Wall clock time and date at job start Mon Mar 30 2020 03:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 114.00230 * 2 1 4 4 C 1.53003 * 109.47565 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.91380 * 308.90350 * 4 3 2 6 6 C 1.55158 * 111.00134 * 72.80221 * 4 3 2 7 7 C 1.54336 * 103.01925 * 153.38870 * 6 4 3 8 8 N 1.47030 * 107.26350 * 338.13687 * 7 6 4 9 9 C 1.34776 * 125.64527 * 178.84864 * 8 7 6 10 10 O 1.21279 * 119.99469 * 185.14102 * 9 8 7 11 11 C 1.50702 * 120.00062 * 4.87525 * 9 8 7 12 12 H 1.08996 * 109.47030 * 326.90904 * 11 9 8 13 13 C 1.53003 * 109.46747 * 206.91721 * 11 9 8 14 14 C 1.50697 * 109.47272 * 86.91701 * 11 9 8 15 15 H 1.07997 * 119.99692 * 359.97438 * 14 11 9 16 16 C 1.37879 * 119.99683 * 180.02562 * 14 11 9 17 17 N 1.31513 * 119.99990 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99899 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47055 * 89.99262 * 18 16 14 20 20 H 1.48497 * 109.47008 * 209.99619 * 18 16 14 21 21 H 1.48505 * 109.46904 * 330.00045 * 18 16 14 22 22 C 1.47423 * 108.70107 * 358.58866 * 8 7 6 23 23 H 1.08999 * 109.47129 * 59.99321 * 1 2 3 24 24 H 1.08994 * 109.47638 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46933 * 299.99865 * 1 2 3 26 26 H 1.09000 * 109.47313 * 60.00173 * 3 2 1 27 27 H 1.09003 * 109.47687 * 300.00142 * 3 2 1 28 28 H 1.08999 * 110.71995 * 271.94104 * 6 4 3 29 29 H 1.08992 * 110.72312 * 35.21697 * 6 4 3 30 30 H 1.09003 * 109.99243 * 218.67045 * 7 6 4 31 31 H 1.08994 * 109.78549 * 97.49422 * 7 6 4 32 32 H 1.09005 * 109.46974 * 303.16889 * 13 11 9 33 33 H 1.08998 * 109.47149 * 63.16823 * 13 11 9 34 34 H 1.09000 * 109.47187 * 183.16993 * 13 11 9 35 35 H 0.97005 * 119.99952 * 180.02562 * 17 16 14 36 36 H 1.09000 * 110.36365 * 143.19058 * 22 8 7 37 37 H 1.08994 * 110.36689 * 265.40161 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8732 0.5163 0.7915 6 6 4.0554 0.7141 -1.3847 7 6 5.4853 1.2929 -1.4341 8 7 5.5356 2.4130 -0.4830 9 6 6.6194 3.1684 -0.2157 10 8 6.5723 4.0089 0.6573 11 6 7.8914 2.9644 -0.9977 12 1 7.9893 1.9121 -1.2642 13 6 9.0883 3.3875 -0.1436 14 6 7.8493 3.7986 -2.2520 15 1 6.9875 4.4145 -2.4621 16 6 8.9107 3.7746 -3.1317 17 7 9.9600 3.0242 -2.8759 18 14 8.8583 4.8081 -4.6869 19 1 9.4383 6.1471 -4.4112 20 1 9.6449 4.1379 -5.7533 21 1 7.4499 4.9611 -5.1323 22 6 4.2028 2.5769 0.1254 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 4.0755 -0.3744 -1.4394 29 1 3.4468 1.1304 -2.1873 30 1 5.7081 1.6503 -2.4395 31 1 6.2037 0.5268 -1.1430 32 1 8.9627 4.4239 0.1699 33 1 9.1516 2.7469 0.7360 34 1 10.0034 3.2933 -0.7284 35 1 10.7069 3.0076 -3.4947 36 1 4.2966 2.8590 1.1740 37 1 3.6272 3.3260 -0.4183 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597283342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:29 Heat of formation + Delta-G solvation = -112.047857 kcal Electronic energy + Delta-G solvation = -17735.648790 eV Core-core repulsion = 14897.850111 eV Total energy + Delta-G solvation = -2837.798680 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04027 -39.23313 -37.90581 -35.83277 -33.35826 -32.23857 -30.45045 -28.14628 -27.29499 -26.22342 -24.44232 -23.21984 -21.41437 -20.03018 -18.48193 -18.10807 -17.71930 -16.90904 -16.70598 -16.51057 -15.72115 -15.56823 -15.19042 -14.58037 -14.47528 -13.86148 -13.74323 -13.53233 -13.46435 -12.96168 -12.87760 -12.77424 -12.58712 -12.33741 -12.24333 -12.13913 -12.05530 -11.74302 -11.60404 -11.12324 -10.64849 -10.55877 -10.38942 -9.55777 -8.17769 -6.33663 1.41918 1.43740 1.53199 1.84452 2.15172 2.44099 2.82072 3.10949 3.56402 3.64851 3.96618 4.22911 4.30970 4.35097 4.38350 4.47707 4.59070 4.62735 4.64271 4.73338 4.79272 4.91318 4.92301 4.95877 5.00204 5.04423 5.14645 5.29454 5.40518 5.52532 5.68858 5.84177 6.13372 6.25884 6.61049 6.69143 7.30953 7.40324 8.87902 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032907 B = 0.005508 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.674437 B = 5082.303628 C = 5492.015853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.078 3.922 4 C -0.089 4.089 5 H 0.089 0.911 6 C -0.108 4.108 7 C 0.100 3.900 8 N -0.624 5.624 9 C 0.538 3.462 10 O -0.600 6.600 11 C 0.032 3.968 12 H 0.039 0.961 13 C -0.117 4.117 14 C -0.527 4.527 15 H 0.045 0.955 16 C 0.026 3.974 17 N -0.907 5.907 18 Si 0.962 3.038 19 H -0.279 1.279 20 H -0.274 1.274 21 H -0.269 1.269 22 C 0.108 3.892 23 H 0.050 0.950 24 H 0.096 0.904 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.075 0.925 35 H 0.268 0.732 36 H 0.066 0.934 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.642 -7.188 1.582 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.001 3.999 4 C -0.108 4.108 5 H 0.108 0.892 6 C -0.145 4.145 7 C -0.022 4.022 8 N -0.358 5.358 9 C 0.330 3.670 10 O -0.482 6.482 11 C 0.011 3.989 12 H 0.057 0.943 13 C -0.175 4.175 14 C -0.565 4.565 15 H 0.063 0.937 16 C -0.175 4.175 17 N -0.545 5.545 18 Si 0.787 3.213 19 H -0.205 1.205 20 H -0.199 1.199 21 H -0.193 1.193 22 C -0.015 4.015 23 H 0.068 0.932 24 H 0.115 0.885 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.315 -6.941 1.971 17.840 hybrid contribution 0.234 0.895 -0.615 1.111 sum -16.081 -6.046 1.355 17.234 Atomic orbital electron populations 1.22921 0.79463 1.03806 1.00849 1.87831 1.21371 1.28092 1.95613 1.22353 0.91117 0.84824 1.01559 1.22194 0.94302 0.95254 0.99091 0.89228 1.22654 0.92874 1.02264 0.96751 1.22149 0.99192 0.87855 0.93022 1.48537 1.10072 1.33783 1.43360 1.21371 0.85530 0.78638 0.81435 1.90497 1.85330 1.37119 1.35209 1.18796 0.88123 0.98248 0.93693 0.94331 1.21497 1.00969 0.98121 0.96916 1.20849 1.03754 1.27331 1.04550 0.93687 1.25635 0.94566 0.96279 1.00976 1.69971 1.07125 1.39679 1.37752 0.85497 0.78407 0.78594 0.78816 1.20458 1.19886 1.19304 1.22164 0.83069 0.97569 0.98672 0.93166 0.88522 0.93263 0.91940 0.91785 0.88124 0.89556 0.91823 0.91728 0.95822 0.95808 0.90668 0.92292 0.91516 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -8.12 10.67 -148.98 -1.59 -9.71 16 3 C 0.08 1.47 5.39 71.98 0.39 1.85 16 4 C -0.09 -2.09 3.30 -9.40 -0.03 -2.12 16 5 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 6 C -0.11 -2.53 6.38 31.79 0.20 -2.33 16 7 C 0.10 3.30 6.12 86.73 0.53 3.83 16 8 N -0.62 -24.65 3.33 -811.77 -2.70 -27.35 16 9 C 0.54 26.67 6.87 87.66 0.60 27.27 16 10 O -0.60 -32.83 16.28 -3.03 -0.05 -32.88 16 11 C 0.03 1.72 2.22 -12.29 -0.03 1.69 16 12 H 0.04 2.06 7.19 -2.39 -0.02 2.04 16 13 C -0.12 -6.21 8.63 71.98 0.62 -5.59 16 14 C -0.53 -29.40 8.55 25.60 0.22 -29.18 16 15 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 16 C 0.03 1.40 5.30 84.66 0.45 1.85 16 17 N -0.91 -50.60 11.30 21.45 0.24 -50.36 16 18 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 C 0.11 3.32 6.40 86.85 0.56 3.88 16 23 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.07 7.97 -2.39 -0.02 1.06 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.09 1.83 7.91 -2.39 -0.02 1.82 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.06 2.11 7.91 -2.39 -0.02 2.09 16 32 H 0.02 1.27 7.75 -2.38 -0.02 1.25 16 33 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 4.18 5.99 -2.39 -0.01 4.16 16 35 H 0.27 14.05 8.31 -92.70 -0.77 13.28 16 36 H 0.07 2.17 7.99 -2.39 -0.02 2.15 16 37 H 0.07 2.03 8.04 -2.39 -0.02 2.01 16 Total: -1.00 -66.95 304.52 3.72 -63.23 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.03 Total: 9.49 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 4.76 Total: 2.72 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -2.46 Total: -77.71 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -1.64 Total: -42.59 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -66.95 3.72 -63.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597283342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.816 kcal (2) G-P(sol) polarization free energy of solvation -66.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds