Wall clock time and date at job start Mon Mar 30 2020 03:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47128 * 2 1 4 4 C 1.50699 * 109.47355 * 120.00041 * 2 1 3 5 5 H 1.08000 * 119.99653 * 119.99649 * 4 2 1 6 6 C 1.37875 * 119.99827 * 300.00142 * 4 2 1 7 7 N 1.31517 * 119.99737 * 179.97438 * 6 4 2 8 8 Si 1.86792 * 120.00510 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.47471 * 89.99862 * 8 6 4 10 10 H 1.48499 * 109.47570 * 210.00033 * 8 6 4 11 11 H 1.48501 * 109.46821 * 329.99966 * 8 6 4 12 12 C 1.50695 * 109.46887 * 240.00347 * 2 1 3 13 13 O 1.21287 * 120.00160 * 239.99502 * 12 2 1 14 14 N 1.34773 * 120.00338 * 59.99833 * 12 2 1 15 15 C 1.46496 * 120.00339 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.47495 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.86448 * 58.99556 * 16 15 14 18 18 C 1.54098 * 109.88065 * 179.97438 * 16 15 14 19 19 C 1.54813 * 104.30472 * 121.39028 * 18 16 15 20 20 C 1.55353 * 101.93011 * 20.91817 * 19 18 16 21 21 O 1.43743 * 109.87776 * 297.83814 * 16 15 14 22 22 H 1.08997 * 109.47611 * 59.99904 * 1 2 3 23 23 H 1.08999 * 109.47128 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46732 * 299.99660 * 1 2 3 25 25 H 0.97003 * 120.00060 * 179.97438 * 7 6 4 26 26 H 0.97000 * 119.99683 * 0.02562 * 14 12 2 27 27 H 1.09004 * 109.47118 * 60.00382 * 15 14 12 28 28 H 1.09000 * 109.47163 * 300.00250 * 15 14 12 29 29 H 1.09003 * 109.46955 * 181.00823 * 17 16 15 30 30 H 1.08997 * 109.47605 * 301.00551 * 17 16 15 31 31 H 1.08995 * 109.47560 * 61.01007 * 17 16 15 32 32 H 1.09002 * 110.48969 * 240.13364 * 18 16 15 33 33 H 1.09002 * 110.48612 * 2.65031 * 18 16 15 34 34 H 1.09001 * 110.90927 * 139.14314 * 19 18 16 35 35 H 1.08998 * 110.91012 * 262.75131 * 19 18 16 36 36 H 1.09002 * 110.58518 * 204.45470 * 20 19 18 37 37 H 1.09003 * 110.76958 * 81.52881 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8019 0.8745 2.6994 10 1 0.9772 1.9953 3.9071 11 1 0.8492 2.1773 1.4924 12 6 2.0323 -0.7103 -1.2305 13 8 2.7296 -1.6964 -1.1193 14 7 1.7066 -0.2499 -2.4546 15 6 2.1954 -0.9401 -3.6507 16 6 1.6847 -0.2193 -4.9000 17 6 2.1679 1.2324 -4.8967 18 6 2.1942 -0.9376 -6.1645 19 6 0.9052 -1.3333 -6.9252 20 6 -0.1372 -0.3512 -6.3232 21 8 0.2483 -0.2593 -4.9345 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.9033 -0.5281 4.4375 26 1 1.1493 0.5390 -2.5435 27 1 1.8324 -1.9679 -3.6510 28 1 3.2854 -0.9397 -3.6506 29 1 1.7859 1.7446 -5.7798 30 1 1.8045 1.7344 -4.0000 31 1 3.2576 1.2527 -4.9079 32 1 2.8015 -0.2630 -6.7681 33 1 2.7657 -1.8257 -5.8947 34 1 1.0208 -1.1717 -7.9969 35 1 0.6322 -2.3677 -6.7164 36 1 -1.1445 -0.7573 -6.4159 37 1 -0.0722 0.6245 -6.8047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597366006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:00 Heat of formation + Delta-G solvation = -88.271903 kcal Electronic energy + Delta-G solvation = -17944.639561 eV Core-core repulsion = 15107.871884 eV Total energy + Delta-G solvation = -2836.767677 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.15384 -38.59246 -34.51585 -33.73278 -32.45853 -31.48288 -30.70364 -27.13731 -25.53918 -25.05105 -22.55960 -21.82861 -20.23497 -19.23716 -16.84933 -16.67028 -16.21010 -15.44605 -15.22002 -15.12280 -14.27722 -14.18494 -14.03099 -13.24936 -13.10654 -12.78030 -12.64698 -12.23650 -12.17041 -11.95990 -11.84915 -11.48324 -11.30606 -11.07456 -10.90307 -10.85688 -10.52111 -10.21804 -9.80351 -9.56968 -9.02661 -8.61941 -8.52092 -8.41971 -5.99226 -3.98826 3.28654 3.36175 3.40907 3.55366 3.70503 3.96134 4.30957 4.43617 4.57176 4.58209 4.83577 4.91700 5.05599 5.30363 5.32492 5.40024 5.49554 5.55580 5.63989 5.68937 5.77804 5.86244 5.91384 5.99396 6.14033 6.22179 6.42769 6.54483 6.77736 6.81199 7.08188 7.25155 7.62368 8.23673 8.62889 9.17452 9.23683 9.60392 11.13872 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.043538 B = 0.005533 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.963238 B = 5059.683929 C = 5328.066553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.005 4.005 3 H 0.051 0.949 4 C -0.503 4.503 5 H 0.093 0.907 6 C 0.069 3.931 7 N -0.898 5.898 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.527 3.473 13 O -0.535 6.535 14 N -0.741 5.741 15 C 0.132 3.868 16 C 0.090 3.910 17 C -0.163 4.163 18 C -0.144 4.144 19 C -0.154 4.154 20 C 0.045 3.955 21 O -0.361 6.361 22 H 0.034 0.966 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.264 0.736 26 H 0.397 0.603 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 4.588 -21.987 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.069 0.931 4 C -0.541 4.541 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.536 5.536 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.316 3.684 13 O -0.410 6.410 14 N -0.396 5.396 15 C 0.007 3.993 16 C 0.050 3.950 17 C -0.221 4.221 18 C -0.182 4.182 19 C -0.192 4.192 20 C -0.032 4.032 21 O -0.280 6.280 22 H 0.053 0.947 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.232 0.768 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.201 3.852 -21.499 22.075 hybrid contribution -0.807 1.199 -0.071 1.447 sum -4.008 5.051 -21.570 22.513 Atomic orbital electron populations 1.22099 0.97301 1.01518 0.99178 1.19302 0.93235 0.97483 0.92659 0.93139 1.20958 1.31887 1.14021 0.87261 0.88907 1.24982 0.95865 0.96596 0.95766 1.69890 1.45670 1.40234 0.97821 0.86901 0.80731 0.83862 0.76961 1.20549 1.22395 1.19275 1.21250 0.78900 0.84288 0.83989 1.90572 1.37499 1.26370 1.86593 1.46164 1.55372 1.32752 1.05289 1.21349 0.98623 0.96333 0.82951 1.22398 0.81836 0.95469 0.95300 1.22247 1.01731 0.95427 1.02674 1.22966 0.98342 1.01371 0.95569 1.23180 0.95087 1.00731 1.00209 1.23599 0.98934 0.98124 0.82519 1.88988 1.19756 1.94787 1.24442 0.94714 0.92406 0.93421 0.92644 0.76806 0.91481 0.90906 0.92285 0.91445 0.91215 0.90237 0.89926 0.90308 0.90351 0.89092 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.57 37.16 0.32 -2.80 16 2 C -0.01 -0.13 2.23 -92.93 -0.21 -0.33 16 3 H 0.05 1.19 7.20 -51.93 -0.37 0.81 16 4 C -0.50 -14.97 8.96 -34.44 -0.31 -15.28 16 5 H 0.09 3.14 7.00 -52.49 -0.37 2.77 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -28.30 13.96 55.43 0.77 -27.52 16 8 Si 0.89 21.88 24.37 -169.99 -4.14 17.74 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 11 H -0.27 -6.17 6.53 56.52 0.37 -5.80 16 12 C 0.53 12.09 7.15 -10.99 -0.08 12.01 16 13 O -0.54 -14.35 15.46 5.55 0.09 -14.26 16 14 N -0.74 -13.01 5.07 -60.29 -0.31 -13.32 16 15 C 0.13 1.97 4.62 -4.04 -0.02 1.95 16 16 C 0.09 1.02 0.82 -90.05 -0.07 0.95 16 17 C -0.16 -1.65 8.44 37.16 0.31 -1.33 16 18 C -0.14 -1.27 6.26 -25.20 -0.16 -1.42 16 19 C -0.15 -1.20 7.18 -24.53 -0.18 -1.37 16 20 C 0.04 0.40 7.68 38.41 0.30 0.70 16 21 O -0.36 -4.55 10.73 -35.23 -0.38 -4.92 16 22 H 0.03 0.62 7.56 -51.93 -0.39 0.22 16 23 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 24 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.40 6.21 6.63 -40.82 -0.27 5.94 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.74 6.81 -51.93 -0.35 0.39 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.58 7.69 -51.93 -0.40 0.18 16 33 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 292.89 15.07 4.41 4.41 Total: -1.00 -34.47 292.89 -5.46 -39.93 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.71 Total: 2.93 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.19 Total: -4.98 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.47 Total: -40.84 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.29 Total: -19.19 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.74 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.47 -5.46 -39.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597366006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.343 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds