Wall clock time and date at job start Mon Mar 30 2020 03:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46978 * 2 1 4 4 C 1.50699 * 109.46789 * 240.00584 * 2 1 3 5 5 H 1.08003 * 120.00291 * 245.35917 * 4 2 1 6 6 C 1.37881 * 120.00358 * 65.35451 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.14139 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.14190 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 C 1.50700 * 109.47503 * 120.00543 * 2 1 3 13 13 O 1.21283 * 120.00025 * 119.99315 * 12 2 1 14 14 N 1.34775 * 119.99813 * 300.00109 * 12 2 1 15 15 C 1.46501 * 119.99780 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.46944 * 179.97438 * 15 14 12 17 17 C 1.52993 * 110.45869 * 59.29918 * 16 15 14 18 18 C 1.54513 * 110.51171 * 181.90701 * 16 15 14 19 19 C 1.54472 * 104.06640 * 118.64140 * 18 16 15 20 20 O 1.44428 * 104.80280 * 23.97556 * 19 18 16 21 21 C 1.44642 * 105.37190 * 319.56990 * 20 19 18 22 22 H 1.08997 * 109.47140 * 174.98976 * 1 2 3 23 23 H 1.09001 * 109.46657 * 294.98322 * 1 2 3 24 24 H 1.08994 * 109.47311 * 54.98096 * 1 2 3 25 25 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 26 26 H 0.96999 * 120.00053 * 359.97438 * 14 12 2 27 27 H 1.09001 * 109.46822 * 299.99490 * 15 14 12 28 28 H 1.09003 * 109.47388 * 59.99641 * 15 14 12 29 29 H 1.08996 * 109.47200 * 60.69806 * 17 16 15 30 30 H 1.08998 * 109.47539 * 180.70343 * 17 16 15 31 31 H 1.09000 * 109.47140 * 300.70023 * 17 16 15 32 32 H 1.09002 * 110.50614 * 237.29292 * 18 16 15 33 33 H 1.09004 * 110.50660 * 359.85445 * 18 16 15 34 34 H 1.08995 * 110.37182 * 142.80873 * 19 18 16 35 35 H 1.09000 * 110.37298 * 265.03734 * 19 18 16 36 36 H 1.09004 * 110.33619 * 281.58780 * 21 20 19 37 37 H 1.08998 * 110.50945 * 159.18494 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5799 -1.6362 -1.1340 6 6 1.7926 -0.1783 -2.4798 7 7 1.2153 0.9979 -2.5939 8 14 2.2878 -1.1281 -4.0102 9 1 1.2111 -2.0861 -4.3682 10 1 2.5009 -0.1805 -5.1335 11 1 3.5450 -1.8726 -3.7455 12 6 2.0325 -0.7105 1.2304 13 8 2.7297 -1.6966 1.1190 14 7 1.7069 -0.2502 2.4545 15 6 2.1949 -0.9412 3.6506 16 6 1.6855 -0.2196 4.8999 17 6 0.1559 -0.1901 4.9142 18 6 2.2258 -0.9013 6.1770 19 6 3.0609 0.2005 6.8660 20 8 2.5133 1.4421 6.3715 21 6 2.2552 1.2148 4.9666 22 1 -0.3633 -1.0237 -0.0897 23 1 -0.3633 0.4341 0.9315 24 1 -0.3633 0.5897 -0.8416 25 1 1.0464 1.3720 -3.4727 26 1 1.1495 0.5387 2.5436 27 1 1.8311 -1.9687 3.6503 28 1 3.2849 -0.9417 3.6507 29 1 -0.2271 -1.2105 4.9258 30 1 -0.1891 0.3377 5.8032 31 1 -0.2059 0.3236 4.0235 32 1 1.4031 -1.2152 6.8195 33 1 2.8537 -1.7539 5.9182 34 1 2.9485 0.1407 7.9485 35 1 4.1111 0.1100 6.5887 36 1 3.1812 1.2822 4.3955 37 1 1.5242 1.9312 4.5918 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597228643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:15 Heat of formation + Delta-G solvation = -101.422515 kcal Electronic energy + Delta-G solvation = -17847.245776 eV Core-core repulsion = 15009.907846 eV Total energy + Delta-G solvation = -2837.337930 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12097 -38.53447 -35.27619 -33.67267 -32.46998 -30.49764 -29.76947 -26.88155 -25.65899 -25.08795 -23.00277 -22.10621 -19.61207 -19.20858 -16.70628 -16.29018 -16.13304 -15.37793 -15.33776 -14.87910 -14.56494 -14.26930 -13.78474 -13.29862 -12.99314 -12.87020 -12.44689 -12.40420 -11.83202 -11.56558 -11.52010 -11.12506 -10.98531 -10.86926 -10.81967 -10.77134 -10.61621 -10.26506 -9.94033 -9.83754 -8.99037 -8.54911 -8.44072 -8.35369 -6.03938 -4.03927 3.35284 3.40413 3.46755 3.74537 3.78482 3.89463 4.40481 4.49996 4.55719 4.69083 4.93635 5.05424 5.09230 5.31760 5.45943 5.51698 5.56993 5.65117 5.70264 5.75125 5.83464 5.93840 5.99529 6.13533 6.29709 6.58101 6.63899 6.78897 6.88798 7.07254 7.46175 7.67278 7.98529 8.10984 8.45758 9.05110 9.25265 9.60900 11.06400 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.048270 B = 0.004981 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.925420 B = 5620.198455 C = 5755.901522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.027 3.973 3 H 0.057 0.943 4 C -0.502 4.502 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.547 6.547 14 N -0.747 5.747 15 C 0.135 3.865 16 C -0.106 4.106 17 C -0.136 4.136 18 C -0.144 4.144 19 C 0.045 3.955 20 O -0.377 6.377 21 C 0.052 3.948 22 H 0.035 0.965 23 H 0.014 0.986 24 H 0.077 0.923 25 H 0.261 0.739 26 H 0.395 0.605 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.133 0.096 16.726 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.006 3.994 3 H 0.075 0.925 4 C -0.540 4.540 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.422 6.422 14 N -0.402 5.402 15 C 0.010 3.990 16 C -0.107 4.107 17 C -0.194 4.194 18 C -0.182 4.182 19 C -0.032 4.032 20 O -0.295 6.295 21 C -0.024 4.024 22 H 0.054 0.946 23 H 0.033 0.967 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.229 0.771 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.705 -0.314 16.609 16.627 hybrid contribution -0.014 -0.287 -0.914 0.958 sum -0.719 -0.601 15.695 15.723 Atomic orbital electron populations 1.21683 0.96868 1.00360 0.99479 1.18877 0.93762 0.97246 0.89474 0.92483 1.21106 1.34979 1.08761 0.89152 0.90856 1.24953 0.95273 0.94827 0.99112 1.69934 1.43632 1.16218 1.23799 0.86495 0.79138 0.79639 0.82109 1.20599 1.21368 1.19816 1.21970 0.78478 0.84227 0.84453 1.90530 1.37979 1.26930 1.86804 1.46330 1.55638 1.32652 1.05579 1.21221 0.98631 0.95970 0.83132 1.22200 0.97368 0.95959 0.95176 1.21839 0.92884 1.02427 1.02213 1.23008 1.00481 0.98917 0.95817 1.23391 0.97037 0.83465 0.99309 1.89133 1.83653 1.33613 1.23146 1.23632 1.00413 0.95418 0.82980 0.94616 0.96716 0.90426 0.92980 0.77101 0.91841 0.92038 0.92110 0.92090 0.91937 0.90244 0.90040 0.89253 0.92249 0.91592 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.91 37.16 0.33 -2.49 16 2 C 0.03 0.68 2.51 -92.92 -0.23 0.45 16 3 H 0.06 1.47 8.12 -51.93 -0.42 1.05 16 4 C -0.50 -14.27 8.30 -34.44 -0.29 -14.55 16 5 H 0.07 2.21 6.78 -52.48 -0.36 1.85 16 6 C 0.06 1.65 5.29 -17.82 -0.09 1.56 16 7 N -0.90 -25.35 11.98 55.43 0.66 -24.68 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.52 11.72 7.15 -10.99 -0.08 11.64 16 13 O -0.55 -14.27 15.47 5.55 0.09 -14.18 16 14 N -0.75 -12.58 4.95 -60.29 -0.30 -12.88 16 15 C 0.13 1.92 4.31 -4.04 -0.02 1.91 16 16 C -0.11 -1.17 0.75 -152.94 -0.11 -1.28 16 17 C -0.14 -1.40 8.11 37.15 0.30 -1.10 16 18 C -0.14 -1.33 6.38 -25.16 -0.16 -1.49 16 19 C 0.04 0.43 7.64 37.93 0.29 0.71 16 20 O -0.38 -4.61 11.65 -35.23 -0.41 -5.02 16 21 C 0.05 0.60 6.27 37.93 0.24 0.84 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.01 0.26 7.43 -51.93 -0.39 -0.13 16 24 H 0.08 1.90 6.84 -51.93 -0.36 1.54 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.39 5.79 6.42 -40.82 -0.26 5.53 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.66 6.88 -51.93 -0.36 0.30 16 32 H 0.08 0.66 7.73 -51.93 -0.40 0.25 16 33 H 0.08 0.71 7.73 -51.93 -0.40 0.31 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.80 7.85 -51.93 -0.41 0.40 16 37 H 0.09 1.01 7.87 -51.93 -0.41 0.60 16 LS Contribution 299.45 15.07 4.51 4.51 Total: -1.00 -31.60 299.45 -6.14 -37.74 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.85 Total: 1.44 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 0.18 Total: -3.81 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.37 Total: -37.56 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.32 Total: -19.20 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.60 -6.14 -37.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597228643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.682 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds