Wall clock time and date at job start Mon Mar 30 2020 03:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 6 6 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 7 7 C 1.34779 * 120.00473 * 154.99801 * 6 4 3 8 8 O 1.21289 * 119.99717 * 0.02562 * 7 6 4 9 9 C 1.50696 * 120.00685 * 180.02562 * 7 6 4 10 10 H 1.09003 * 109.47084 * 300.00488 * 9 7 6 11 11 C 1.53005 * 109.46848 * 60.00311 * 9 7 6 12 12 C 1.50700 * 109.47204 * 179.97438 * 9 7 6 13 13 H 1.08000 * 120.00194 * 0.02562 * 12 9 7 14 14 C 1.37878 * 119.99798 * 179.97438 * 12 9 7 15 15 N 1.31516 * 120.00051 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 120.00026 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47154 * 90.00001 * 16 14 12 18 18 H 1.48496 * 109.46790 * 210.00168 * 16 14 12 19 19 H 1.48503 * 109.46856 * 330.00171 * 16 14 12 20 20 C 1.53001 * 109.47328 * 305.00349 * 4 3 2 21 21 C 1.52999 * 117.50146 * 248.74885 * 20 4 3 22 22 C 1.52999 * 117.50249 * 180.08833 * 20 4 3 23 23 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 25 25 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 26 26 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 27 27 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 28 28 H 0.96995 * 120.00227 * 335.00624 * 6 4 3 29 29 H 1.08998 * 109.47028 * 300.00507 * 11 9 7 30 30 H 1.09003 * 109.47133 * 60.00207 * 11 9 7 31 31 H 1.09002 * 109.46962 * 180.02562 * 11 9 7 32 32 H 0.96999 * 119.99954 * 179.97438 * 15 14 12 33 33 H 1.09004 * 115.55171 * 34.41343 * 20 4 3 34 34 H 1.09001 * 117.49752 * 359.97438 * 21 20 4 35 35 H 1.08995 * 117.50285 * 145.01549 * 21 20 4 36 36 H 1.09010 * 117.49514 * 214.98057 * 22 20 4 37 37 H 1.08996 * 117.49740 * 359.96729 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1764 0.0890 6 7 3.9757 0.5644 -1.2527 7 6 5.2195 0.7945 -1.7180 8 8 5.9746 1.5148 -1.0998 9 6 5.6722 0.1569 -3.0062 10 1 5.6229 -0.9279 -2.9117 11 6 4.7606 0.6113 -4.1480 12 6 7.0906 0.5722 -3.3010 13 1 7.6122 1.2315 -2.6230 14 6 7.7226 0.1096 -4.4356 15 7 7.0876 -0.6937 -5.2610 16 14 9.4811 0.6237 -4.8007 17 1 10.4192 -0.3476 -4.1828 18 1 9.6937 0.6512 -6.2701 19 1 9.7280 1.9761 -4.2392 20 6 3.9791 0.3193 1.1806 21 6 4.7357 1.0095 2.3172 22 6 5.4799 0.0791 1.3562 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6886 1.8464 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 3.3720 -0.0119 -1.7470 29 1 3.7346 0.3115 -3.9350 30 1 4.8099 1.6962 -4.2425 31 1 5.0878 0.1499 -5.0797 32 1 7.5322 -1.0189 -6.0594 33 1 3.3047 -0.4947 1.4465 34 1 4.9178 2.0801 2.2233 35 1 4.5594 0.6495 3.3308 36 1 5.7928 -0.8928 1.7379 37 1 6.1512 0.5372 0.6299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597426606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:34 Heat of formation + Delta-G solvation = -86.779567 kcal Electronic energy + Delta-G solvation = -17980.457333 eV Core-core repulsion = 15143.754369 eV Total energy + Delta-G solvation = -2836.702965 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.96688 -39.00448 -37.71155 -35.71016 -35.01457 -32.56005 -30.39988 -27.21963 -27.09883 -24.87358 -24.02868 -23.16139 -21.31985 -21.02080 -18.36684 -17.81502 -17.49503 -17.16756 -16.66996 -16.28353 -16.15601 -15.84321 -15.13134 -14.74709 -14.42875 -14.17527 -13.42642 -13.32400 -12.98636 -12.85068 -12.70968 -12.65371 -12.54650 -12.29275 -12.16402 -12.04602 -11.97612 -11.23404 -11.04895 -11.00085 -10.59444 -10.54566 -10.19640 -9.80077 -8.13122 -6.23261 1.41214 1.41565 1.53678 1.98126 2.32008 2.49679 2.89164 3.10817 3.16425 3.64241 3.95866 4.18333 4.20108 4.35047 4.38347 4.54894 4.60972 4.64006 4.68751 4.76435 4.80445 4.85122 4.95690 4.97330 5.02324 5.08037 5.31708 5.45304 5.52604 5.69534 5.78127 5.96708 6.23529 6.26170 6.79158 6.91908 7.42785 7.63050 8.92883 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030046 B = 0.006345 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.692929 B = 4411.988830 C = 5081.243915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.067 3.933 4 C 0.172 3.828 5 H 0.081 0.919 6 N -0.717 5.717 7 C 0.526 3.474 8 O -0.577 6.577 9 C 0.023 3.977 10 H 0.034 0.966 11 C -0.118 4.118 12 C -0.524 4.524 13 H 0.050 0.950 14 C 0.017 3.983 15 N -0.913 5.913 16 Si 0.956 3.044 17 H -0.276 1.276 18 H -0.275 1.275 19 H -0.278 1.278 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.210 4.210 23 H 0.094 0.906 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.407 0.593 29 H 0.048 0.952 30 H 0.024 0.976 31 H 0.069 0.931 32 H 0.264 0.736 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.147 1.720 10.718 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.010 4.010 4 C 0.067 3.933 5 H 0.099 0.901 6 N -0.369 5.369 7 C 0.315 3.685 8 O -0.457 6.457 9 C 0.002 3.998 10 H 0.052 0.948 11 C -0.177 4.177 12 C -0.563 4.563 13 H 0.068 0.932 14 C -0.181 4.181 15 N -0.553 5.553 16 Si 0.781 3.219 17 H -0.201 1.201 18 H -0.200 1.200 19 H -0.203 1.203 20 C -0.174 4.174 21 C -0.191 4.191 22 C -0.248 4.248 23 H 0.112 0.888 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.243 0.757 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.498 1.980 10.982 17.514 hybrid contribution 0.737 0.002 -0.636 0.974 sum -12.760 1.982 10.346 16.547 Atomic orbital electron populations 1.22918 0.79398 1.03729 1.00930 1.87877 1.21418 1.27656 1.95581 1.22704 0.90463 0.85466 1.02340 1.20668 0.93526 0.96110 0.82971 0.90145 1.46037 1.14662 1.51522 1.24670 1.21373 0.80799 0.79479 0.86819 1.90440 1.54861 1.39899 1.60474 1.18792 0.95876 0.95875 0.89273 0.94801 1.21542 0.96298 0.98815 1.00999 1.21289 0.98153 1.29401 1.07412 0.93182 1.25617 1.01757 0.95004 0.95764 1.69963 1.38086 1.33915 1.13300 0.85592 0.80387 0.78509 0.77368 1.20143 1.20000 1.20264 1.22606 0.94324 1.02758 0.97712 1.22986 1.02720 0.98299 0.95137 1.23175 0.95814 1.01403 1.04362 0.88785 0.92742 0.93365 0.91828 0.89638 0.75712 0.93286 0.95699 0.91236 0.92694 0.86505 0.89117 0.86715 0.89312 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -8.91 9.46 -148.98 -1.41 -10.32 16 3 C 0.07 1.43 5.68 71.98 0.41 1.84 16 4 C 0.17 5.06 2.67 44.99 0.12 5.19 16 5 H 0.08 2.62 7.34 -2.39 -0.02 2.61 16 6 N -0.72 -25.46 4.93 -442.53 -2.18 -27.64 16 7 C 0.53 24.34 6.48 87.66 0.57 24.91 16 8 O -0.58 -30.09 12.48 -3.06 -0.04 -30.12 16 9 C 0.02 1.19 2.64 -12.29 -0.03 1.15 16 10 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 11 C -0.12 -5.53 8.86 71.98 0.64 -4.89 16 12 C -0.52 -30.81 8.37 25.60 0.21 -30.59 16 13 H 0.05 3.13 6.75 -2.91 -0.02 3.11 16 14 C 0.02 0.99 5.30 84.65 0.45 1.44 16 15 N -0.91 -52.27 11.32 21.45 0.24 -52.03 16 16 Si 0.96 45.64 29.54 68.60 2.03 47.66 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 20 C -0.15 -4.45 5.22 -10.79 -0.06 -4.51 16 21 C -0.15 -4.04 10.18 30.62 0.31 -3.73 16 22 C -0.21 -7.19 9.74 30.62 0.30 -6.89 16 23 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.41 13.15 7.80 -92.71 -0.72 12.43 16 29 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 30 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 3.58 6.07 -2.39 -0.01 3.57 16 32 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.12 3.16 7.39 -2.39 -0.02 3.15 16 34 H 0.09 2.39 8.05 -2.39 -0.02 2.37 16 35 H 0.11 2.37 8.14 -2.39 -0.02 2.36 16 36 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.08 3.67 5.02 -2.39 -0.01 3.65 16 Total: -1.00 -67.22 302.79 3.14 -64.08 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.33 Total: 22.83 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 4.17 Total: -14.46 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -1.94 Total: -79.67 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.45 Total: -40.44 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -67.22 3.14 -64.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597426606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.696 kcal (2) G-P(sol) polarization free energy of solvation -67.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds