Wall clock time and date at job start Mon Mar 30 2020 03:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47177 * 119.99571 * 2 1 3 5 5 H 1.08001 * 120.00089 * 120.00164 * 4 2 1 6 6 C 1.37882 * 120.00151 * 299.99997 * 4 2 1 7 7 N 1.31511 * 119.99699 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99903 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47331 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47191 * 120.00447 * 8 6 4 11 11 H 1.48504 * 109.47058 * 239.99997 * 8 6 4 12 12 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 13 13 O 1.21283 * 120.00472 * 240.00297 * 12 2 1 14 14 N 1.34777 * 119.99538 * 59.99635 * 12 2 1 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 2 16 16 C 1.53004 * 109.47198 * 180.27868 * 15 14 12 17 17 O 1.42903 * 109.46927 * 64.99809 * 16 15 14 18 18 C 1.42894 * 113.99688 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47257 * 180.02562 * 18 17 16 20 20 C 1.53005 * 117.49914 * 243.62573 * 19 18 17 21 21 C 1.52998 * 117.50158 * 175.00234 * 19 18 17 22 22 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 23 23 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 24 24 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 25 25 H 0.97004 * 119.99534 * 179.97438 * 7 6 4 26 26 H 0.97001 * 120.00485 * 0.02562 * 14 12 2 27 27 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 28 28 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 29 29 H 1.09000 * 109.47275 * 184.99914 * 16 15 14 30 30 H 1.08998 * 109.46700 * 305.00136 * 16 15 14 31 31 H 1.08998 * 109.47845 * 300.00480 * 18 17 16 32 32 H 1.08999 * 109.47565 * 60.00461 * 18 17 16 33 33 H 1.08996 * 115.55034 * 29.32598 * 19 18 17 34 34 H 1.08997 * 117.49971 * 359.97438 * 20 19 18 35 35 H 1.09003 * 117.50051 * 145.01556 * 20 19 18 36 36 H 1.09003 * 117.50039 * 214.97567 * 21 19 18 37 37 H 1.08992 * 117.50082 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9436 0.8304 2.6033 8 14 2.3214 -1.1201 4.0080 9 1 3.1454 -2.2875 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1660 -1.5864 4.8162 12 6 2.0324 -0.7105 -1.2304 13 8 2.7296 -1.6966 -1.1191 14 7 1.7067 -0.2501 -2.4545 15 6 2.2000 -0.9372 -3.6506 16 6 1.6946 -0.2128 -4.8999 17 8 2.2641 1.0968 -4.9543 18 6 1.8548 1.8618 -6.0897 19 6 2.5223 3.2377 -6.0451 20 6 1.6127 4.4601 -5.9054 21 6 2.3029 4.1685 -7.2394 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.7089 1.1616 3.4844 26 1 1.1493 0.5388 -2.5436 27 1 3.2901 -0.9367 -3.6464 28 1 1.8372 -1.9650 -3.6549 29 1 1.9867 -0.7732 -5.7880 30 1 0.6081 -0.1352 -4.8602 31 1 2.1505 1.3443 -7.0023 32 1 0.7716 1.9825 -6.0753 33 1 3.4931 3.2735 -5.5509 34 1 0.5387 4.2840 -5.8458 35 1 1.9849 5.3002 -5.3191 36 1 3.1293 4.8168 -7.5308 37 1 1.6827 3.8008 -8.0568 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597174606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:32 Heat of formation + Delta-G solvation = -93.652938 kcal Electronic energy + Delta-G solvation = -17066.966529 eV Core-core repulsion = 14229.965512 eV Total energy + Delta-G solvation = -2837.001016 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.58426 -39.36570 -37.61034 -35.78464 -35.45816 -32.65580 -30.36421 -27.61024 -27.18171 -24.77982 -23.25382 -23.11999 -21.55710 -21.11501 -18.38132 -17.98150 -17.80780 -17.23432 -16.67414 -16.41764 -15.92476 -15.75777 -15.26504 -14.68696 -14.63194 -14.09954 -13.89240 -13.40105 -13.21962 -12.96207 -12.65968 -12.59927 -12.46383 -12.35563 -12.18399 -12.02294 -11.97058 -11.32182 -11.17733 -11.02130 -10.60848 -10.44515 -10.27153 -9.94190 -8.14358 -6.24905 1.40029 1.41498 1.55619 1.95002 2.37105 2.50181 2.60583 2.98219 3.14904 3.81657 3.98533 4.01056 4.16562 4.23014 4.36713 4.40418 4.44975 4.58628 4.70097 4.72654 4.76628 4.79327 4.89838 4.97029 5.03365 5.04280 5.25235 5.26772 5.50735 5.61403 5.76126 5.95374 6.22406 6.27982 6.75528 6.87787 7.40756 7.56246 8.91828 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033114 B = 0.004386 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.371427 B = 6382.823546 C = 6868.860467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.022 3.978 3 H 0.037 0.963 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.272 1.272 12 C 0.519 3.481 13 O -0.591 6.591 14 N -0.721 5.721 15 C 0.118 3.882 16 C 0.061 3.939 17 O -0.409 6.409 18 C 0.091 3.909 19 C -0.174 4.174 20 C -0.183 4.183 21 C -0.158 4.158 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.024 0.976 25 H 0.265 0.735 26 H 0.409 0.591 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 5.440 -20.195 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.001 3.999 3 H 0.055 0.945 4 C -0.568 4.568 5 H 0.066 0.934 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.783 3.217 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.198 1.198 12 C 0.308 3.692 13 O -0.471 6.471 14 N -0.375 5.375 15 C -0.006 4.006 16 C -0.015 4.015 17 O -0.329 6.329 18 C 0.015 3.985 19 C -0.193 4.193 20 C -0.220 4.220 21 C -0.195 4.195 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.245 0.755 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.851 4.919 -19.875 20.558 hybrid contribution 0.112 -0.123 0.869 0.885 sum -1.739 4.796 -19.006 19.679 Atomic orbital electron populations 1.21533 0.94873 0.99479 1.01647 1.18819 0.95537 0.95779 0.89810 0.94488 1.21333 1.31542 1.12702 0.91181 0.93374 1.25625 0.95197 0.95767 1.01486 1.69965 1.37306 1.23608 1.24241 0.85515 0.78374 0.78554 0.79270 1.20451 1.19960 1.19760 1.21540 0.78236 0.83694 0.85730 1.90495 1.40100 1.28855 1.87627 1.45963 1.54098 1.32566 1.04840 1.21426 0.99276 0.96278 0.83602 1.22752 0.98266 0.83615 0.96887 1.87937 1.71205 1.27009 1.46728 1.22131 0.98043 0.90046 0.88231 1.22162 1.01140 0.90882 1.05081 1.23152 0.98978 0.99038 1.00838 1.23058 1.03476 1.01406 0.91534 0.91126 0.93061 0.95646 0.92602 0.75503 0.92959 0.90060 0.89170 0.90868 0.91492 0.92024 0.88629 0.88038 0.88777 0.87724 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.87 71.98 0.64 -4.84 16 2 C 0.02 1.14 2.64 -12.29 -0.03 1.11 16 3 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.53 -31.65 8.37 25.60 0.21 -31.44 16 5 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -52.26 11.32 21.45 0.24 -52.02 16 8 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 9 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.52 24.99 7.15 87.66 0.63 25.61 16 13 O -0.59 -32.77 15.46 -3.04 -0.05 -32.82 16 14 N -0.72 -26.01 5.40 -463.05 -2.50 -28.51 16 15 C 0.12 3.44 6.06 86.38 0.52 3.97 16 16 C 0.06 1.24 6.07 71.98 0.44 1.68 16 17 O -0.41 -9.88 10.29 -148.98 -1.53 -11.41 16 18 C 0.09 1.61 6.22 71.98 0.45 2.06 16 19 C -0.17 -3.18 6.06 -10.79 -0.07 -3.24 16 20 C -0.18 -2.92 10.18 30.60 0.31 -2.60 16 21 C -0.16 -2.05 10.25 30.59 0.31 -1.74 16 22 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 23 H 0.05 1.93 7.56 -2.39 -0.02 1.92 16 24 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 26 H 0.41 12.97 7.89 -92.71 -0.73 12.24 16 27 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.93 7.88 -2.39 -0.02 0.91 16 33 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.10 1.47 8.03 -2.39 -0.02 1.45 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.69 312.54 2.37 -68.32 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.31 Total: 16.54 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 3.86 Total: -7.96 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -2.26 Total: -80.53 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -1.58 Total: -44.23 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -70.69 2.37 -68.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597174606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.336 kcal (2) G-P(sol) polarization free energy of solvation -70.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds