si 0.799 3.201 16 H -0.195 1.195 17 H -0.214 1.214 18 H -0.187 1.187 19 C -0.155 4.155 20 C -0.180 4.180 21 C -0.165 4.165 22 C -0.160 4.160 23 H 0.091 0.909 24 H 0.114 0.886 25 H 0.069 0.931 26 H 0.241 0.759 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.827 2.972 -8.761 18.332 hybrid contribution 0.822 0.615 0.116 1.034 sum -15.004 3.587 -8.646 17.684 Atomic orbital electron populations 1.23296 0.78822 1.04283 1.01797 1.87999 1.21959 1.26129 1.95096 1.22017 0.91574 0.86765 0.96319 0.87200 1.21294 0.87558 0.83890 0.79265 1.90632 1.71149 1.32034 1.53741 1.46207 1.22052 1.08709 1.57679 1.18377 0.79873 0.96069 0.89084 0.98804 1.21910 1.00977 0.97399 0.99020 1.21519 1.01044 1.08563 1.27134 0.90582 1.25845 0.98706 0.99590 0.94565 1.70068 1.18058 1.37067 1.30561 0.85302 0.77088 0.78598 0.79090 1.19451 1.21379 1.18652 1.23028 1.01026 0.98099 0.93359 1.23122 1.01391 0.93413 1.00074 1.22768 0.99160 0.98034 0.96512 1.22995 0.95551 0.98647 0.98771 0.90884 0.88590 0.93060 0.75901 0.91365 0.93698 0.97225 0.92543 0.90953 0.88049 0.91842 0.90210 0.89127 0.90804 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 10.58 113.37 1.20 1.47 16 2 O -0.39 -12.89 9.85 -129.99 -1.28 -14.17 16 3 C 0.09 2.91 2.44 29.85 0.07 2.98 16 4 H 0.11 2.64 7.62 -2.38 -0.02 2.62 16 5 C 0.49 21.49 7.14 87.66 0.63 22.11 16 6 O -0.59 -32.67 16.17 15.95 0.26 -32.41 16 7 N -0.70 -29.95 4.96 -446.08 -2.21 -32.16 16 8 C 0.27 14.42 2.56 44.25 0.11 14.53 16 9 H -0.01 -0.38 7.58 -2.38 -0.02 -0.40 16 10 C -0.13 -7.01 9.26 71.98 0.67 -6.34 16 11 C -0.54 -29.02 8.73 25.60 0.22 -28.80 16 12 H 0.08 3.74 7.74 -2.91 -0.02 3.71 16 13 C 0.01 0.69 5.30 84.66 0.45 1.14 16 14 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 15 Si 0.97 41.96 29.54 68.60 2.03 43.99 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 19 C -0.14 -3.47 3.32 -10.27 -0.03 -3.51 16 20 C -0.14 -2.98 6.20 31.18 0.19 -2.79 16 21 C -0.13 -2.04 8.09 31.18 0.25 -1.79 16 22 C -0.12 -2.10 6.14 31.12 0.19 -1.91 16 23 H 0.07 1.09 5.04 -2.39 -0.01 1.08 16 24 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.05 0.91 8.08 -2.39 -0.02 0.89 16 26 H 0.41 14.40 7.13 -92.71 -0.66 13.74 16 27 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 28 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.27 14.58 8.31 -92.71 -0.77 13.80 16 31 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.10 1.76 7.98 -2.39 -0.02 1.74 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.10 1.35 6.49 -2.39 -0.02 1.33 16 Total: -1.00 -72.48 300.09 3.38 -69.10 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.39 Total: 21.76 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 3.95 Total: -2.89 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -1.97 Total: -85.38 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -1.02 Total: -46.58 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -72.48 3.38 -69.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597000390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.237 kcal (2) G-P(sol) polarization free energy of solvation -72.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds