Wall clock time and date at job start Mon Mar 30 2020 03:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47257 * 2 1 4 4 C 1.50701 * 109.47086 * 239.99724 * 2 1 3 5 5 H 1.08000 * 120.00290 * 240.00074 * 4 2 1 6 6 C 1.37881 * 119.99633 * 59.73025 * 4 2 1 7 7 N 1.31513 * 120.00194 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47029 * 89.99781 * 8 6 4 10 10 H 1.48497 * 109.47038 * 210.00016 * 8 6 4 11 11 H 1.48502 * 109.46782 * 329.99451 * 8 6 4 12 12 C 1.50705 * 109.47133 * 120.00097 * 2 1 3 13 13 O 1.21282 * 120.00081 * 119.99743 * 12 2 1 14 14 N 1.34775 * 119.99861 * 300.00023 * 12 2 1 15 15 C 1.46505 * 119.99885 * 179.97438 * 14 12 2 16 16 H 1.09000 * 109.47029 * 35.00105 * 15 14 12 17 17 C 1.52997 * 109.47193 * 275.00245 * 15 14 12 18 18 C 1.52998 * 109.47162 * 155.00128 * 15 14 12 19 19 H 1.09001 * 110.80506 * 61.13689 * 18 15 14 20 20 C 1.54813 * 110.90518 * 297.51023 * 18 15 14 21 21 C 1.54095 * 104.18976 * 220.92145 * 20 18 15 22 22 O 1.43744 * 107.29188 * 357.96892 * 21 20 18 23 23 C 1.44381 * 106.97394 * 26.51682 * 22 21 20 24 24 H 1.09005 * 109.47279 * 60.00166 * 1 2 3 25 25 H 1.09002 * 109.47257 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47297 * 299.99704 * 1 2 3 27 27 H 0.97000 * 120.00586 * 180.02562 * 7 6 4 28 28 H 0.96996 * 120.00265 * 0.02562 * 14 12 2 29 29 H 1.09001 * 109.46611 * 295.00811 * 17 15 14 30 30 H 1.08998 * 109.47365 * 55.00280 * 17 15 14 31 31 H 1.08992 * 109.47073 * 175.00746 * 17 15 14 32 32 H 1.09007 * 110.49217 * 339.60201 * 20 18 15 33 33 H 1.09007 * 110.48748 * 102.10802 * 20 18 15 34 34 H 1.09000 * 109.88121 * 117.39286 * 21 20 18 35 35 H 1.09004 * 109.88273 * 238.54875 * 21 20 18 36 36 H 1.09005 * 110.61920 * 201.43721 * 23 22 21 37 37 H 1.09003 * 110.62138 * 78.43849 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6945 -0.2427 -2.4827 7 7 0.9337 0.8232 -2.6034 8 14 2.3177 -1.1228 -4.0080 9 1 1.3432 -2.1693 -4.4085 10 1 2.4763 -0.1446 -5.1139 11 1 3.6293 -1.7542 -3.7139 12 6 2.0323 -0.7105 1.2305 13 8 2.7295 -1.6966 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1946 -0.9410 3.6508 16 1 3.1937 -1.3335 3.4615 17 6 1.2501 -2.0945 3.9943 18 6 2.2462 0.0420 4.8221 19 1 1.2532 0.4332 5.0433 20 6 3.2418 1.1921 4.5346 21 6 3.9690 1.4064 5.8761 22 8 3.3908 0.4955 6.8259 23 6 2.8713 -0.6229 6.0749 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.6957 1.1522 -3.4843 28 1 1.1487 0.5384 2.5436 29 1 0.2740 -1.6951 4.2697 30 1 1.1441 -2.7476 3.1281 31 1 1.6592 -2.6626 4.8297 32 1 3.9499 0.8991 3.7593 33 1 2.7069 2.0950 4.2397 34 1 5.0319 1.1950 5.7595 35 1 3.8282 2.4331 6.2143 36 1 2.1100 -1.1507 6.6494 37 1 3.6760 -1.3002 5.7889 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597295723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:01 Heat of formation + Delta-G solvation = -122.975849 kcal Electronic energy + Delta-G solvation = -17864.493083 eV Core-core repulsion = 15026.220530 eV Total energy + Delta-G solvation = -2838.272553 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.07122 -40.00768 -36.74418 -35.73815 -33.37435 -32.15656 -31.23814 -29.01521 -27.20017 -25.41353 -23.88608 -22.93837 -21.45232 -20.96561 -18.40966 -17.87433 -17.60826 -16.97561 -16.63369 -16.05485 -15.91649 -15.73608 -14.81469 -14.61890 -14.36851 -14.24544 -13.84275 -13.54627 -13.19173 -12.97062 -12.80426 -12.60768 -12.55809 -12.31718 -12.21282 -12.06125 -11.98621 -11.91415 -11.53882 -11.03111 -10.68198 -10.57932 -10.25699 -9.94266 -8.14806 -6.25052 1.40252 1.41049 1.52757 1.97173 2.34210 2.52360 2.95351 3.14637 3.59099 3.68101 3.94004 4.16879 4.22639 4.28532 4.37504 4.47714 4.51120 4.75884 4.77908 4.81489 4.83257 4.86550 4.95175 5.00418 5.05274 5.07573 5.19641 5.32915 5.50981 5.67805 5.77082 5.88177 5.95882 6.23180 6.76483 6.88747 7.41006 7.59097 8.90689 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042101 B = 0.005145 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.906580 B = 5440.475229 C = 5536.396567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.040 0.960 4 C -0.528 4.528 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.524 3.476 13 O -0.588 6.588 14 N -0.719 5.719 15 C 0.151 3.849 16 H 0.060 0.940 17 C -0.159 4.159 18 C -0.118 4.118 19 H 0.108 0.892 20 C -0.153 4.153 21 C 0.046 3.954 22 O -0.396 6.396 23 C 0.056 3.944 24 H 0.070 0.930 25 H 0.021 0.979 26 H 0.052 0.948 27 H 0.264 0.736 28 H 0.408 0.592 29 H 0.074 0.926 30 H 0.030 0.970 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.021 1.844 16.436 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.200 1.200 11 H -0.204 1.204 12 C 0.313 3.687 13 O -0.468 6.468 14 N -0.372 5.372 15 C 0.047 3.953 16 H 0.079 0.921 17 C -0.217 4.217 18 C -0.137 4.137 19 H 0.126 0.874 20 C -0.190 4.190 21 C -0.030 4.030 22 O -0.315 6.315 23 C -0.021 4.021 24 H 0.088 0.912 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.244 0.756 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.133 0.867 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.443 1.293 16.457 16.513 hybrid contribution 0.197 -0.146 -1.426 1.447 sum 0.639 1.146 15.031 15.088 Atomic orbital electron populations 1.21546 0.95089 0.99304 1.01712 1.18807 0.95304 0.95896 0.89799 0.94191 1.21296 1.31427 1.12729 0.91222 0.93479 1.25583 0.95222 0.95759 1.01382 1.69941 1.37026 1.23789 1.24257 0.85618 0.78616 0.78560 0.79230 1.20015 1.19961 1.20447 1.21463 0.78026 0.83614 0.85614 1.90505 1.40064 1.28693 1.87522 1.46046 1.54172 1.32406 1.04581 1.20867 0.98011 0.92628 0.83832 0.92129 1.22168 1.00351 0.97754 1.01419 1.22956 1.01363 0.95181 0.94183 0.87429 1.22993 0.98556 0.99628 0.97857 1.23249 0.97027 0.94910 0.87835 1.88841 1.77717 1.33095 1.31880 1.23648 0.98099 0.89116 0.91213 0.91173 0.96022 0.92897 0.92633 0.75576 0.90698 0.95028 0.89661 0.92013 0.89152 0.92245 0.88351 0.86692 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.86 71.98 0.64 -4.69 16 2 C 0.02 1.15 2.64 -12.29 -0.03 1.12 16 3 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.53 -30.63 8.38 25.60 0.21 -30.42 16 5 H 0.05 2.93 6.75 -2.91 -0.02 2.91 16 6 C 0.02 1.10 5.30 84.66 0.45 1.55 16 7 N -0.91 -51.00 11.30 21.45 0.24 -50.76 16 8 Si 0.95 45.00 29.54 68.60 2.03 47.03 16 9 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 12 C 0.52 23.52 7.11 87.66 0.62 24.14 16 13 O -0.59 -31.05 15.12 -3.04 -0.05 -31.10 16 14 N -0.72 -23.11 4.69 -442.52 -2.07 -25.19 16 15 C 0.15 4.03 1.98 44.99 0.09 4.12 16 16 H 0.06 1.94 7.57 -2.39 -0.02 1.93 16 17 C -0.16 -3.84 9.24 71.98 0.66 -3.18 16 18 C -0.12 -2.31 2.72 -9.49 -0.03 -2.33 16 19 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 20 C -0.15 -3.07 6.33 31.58 0.20 -2.87 16 21 C 0.05 0.86 7.70 72.35 0.56 1.42 16 22 O -0.40 -8.60 11.52 -148.98 -1.72 -10.32 16 23 C 0.06 1.03 6.35 72.66 0.46 1.49 16 24 H 0.07 3.51 6.05 -2.38 -0.01 3.50 16 25 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 1.89 7.56 -2.39 -0.02 1.87 16 27 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 28 H 0.41 10.95 8.02 -92.71 -0.74 10.20 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.61 7.62 -2.39 -0.02 1.59 16 32 H 0.06 1.49 7.86 -2.38 -0.02 1.47 16 33 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.06 1.16 8.04 -2.39 -0.02 1.14 16 Total: -1.00 -67.87 301.15 2.58 -65.29 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.31 Total: 14.69 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 3.84 Total: -9.65 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.83 Total: -75.95 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -1.76 Total: -41.42 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -67.87 2.58 -65.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597295723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.684 kcal (2) G-P(sol) polarization free energy of solvation -67.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds