Wall clock time and date at job start Mon Mar 30 2020 03:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47128 * 2 1 4 4 C 1.50699 * 109.47355 * 120.00041 * 2 1 3 5 5 H 1.08000 * 119.99653 * 119.99649 * 4 2 1 6 6 C 1.37875 * 119.99827 * 300.00142 * 4 2 1 7 7 N 1.31517 * 119.99737 * 179.97438 * 6 4 2 8 8 Si 1.86792 * 120.00510 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.47471 * 89.99862 * 8 6 4 10 10 H 1.48499 * 109.47570 * 210.00033 * 8 6 4 11 11 H 1.48501 * 109.46821 * 329.99966 * 8 6 4 12 12 C 1.50695 * 109.46887 * 240.00347 * 2 1 3 13 13 O 1.21287 * 120.00160 * 239.99502 * 12 2 1 14 14 N 1.34773 * 120.00338 * 59.99833 * 12 2 1 15 15 C 1.46496 * 120.00339 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.47495 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.86448 * 58.99556 * 16 15 14 18 18 C 1.54098 * 109.88065 * 179.97438 * 16 15 14 19 19 C 1.54813 * 104.30472 * 121.39028 * 18 16 15 20 20 C 1.55353 * 101.93011 * 20.91817 * 19 18 16 21 21 O 1.43743 * 109.87776 * 297.83814 * 16 15 14 22 22 H 1.08997 * 109.47611 * 59.99904 * 1 2 3 23 23 H 1.08999 * 109.47128 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46732 * 299.99660 * 1 2 3 25 25 H 0.97003 * 120.00060 * 179.97438 * 7 6 4 26 26 H 0.97000 * 119.99683 * 0.02562 * 14 12 2 27 27 H 1.09004 * 109.47118 * 60.00382 * 15 14 12 28 28 H 1.09000 * 109.47163 * 300.00250 * 15 14 12 29 29 H 1.09003 * 109.46955 * 181.00823 * 17 16 15 30 30 H 1.08997 * 109.47605 * 301.00551 * 17 16 15 31 31 H 1.08995 * 109.47560 * 61.01007 * 17 16 15 32 32 H 1.09002 * 110.48969 * 240.13364 * 18 16 15 33 33 H 1.09002 * 110.48612 * 2.65031 * 18 16 15 34 34 H 1.09001 * 110.90927 * 139.14314 * 19 18 16 35 35 H 1.08998 * 110.91012 * 262.75131 * 19 18 16 36 36 H 1.09002 * 110.58518 * 204.45470 * 20 19 18 37 37 H 1.09003 * 110.76958 * 81.52881 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8019 0.8745 2.6994 10 1 0.9772 1.9953 3.9071 11 1 0.8492 2.1773 1.4924 12 6 2.0323 -0.7103 -1.2305 13 8 2.7296 -1.6964 -1.1193 14 7 1.7066 -0.2499 -2.4546 15 6 2.1954 -0.9401 -3.6507 16 6 1.6847 -0.2193 -4.9000 17 6 2.1679 1.2324 -4.8967 18 6 2.1942 -0.9376 -6.1645 19 6 0.9052 -1.3333 -6.9252 20 6 -0.1372 -0.3512 -6.3232 21 8 0.2483 -0.2593 -4.9345 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.9033 -0.5281 4.4375 26 1 1.1493 0.5390 -2.5435 27 1 1.8324 -1.9679 -3.6510 28 1 3.2854 -0.9397 -3.6506 29 1 1.7859 1.7446 -5.7798 30 1 1.8045 1.7344 -4.0000 31 1 3.2576 1.2527 -4.9079 32 1 2.8015 -0.2630 -6.7681 33 1 2.7657 -1.8257 -5.8947 34 1 1.0208 -1.1717 -7.9969 35 1 0.6322 -2.3677 -6.7164 36 1 -1.1445 -0.7573 -6.4159 37 1 -0.0722 0.6245 -6.8047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597366006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:59 Heat of formation + Delta-G solvation = -115.029352 kcal Electronic energy + Delta-G solvation = -17945.799851 eV Core-core repulsion = 15107.871884 eV Total energy + Delta-G solvation = -2837.927967 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.18576 -40.18395 -35.94393 -35.76304 -33.58398 -33.09466 -31.92013 -28.09800 -27.12355 -26.60204 -24.25293 -22.62787 -21.26281 -20.84746 -18.81495 -18.15995 -17.27795 -16.84777 -16.65343 -16.39739 -15.80104 -15.71803 -14.91035 -14.73233 -14.69613 -14.12545 -14.00248 -13.60909 -13.42243 -13.33589 -12.82052 -12.70155 -12.59102 -12.55315 -12.15415 -11.99378 -11.85455 -11.55549 -11.46615 -11.22360 -10.77412 -10.62253 -10.45696 -10.00010 -8.26761 -6.34530 1.33890 1.40066 1.51510 1.85945 2.33767 2.36405 2.89345 3.06683 3.53940 3.76162 3.84535 4.07976 4.13500 4.16394 4.40692 4.42288 4.54610 4.59460 4.64312 4.70160 4.80907 4.83920 4.87464 4.96775 4.97446 5.01198 5.10787 5.23263 5.30956 5.43301 5.52501 5.54463 6.03242 6.27151 6.67480 6.85111 7.26716 7.49624 8.91065 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.043538 B = 0.005533 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.963238 B = 5059.683929 C = 5328.066553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 H 0.070 0.930 4 C -0.521 4.521 5 H 0.029 0.971 6 C 0.006 3.994 7 N -0.953 5.953 8 Si 0.960 3.040 9 H -0.261 1.261 10 H -0.297 1.297 11 H -0.231 1.231 12 C 0.525 3.475 13 O -0.588 6.588 14 N -0.716 5.716 15 C 0.127 3.873 16 C 0.094 3.906 17 C -0.162 4.162 18 C -0.144 4.144 19 C -0.150 4.150 20 C 0.038 3.962 21 O -0.389 6.389 22 H 0.081 0.919 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.267 0.733 26 H 0.411 0.589 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.347 7.391 -24.667 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.030 4.030 3 H 0.088 0.912 4 C -0.559 4.559 5 H 0.047 0.953 6 C -0.190 4.190 7 N -0.593 5.593 8 Si 0.785 3.215 9 H -0.187 1.187 10 H -0.225 1.225 11 H -0.154 1.154 12 C 0.314 3.686 13 O -0.467 6.467 14 N -0.370 5.370 15 C 0.003 3.997 16 C 0.055 3.945 17 C -0.219 4.219 18 C -0.182 4.182 19 C -0.187 4.187 20 C -0.038 4.038 21 O -0.309 6.309 22 H 0.099 0.901 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.248 0.752 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.976 6.683 -24.254 25.645 hybrid contribution -0.200 0.216 0.713 0.771 sum -5.176 6.899 -23.541 25.072 Atomic orbital electron populations 1.21998 0.94635 1.01481 1.01372 1.19260 0.95273 0.97531 0.90972 0.91240 1.21091 1.31639 1.12843 0.90366 0.95261 1.26036 0.97435 1.00774 0.94760 1.70080 1.47684 1.42812 0.98714 0.85690 0.78728 0.79012 0.78063 1.18715 1.22516 1.15427 1.21080 0.78536 0.83650 0.85382 1.90557 1.40029 1.28683 1.87446 1.45887 1.54083 1.32548 1.04463 1.21561 0.98752 0.95872 0.83526 1.22365 0.81814 0.96197 0.94151 1.22248 1.02222 0.94248 1.03206 1.22999 0.99069 1.01444 0.94663 1.23183 0.93980 1.00038 1.01522 1.23834 0.99557 0.99424 0.80937 1.88942 1.20083 1.94978 1.26910 0.90064 0.93755 0.93434 0.92367 0.75171 0.93279 0.90957 0.90198 0.92417 0.90536 0.87999 0.90471 0.87758 0.91139 0.88417 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 8.57 71.98 0.62 -4.98 16 2 C -0.01 -0.42 2.23 -12.29 -0.03 -0.45 16 3 H 0.07 3.08 7.20 -2.39 -0.02 3.07 16 4 C -0.52 -32.18 8.96 25.60 0.23 -31.95 16 5 H 0.03 2.12 7.00 -2.91 -0.02 2.10 16 6 C 0.01 0.38 5.45 84.65 0.46 0.84 16 7 N -0.95 -62.35 13.96 21.45 0.30 -62.05 16 8 Si 0.96 44.18 24.37 68.60 1.67 45.85 16 9 H -0.26 -11.29 6.87 99.48 0.68 -10.61 16 10 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.23 -9.24 6.53 99.48 0.65 -8.59 16 12 C 0.53 24.30 7.15 87.66 0.63 24.93 16 13 O -0.59 -33.06 15.46 -3.05 -0.05 -33.11 16 14 N -0.72 -24.32 5.07 -463.06 -2.35 -26.67 16 15 C 0.13 3.71 4.62 86.38 0.40 4.11 16 16 C 0.09 1.94 0.82 -10.42 -0.01 1.93 16 17 C -0.16 -2.74 8.44 71.98 0.61 -2.13 16 18 C -0.14 -2.14 6.26 31.58 0.20 -1.94 16 19 C -0.15 -1.88 7.18 32.02 0.23 -1.65 16 20 C 0.04 0.56 7.68 72.79 0.56 1.12 16 21 O -0.39 -8.84 10.73 -148.98 -1.60 -10.44 16 22 H 0.08 2.54 7.56 -2.39 -0.02 2.52 16 23 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.05 1.94 3.27 -2.38 -0.01 1.93 16 25 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 26 H 0.41 11.72 6.63 -92.71 -0.61 11.11 16 27 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.08 6.81 -2.39 -0.02 1.07 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 1.08 7.69 -2.39 -0.02 1.06 16 33 H 0.08 1.24 7.70 -2.39 -0.02 1.22 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -79.91 292.89 2.23 -77.67 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.36 Total: 18.92 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 3.89 Total: -10.18 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -2.05 Total: -88.72 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -1.65 Total: -43.55 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.67 Total: 45.85 kcal Total: -79.91 2.23 -77.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597366006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.355 kcal (2) G-P(sol) polarization free energy of solvation -79.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds