Wall clock time and date at job start Mon Mar 30 2020 03:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99968 * 2 1 4 4 C 1.53000 * 109.47333 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.88578 * 57.42526 * 4 3 2 6 6 C 1.55165 * 111.00265 * 293.54641 * 4 3 2 7 7 C 1.54320 * 102.94098 * 206.42209 * 6 4 3 8 8 N 1.47025 * 107.27075 * 22.19209 * 7 6 4 9 9 C 1.34773 * 125.64543 * 181.10257 * 8 7 6 10 10 O 1.21283 * 119.99916 * 174.64917 * 9 8 7 11 11 C 1.50701 * 120.00313 * 354.64556 * 9 8 7 12 12 H 1.08999 * 109.46903 * 334.22698 * 11 9 8 13 13 C 1.52997 * 109.47365 * 214.22661 * 11 9 8 14 14 C 1.50702 * 109.46867 * 94.22695 * 11 9 8 15 15 H 1.07996 * 120.00212 * 0.02562 * 14 11 9 16 16 C 1.37883 * 119.99641 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00076 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99732 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47162 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47216 * 120.00207 * 18 16 14 21 21 H 1.48507 * 109.47079 * 239.99907 * 18 16 14 22 22 C 1.47419 * 108.70507 * 1.06294 * 8 7 6 23 23 H 1.09000 * 109.47671 * 300.00073 * 1 2 3 24 24 H 1.09003 * 109.47052 * 60.00092 * 1 2 3 25 25 H 1.09004 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46775 * 59.99832 * 3 2 1 27 27 H 1.08997 * 109.47082 * 299.99714 * 3 2 1 28 28 H 1.08994 * 110.72193 * 324.78935 * 6 4 3 29 29 H 1.09000 * 110.71732 * 87.88371 * 6 4 3 30 30 H 1.08996 * 109.88073 * 141.61075 * 7 6 4 31 31 H 1.09002 * 109.88420 * 262.77635 * 7 6 4 32 32 H 1.09004 * 109.47446 * 63.45846 * 13 11 9 33 33 H 1.09000 * 109.47503 * 183.45981 * 13 11 9 34 34 H 1.09001 * 109.47407 * 303.46075 * 13 11 9 35 35 H 0.96997 * 120.00206 * 180.02562 * 17 16 14 36 36 H 1.09004 * 110.36840 * 217.03462 * 22 8 7 37 37 H 1.09002 * 110.37191 * 94.70263 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8799 0.6074 -0.8573 6 6 4.0436 0.5642 1.3289 7 6 5.4740 1.1306 1.4500 8 7 5.5306 2.3516 0.6329 9 6 6.6165 3.1306 0.4590 10 8 6.5762 4.0630 -0.3156 11 6 7.8810 2.8432 1.2269 12 1 7.6338 2.3221 2.1518 13 6 8.5879 4.1594 1.5564 14 6 8.7907 1.9798 0.3915 15 1 8.4842 1.6705 -0.5968 16 6 10.0145 1.5847 0.8890 17 7 10.3879 1.9618 2.0922 18 14 11.1419 0.5139 -0.1463 19 1 10.4933 0.2294 -1.4516 20 1 12.4260 1.2236 -0.3752 21 1 11.4023 -0.7634 0.5653 22 6 4.2031 2.5822 0.0348 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.4277 0.8897 2.1671 29 1 4.0609 -0.5237 1.2645 30 1 5.6907 1.3707 2.4909 31 1 6.1940 0.4018 1.0778 32 1 7.9547 4.7580 2.2112 33 1 9.5326 3.9489 2.0577 34 1 8.7802 4.7092 0.6350 35 1 11.2490 1.6841 2.4420 36 1 4.3057 2.9782 -0.9755 37 1 3.6215 3.2654 0.6538 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597283339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:22 Heat of formation + Delta-G solvation = -111.885982 kcal Electronic energy + Delta-G solvation = -17736.620039 eV Core-core repulsion = 14898.828379 eV Total energy + Delta-G solvation = -2837.791660 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.04251 -39.23478 -37.89752 -35.83321 -33.36603 -32.23758 -30.45445 -28.13479 -27.31201 -26.22061 -24.44994 -23.22968 -21.39562 -20.01871 -18.58487 -18.07666 -17.65602 -16.93607 -16.68815 -16.45829 -15.83295 -15.57975 -15.11374 -14.61941 -14.46121 -13.87565 -13.71653 -13.58363 -13.43173 -12.94174 -12.88054 -12.77141 -12.60385 -12.35741 -12.26614 -12.15420 -12.04956 -11.73331 -11.59303 -11.11339 -10.65257 -10.55524 -10.38688 -9.56259 -8.18536 -6.33998 1.40267 1.42354 1.53622 1.83976 2.15479 2.43414 2.81463 3.10002 3.58937 3.65133 3.94660 4.22968 4.30729 4.36168 4.37061 4.48855 4.60000 4.63086 4.64834 4.71116 4.78889 4.91750 4.93946 4.95632 4.96605 5.08344 5.12373 5.29758 5.39462 5.52657 5.69112 5.84661 6.13295 6.26820 6.60595 6.69025 7.30453 7.40380 8.87120 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032463 B = 0.005536 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.320656 B = 5056.707077 C = 5479.527155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.080 3.920 4 C -0.093 4.093 5 H 0.081 0.919 6 C -0.105 4.105 7 C 0.100 3.900 8 N -0.626 5.626 9 C 0.539 3.461 10 O -0.599 6.599 11 C 0.032 3.968 12 H 0.040 0.960 13 C -0.118 4.118 14 C -0.527 4.527 15 H 0.041 0.959 16 C 0.027 3.973 17 N -0.906 5.906 18 Si 0.961 3.039 19 H -0.275 1.275 20 H -0.277 1.277 21 H -0.269 1.269 22 C 0.108 3.892 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.023 0.977 35 H 0.268 0.732 36 H 0.061 0.939 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.722 -5.102 0.038 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.003 3.997 4 C -0.112 4.112 5 H 0.099 0.901 6 C -0.143 4.143 7 C -0.022 4.022 8 N -0.360 5.360 9 C 0.331 3.669 10 O -0.480 6.480 11 C 0.011 3.989 12 H 0.058 0.942 13 C -0.176 4.176 14 C -0.565 4.565 15 H 0.059 0.941 16 C -0.174 4.174 17 N -0.544 5.544 18 Si 0.786 3.214 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.194 1.194 22 C -0.014 4.014 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.424 -4.756 -0.230 18.063 hybrid contribution 0.746 -0.060 -0.528 0.916 sum -16.679 -4.816 -0.758 17.376 Atomic orbital electron populations 1.22921 0.79443 1.03767 1.00887 1.87841 1.21385 1.28157 1.95620 1.22342 0.90877 0.84821 1.01676 1.22221 0.94538 0.94953 0.99511 0.90056 1.22605 0.92770 1.01628 0.97281 1.22142 0.99166 0.85694 0.95209 1.48580 1.10194 1.27184 1.50017 1.21385 0.84492 0.79746 0.81283 1.90497 1.84575 1.33303 1.39666 1.18801 0.88955 0.95706 0.95421 0.94223 1.21508 1.01699 0.95574 0.98806 1.20891 1.02705 1.31680 1.01266 0.94053 1.25610 0.98608 0.97000 0.96159 1.69962 1.22020 1.45360 1.17087 0.85466 0.78472 0.78748 0.78736 1.20009 1.20306 1.19413 1.22179 0.83136 0.97329 0.98746 0.92974 0.93326 0.88642 0.91381 0.92010 0.88898 0.88658 0.91298 0.92336 0.95531 0.90598 0.95810 0.92265 0.92020 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -8.19 10.56 -148.98 -1.57 -9.76 16 3 C 0.08 1.47 5.38 71.98 0.39 1.86 16 4 C -0.09 -2.24 3.33 -9.40 -0.03 -2.27 16 5 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 6 C -0.11 -2.47 6.28 31.78 0.20 -2.27 16 7 C 0.10 3.30 6.17 86.73 0.53 3.83 16 8 N -0.63 -24.65 3.33 -811.80 -2.70 -27.35 16 9 C 0.54 26.73 6.78 87.66 0.59 27.33 16 10 O -0.60 -32.95 16.41 -3.04 -0.05 -33.00 16 11 C 0.03 1.71 2.25 -12.29 -0.03 1.68 16 12 H 0.04 2.10 6.99 -2.39 -0.02 2.09 16 13 C -0.12 -6.21 8.73 71.98 0.63 -5.58 16 14 C -0.53 -29.88 8.55 25.60 0.22 -29.66 16 15 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 16 C 0.03 1.46 5.30 84.66 0.45 1.91 16 17 N -0.91 -50.63 11.30 21.45 0.24 -50.39 16 18 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 C 0.11 3.31 6.40 86.86 0.56 3.86 16 23 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.07 1.06 8.11 -2.39 -0.02 1.04 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.83 8.01 -2.39 -0.02 1.81 16 29 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 2.22 7.72 -2.39 -0.02 2.21 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 4.19 5.99 -2.39 -0.01 4.18 16 34 H 0.02 1.27 7.73 -2.39 -0.02 1.25 16 35 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 36 H 0.06 2.05 7.99 -2.39 -0.02 2.03 16 37 H 0.08 2.13 8.04 -2.39 -0.02 2.11 16 Total: -1.00 -67.79 304.38 3.73 -64.06 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.03 Total: 8.70 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 4.76 Total: 2.27 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -2.46 Total: -77.74 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.62 Total: -42.76 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -67.79 3.73 -64.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597283339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.825 kcal (2) G-P(sol) polarization free energy of solvation -67.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds