Wall clock time and date at job start Mon Mar 30 2020 03:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00235 * 2 1 4 4 C 1.52997 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.87906 * 186.01695 * 4 3 2 6 6 C 1.54325 * 110.00883 * 307.11730 * 4 3 2 7 7 C 1.55152 * 102.94273 * 141.68243 * 6 4 3 8 8 C 1.55124 * 101.48825 * 324.32949 * 7 6 4 9 9 N 1.47027 * 109.88138 * 64.99808 * 4 3 2 10 10 C 1.34773 * 125.64753 * 61.45629 * 9 4 3 11 11 O 1.21279 * 120.00003 * 5.16595 * 10 9 4 12 12 C 1.50694 * 119.99921 * 185.17091 * 10 9 4 13 13 H 1.09003 * 109.47336 * 334.91032 * 12 10 9 14 14 C 1.53003 * 109.47491 * 214.90896 * 12 10 9 15 15 C 1.50704 * 109.47441 * 94.90707 * 12 10 9 16 16 H 1.07998 * 119.99713 * 0.02562 * 15 12 10 17 17 C 1.37875 * 119.99983 * 179.97438 * 15 12 10 18 18 N 1.31512 * 120.00372 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 119.99556 * 180.27546 * 17 15 12 20 20 H 1.48503 * 109.46790 * 179.72433 * 19 17 15 21 21 H 1.48494 * 109.47230 * 299.72718 * 19 17 15 22 22 H 1.48504 * 109.47031 * 59.73059 * 19 17 15 23 23 H 1.08999 * 109.47298 * 59.99534 * 1 2 3 24 24 H 1.08992 * 109.47248 * 179.97438 * 1 2 3 25 25 H 1.09009 * 109.46898 * 299.99843 * 1 2 3 26 26 H 1.09000 * 109.47457 * 60.00109 * 3 2 1 27 27 H 1.09001 * 109.47074 * 300.00579 * 3 2 1 28 28 H 1.09001 * 110.71592 * 260.04235 * 6 4 3 29 29 H 1.08993 * 110.72319 * 23.31485 * 6 4 3 30 30 H 1.09003 * 111.00733 * 82.57353 * 7 6 4 31 31 H 1.09002 * 111.00519 * 206.38141 * 7 6 4 32 32 H 1.08999 * 110.49925 * 278.45718 * 8 7 6 33 33 H 1.09001 * 110.34912 * 156.05942 * 8 7 6 34 34 H 1.08993 * 109.47308 * 174.89136 * 14 12 10 35 35 H 1.09005 * 109.46613 * 294.89470 * 14 12 10 36 36 H 1.09001 * 109.46782 * 54.88965 * 14 12 10 37 37 H 0.97002 * 120.00056 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9855 2.1715 0.1068 6 6 3.9933 0.2704 1.1553 7 6 5.1676 -0.5244 0.5256 8 6 4.6726 -0.7026 -0.9337 9 7 3.9873 0.5628 -1.2540 10 6 3.8007 1.0638 -2.4912 11 8 3.2995 2.1591 -2.6327 12 6 4.2149 0.2630 -3.6987 13 1 5.0065 -0.4324 -3.4195 14 6 4.7272 1.2088 -4.7868 15 6 3.0300 -0.5082 -4.2207 16 1 2.0727 -0.4263 -3.7275 17 6 3.1679 -1.3175 -5.3284 18 7 4.3335 -1.4169 -5.9292 19 14 1.6972 -2.2674 -5.9799 20 1 2.1040 -3.0519 -7.1734 21 1 1.1980 -3.1892 -4.9282 22 1 0.6207 -1.3161 -6.3561 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.6887 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 4.3391 0.8633 2.0020 29 1 3.1901 -0.4021 1.4565 30 1 6.0924 0.0515 0.5606 31 1 5.2926 -1.4903 1.0152 32 1 3.9766 -1.5386 -1.0014 33 1 5.5179 -0.8564 -1.6045 34 1 5.1108 0.6257 -5.6240 35 1 3.9105 1.8439 -5.1302 36 1 5.5252 1.8308 -4.3813 37 1 4.4306 -1.9866 -6.7083 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597345293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:51 Heat of formation + Delta-G solvation = -87.558118 kcal Electronic energy + Delta-G solvation = -18543.476001 eV Core-core repulsion = 15706.739276 eV Total energy + Delta-G solvation = -2836.736725 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.58712 -37.45357 -36.36119 -33.70418 -31.18428 -30.49140 -29.81383 -26.46551 -25.15297 -24.72453 -23.24076 -21.53792 -20.14485 -18.12844 -16.69018 -16.43322 -15.91074 -15.54823 -15.27426 -14.86781 -14.29895 -13.64764 -13.42271 -13.05290 -12.66710 -12.60935 -12.34787 -11.80788 -11.65810 -11.48854 -11.27751 -10.93813 -10.92099 -10.76837 -10.51272 -10.48705 -10.42371 -10.18226 -10.04369 -9.39287 -8.96564 -8.54834 -8.27945 -7.88311 -6.04587 -4.10232 3.32450 3.35810 3.38876 3.73350 3.84138 4.08522 4.45221 4.87643 4.89668 5.14753 5.27643 5.38391 5.46684 5.57492 5.60015 5.63311 5.81186 5.86830 5.91848 6.02388 6.12623 6.22233 6.22925 6.36851 6.56955 6.86336 7.04293 7.05214 7.20687 7.42907 7.62453 7.80956 8.00932 8.24755 8.45824 8.89263 9.29306 9.53948 11.02273 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.008769 C = 0.007650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.022597 B = 3192.241113 C = 3659.027109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.050 3.950 4 C 0.138 3.862 5 H 0.079 0.921 6 C -0.125 4.125 7 C -0.133 4.133 8 C 0.112 3.888 9 N -0.615 5.615 10 C 0.545 3.455 11 O -0.567 6.567 12 C 0.036 3.964 13 H 0.044 0.956 14 C -0.122 4.122 15 C -0.501 4.501 16 H 0.056 0.944 17 C 0.066 3.934 18 N -0.889 5.889 19 Si 0.898 3.102 20 H -0.286 1.286 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.040 0.960 24 H 0.082 0.918 25 H 0.034 0.966 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.008 0.992 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 0.653 13.281 13.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C -0.028 4.028 4 C 0.034 3.966 5 H 0.097 0.903 6 C -0.163 4.163 7 C -0.171 4.171 8 C -0.011 4.011 9 N -0.350 5.350 10 C 0.339 3.661 11 O -0.446 6.446 12 C 0.015 3.985 13 H 0.061 0.939 14 C -0.180 4.180 15 C -0.540 4.540 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.212 1.212 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.058 0.942 24 H 0.101 0.899 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.027 0.973 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.897 1.018 12.937 13.008 hybrid contribution -1.090 -0.310 -0.351 1.186 sum -1.986 0.708 12.586 12.762 Atomic orbital electron populations 1.22671 0.81781 1.02337 0.99482 1.87891 1.18946 1.27551 1.95271 1.22881 0.94264 0.85067 1.00560 1.21507 0.91956 0.97399 0.85741 0.90309 1.22604 0.98726 0.98591 0.96331 1.22815 0.97813 1.00561 0.95950 1.22212 0.96780 0.87399 0.94734 1.48636 1.58376 1.23129 1.04889 1.21702 0.75802 0.85583 0.83056 1.90505 1.45926 1.22162 1.85982 1.18876 0.98010 0.93495 0.88157 0.93857 1.21610 0.98030 0.97695 1.00682 1.20683 0.94981 1.25582 1.12705 0.92550 1.24885 0.96047 0.96452 0.96230 1.69883 1.22952 1.38823 1.21038 0.86550 0.82746 0.79844 0.78272 1.21171 1.20155 1.20202 0.94166 0.89941 0.94788 0.93526 0.91791 0.91023 0.89621 0.91152 0.90329 0.91133 0.90516 0.89657 0.94230 0.97329 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.38 -6.53 9.47 -35.23 -0.33 -6.87 16 3 C 0.05 0.83 5.60 37.16 0.21 1.04 16 4 C 0.14 2.29 3.23 -66.95 -0.22 2.07 16 5 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 6 C -0.12 -1.59 6.36 -24.90 -0.16 -1.75 16 7 C -0.13 -1.69 7.10 -24.47 -0.17 -1.86 16 8 C 0.11 1.92 6.56 -2.41 -0.02 1.90 16 9 N -0.62 -12.35 3.02 -162.88 -0.49 -12.84 16 10 C 0.55 13.32 6.50 -10.99 -0.07 13.25 16 11 O -0.57 -15.09 15.54 5.56 0.09 -15.00 16 12 C 0.04 0.93 2.34 -92.92 -0.22 0.71 16 13 H 0.04 1.14 6.36 -51.93 -0.33 0.81 16 14 C -0.12 -3.17 8.47 37.16 0.31 -2.85 16 15 C -0.50 -14.15 8.55 -34.44 -0.29 -14.44 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 17 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 18 N -0.89 -25.07 11.38 55.43 0.63 -24.44 16 19 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.27 6.88 -51.93 -0.36 0.91 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 1.13 6.97 -51.93 -0.36 0.77 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.34 6.86 -51.93 -0.36 0.98 16 34 H 0.08 2.31 6.22 -51.93 -0.32 1.98 16 35 H 0.04 1.05 8.02 -51.93 -0.42 0.64 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 300.05 15.07 4.52 4.52 Total: -1.00 -31.69 300.05 -6.13 -37.82 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.91 Total: -1.12 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 0.39 Total: 1.38 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.14 Total: -37.28 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.25 Total: -21.87 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.69 -6.13 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597345293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.740 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds