Wall clock time and date at job start Mon Mar 30 2020 03:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47103 * 2 1 4 4 C 1.50701 * 109.46923 * 240.00136 * 2 1 3 5 5 H 1.07997 * 120.00432 * 335.73638 * 4 2 1 6 6 C 1.37884 * 119.99870 * 155.73635 * 4 2 1 7 7 N 1.31514 * 119.99785 * 357.56782 * 6 4 2 8 8 Si 1.86796 * 119.99952 * 177.57485 * 6 4 2 9 9 H 1.48498 * 109.47224 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46999 * 240.00038 * 8 6 4 11 11 H 1.48495 * 109.47402 * 120.00136 * 8 6 4 12 12 C 1.50699 * 109.47362 * 120.00234 * 2 1 3 13 13 O 1.21274 * 120.00126 * 119.99991 * 12 2 1 14 14 N 1.34785 * 119.99765 * 299.99955 * 12 2 1 15 15 C 1.46502 * 119.99926 * 359.97438 * 14 12 2 16 16 C 1.46497 * 119.99774 * 180.02562 * 14 12 2 17 17 C 1.52992 * 109.47339 * 89.99848 * 16 14 12 18 18 H 1.09002 * 110.80787 * 308.62587 * 17 16 14 19 19 C 1.54813 * 110.90950 * 184.99730 * 17 16 14 20 20 C 1.54095 * 104.19042 * 220.92387 * 19 17 16 21 21 O 1.43746 * 107.29403 * 357.96822 * 20 19 17 22 22 C 1.44378 * 106.97217 * 26.51390 * 21 20 19 23 23 H 1.08997 * 109.47328 * 187.21757 * 1 2 3 24 24 H 1.09002 * 109.47170 * 307.21587 * 1 2 3 25 25 H 1.08997 * 109.47484 * 67.21420 * 1 2 3 26 26 H 0.96997 * 120.00236 * 7.19419 * 7 6 4 27 27 H 1.09000 * 109.46636 * 90.00119 * 15 14 12 28 28 H 1.08995 * 109.46988 * 209.99919 * 15 14 12 29 29 H 1.08997 * 109.47163 * 330.00185 * 15 14 12 30 30 H 1.09005 * 109.46776 * 210.00349 * 16 14 12 31 31 H 1.09001 * 109.47016 * 329.99503 * 16 14 12 32 32 H 1.09007 * 110.48336 * 339.60055 * 19 17 16 33 33 H 1.09000 * 110.48938 * 102.10885 * 19 17 16 34 34 H 1.09000 * 109.87761 * 117.39454 * 20 19 17 35 35 H 1.08999 * 109.88003 * 238.54570 * 20 19 17 36 36 H 1.09004 * 110.61567 * 201.43324 * 22 21 20 37 37 H 1.09003 * 110.61546 * 78.44226 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 1.4084 -1.4399 -1.7254 6 6 3.2884 -0.4290 -1.7245 7 7 4.0293 0.4935 -1.1503 8 14 3.9378 -1.3579 -3.2093 9 1 2.9183 -2.3364 -3.6658 10 1 5.1824 -2.0776 -2.8375 11 1 4.2292 -0.3987 -4.3048 12 6 2.0323 -0.7104 1.2304 13 8 2.7296 -1.6964 1.1191 14 7 1.7067 -0.2500 2.4546 15 6 0.8649 0.9415 2.5890 16 6 2.1956 -0.9403 3.6507 17 6 3.5432 -0.3473 4.0668 18 1 4.2326 -0.3228 3.2228 19 6 4.1504 -1.1347 5.2534 20 6 4.7377 -0.0437 6.1696 21 8 4.5202 1.2210 5.5218 22 6 3.3613 1.0668 4.6747 23 1 -0.3634 -1.0195 0.1291 24 1 -0.3633 0.6216 0.8184 25 1 -0.3634 0.3980 -0.9474 26 1 3.7382 0.9020 -0.3201 27 1 -0.1831 0.6439 2.6222 28 1 1.1228 1.4666 3.5086 29 1 1.0288 1.6002 1.7362 30 1 1.4776 -0.8151 4.4613 31 1 2.3170 -2.0015 3.4336 32 1 3.3751 -1.6951 5.7760 33 1 4.9352 -1.8057 4.9043 34 1 4.2310 -0.0578 7.1346 35 1 5.8060 -0.2107 6.3071 36 1 3.3555 1.8239 3.8905 37 1 2.4457 1.1163 5.2641 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597355159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:29 Heat of formation + Delta-G solvation = -111.948447 kcal Electronic energy + Delta-G solvation = -18343.195818 eV Core-core repulsion = 15505.401449 eV Total energy + Delta-G solvation = -2837.794369 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.13304 -40.06030 -36.64336 -35.91995 -33.91463 -32.45849 -30.34776 -28.28138 -26.74841 -26.55540 -24.02645 -23.39726 -21.73691 -20.37969 -18.69976 -17.81626 -17.67567 -16.98610 -16.63741 -16.10172 -16.00383 -15.69983 -15.17818 -14.77798 -14.53282 -13.95662 -13.84537 -13.73097 -13.43216 -12.99218 -12.97603 -12.76258 -12.64680 -12.38700 -12.28185 -11.99506 -11.93357 -11.73536 -11.59586 -10.88499 -10.68706 -10.53794 -10.24994 -9.52998 -8.63140 -6.34449 1.47150 1.58351 1.73333 1.97568 2.23326 2.55582 2.94393 3.22731 3.55849 3.68898 3.88395 4.06455 4.16748 4.22790 4.31737 4.36242 4.45675 4.52774 4.62092 4.66310 4.69841 4.73384 4.79917 4.80404 4.89205 4.95365 5.03553 5.13663 5.24007 5.38856 5.77112 5.85800 5.91675 6.14208 6.47394 6.72639 7.44016 7.58265 8.75751 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027772 B = 0.007006 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.974682 B = 3995.870721 C = 4470.165245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.000 4.000 3 H 0.042 0.958 4 C -0.582 4.582 5 H 0.041 0.959 6 C -0.025 4.025 7 N -0.933 5.933 8 Si 1.114 2.886 9 H -0.272 1.272 10 H -0.292 1.292 11 H -0.269 1.269 12 C 0.504 3.496 13 O -0.582 6.582 14 N -0.628 5.628 15 C 0.073 3.927 16 C 0.128 3.872 17 C -0.138 4.138 18 H 0.035 0.965 19 C -0.144 4.144 20 C 0.046 3.954 21 O -0.407 6.407 22 C 0.060 3.940 23 H 0.035 0.965 24 H 0.083 0.917 25 H 0.055 0.945 26 H 0.253 0.747 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 1.159 14.846 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.022 4.022 3 H 0.060 0.940 4 C -0.620 4.620 5 H 0.060 0.940 6 C -0.223 4.223 7 N -0.570 5.570 8 Si 0.937 3.063 9 H -0.197 1.197 10 H -0.219 1.219 11 H -0.194 1.194 12 C 0.294 3.706 13 O -0.460 6.460 14 N -0.362 5.362 15 C -0.069 4.069 16 C 0.006 3.994 17 C -0.158 4.158 18 H 0.054 0.946 19 C -0.182 4.182 20 C -0.030 4.030 21 O -0.326 6.326 22 C -0.016 4.016 23 H 0.055 0.945 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.715 0.760 13.751 14.557 hybrid contribution -0.861 -0.233 0.771 1.179 sum -5.576 0.528 14.522 15.565 Atomic orbital electron populations 1.21788 0.93058 1.00850 1.02401 1.19118 0.96057 0.96222 0.90754 0.94015 1.22031 1.02798 1.25569 1.11583 0.94028 1.27109 0.94110 0.95733 1.05347 1.70869 1.41507 1.25654 1.19004 0.82987 0.75408 0.75223 0.72721 1.19713 1.21879 1.19444 1.22405 0.78381 0.84105 0.85660 1.90491 1.39262 1.29115 1.87154 1.48181 1.52460 1.30454 1.05130 1.22157 0.94867 0.86377 1.03477 1.21409 0.94082 0.96394 0.87563 1.23050 0.97843 0.97095 0.97854 0.94622 1.22928 1.01541 0.98537 0.95166 1.23317 1.01925 0.81802 0.95995 1.88833 1.48569 1.33517 1.61728 1.23682 0.89474 0.95584 0.92840 0.94546 0.89824 0.92542 0.93694 0.90313 0.88956 0.91766 0.86542 0.92353 0.87731 0.91289 0.89640 0.89586 0.90366 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.76 8.74 71.98 0.63 -4.13 16 2 C 0.00 0.00 1.50 -12.29 -0.02 -0.02 16 3 H 0.04 2.19 6.09 -2.39 -0.01 2.17 16 4 C -0.58 -34.08 7.55 25.60 0.19 -33.88 16 5 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 6 C -0.02 -1.48 5.46 84.66 0.46 -1.02 16 7 N -0.93 -59.29 13.60 21.45 0.29 -59.00 16 8 Si 1.11 54.26 29.90 68.60 2.05 56.31 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 C 0.50 24.55 6.97 87.66 0.61 25.16 16 13 O -0.58 -34.08 15.61 -3.01 -0.05 -34.13 16 14 N -0.63 -22.17 2.84 -846.78 -2.40 -24.58 16 15 C 0.07 1.84 8.59 127.77 1.10 2.93 16 16 C 0.13 3.79 4.80 86.38 0.41 4.20 16 17 C -0.14 -4.16 3.34 -9.50 -0.03 -4.20 16 18 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 19 C -0.14 -3.29 6.60 31.58 0.21 -3.09 16 20 C 0.05 0.98 7.70 72.35 0.56 1.54 16 21 O -0.41 -11.57 11.52 -148.98 -1.72 -13.29 16 22 C 0.06 1.55 5.75 72.66 0.42 1.97 16 23 H 0.04 1.41 8.13 -2.39 -0.02 1.39 16 24 H 0.08 2.46 4.76 -2.39 -0.01 2.45 16 25 H 0.06 2.13 8.13 -2.39 -0.02 2.11 16 26 H 0.25 16.13 6.68 -92.71 -0.62 15.51 16 27 H 0.08 1.60 7.11 -2.39 -0.02 1.58 16 28 H 0.09 1.71 6.37 -2.39 -0.02 1.69 16 29 H 0.06 1.81 5.93 -2.39 -0.01 1.79 16 30 H 0.12 2.32 7.91 -2.38 -0.02 2.30 16 31 H 0.06 2.02 7.42 -2.39 -0.02 2.00 16 32 H 0.10 1.79 7.86 -2.38 -0.02 1.78 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 2.21 8.01 -2.39 -0.02 2.19 16 37 H 0.09 1.75 7.63 -2.39 -0.02 1.73 16 Total: -1.00 -78.61 294.20 3.91 -74.69 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.20 Total: 10.51 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 4.54 Total: -10.52 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -2.11 Total: -83.58 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -1.76 Total: -47.41 kcal Atomic # 14 Polarization: 54.26 SS G_CDS: 2.05 Total: 56.31 kcal Total: -78.61 3.91 -74.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597355159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.255 kcal (2) G-P(sol) polarization free energy of solvation -78.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds