Wall clock time and date at job start Mon Mar 30 2020 03:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47402 * 2 1 4 4 C 1.50706 * 109.46767 * 119.99630 * 2 1 3 5 5 H 1.08000 * 119.99563 * 119.99877 * 4 2 1 6 6 C 1.37874 * 119.99816 * 300.00103 * 4 2 1 7 7 N 1.31503 * 120.00446 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99630 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47536 * 89.99658 * 8 6 4 10 10 H 1.48496 * 109.47215 * 209.99905 * 8 6 4 11 11 H 1.48505 * 109.47222 * 329.99910 * 8 6 4 12 12 C 1.50696 * 109.47158 * 239.99387 * 2 1 3 13 13 O 1.21281 * 120.00388 * 240.00196 * 12 2 1 14 14 N 1.34785 * 119.99916 * 60.00354 * 12 2 1 15 15 C 1.46496 * 120.00181 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.61486 * 59.77759 * 15 14 12 17 17 C 1.53175 * 109.54546 * 299.56018 * 15 14 12 18 18 C 1.53092 * 109.16179 * 297.11361 * 17 15 14 19 19 O 1.42910 * 109.41107 * 302.39040 * 18 17 15 20 20 C 1.42900 * 114.09727 * 61.16189 * 19 18 17 21 21 C 1.53090 * 109.41229 * 298.83586 * 20 19 18 22 22 H 1.09001 * 109.46786 * 60.00149 * 1 2 3 23 23 H 1.08996 * 109.47402 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47054 * 300.00568 * 1 2 3 25 25 H 0.97001 * 120.00330 * 180.02562 * 7 6 4 26 26 H 0.97002 * 119.99793 * 359.97438 * 14 12 2 27 27 H 1.09004 * 109.47343 * 180.22226 * 16 15 14 28 28 H 1.09000 * 109.47218 * 300.22271 * 16 15 14 29 29 H 1.08998 * 109.47446 * 60.22257 * 16 15 14 30 30 H 1.09006 * 109.52647 * 57.01661 * 17 15 14 31 31 H 1.08998 * 109.52537 * 177.20553 * 17 15 14 32 32 H 1.08998 * 109.48147 * 182.40843 * 18 17 15 33 33 H 1.08997 * 109.48550 * 62.37144 * 18 17 15 34 34 H 1.09003 * 109.47953 * 178.86010 * 20 19 18 35 35 H 1.08995 * 109.49265 * 58.82602 * 20 19 18 36 36 H 1.09001 * 109.52724 * 297.70937 * 21 20 19 37 37 H 1.09000 * 109.52338 * 177.51272 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3223 -1.1193 4.0080 9 1 3.6303 -0.5439 4.4120 10 1 1.3443 -0.9487 5.1123 11 1 2.4878 -2.5652 3.7124 12 6 2.0324 -0.7105 -1.2303 13 8 2.7296 -1.6966 -1.1190 14 7 1.7068 -0.2501 -2.4546 15 6 2.1956 -0.9404 -3.6507 16 6 1.6925 -2.3854 -3.6514 17 6 3.7273 -0.9313 -3.6577 18 6 4.2208 0.5158 -3.7364 19 8 3.6856 1.1371 -4.9068 20 6 2.2582 1.1998 -4.9332 21 6 1.6859 -0.2198 -4.9025 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7094 1.1620 3.4843 26 1 1.1488 0.5384 -2.5436 27 1 2.0606 -2.8979 -4.5401 28 1 2.0558 -2.8971 -2.7602 29 1 0.6025 -2.3906 -3.6543 30 1 4.0986 -1.3935 -2.7430 31 1 4.0909 -1.4877 -4.5215 32 1 5.3096 0.5263 -3.7849 33 1 3.8908 1.0610 -2.8522 34 1 1.9332 1.7031 -5.8438 35 1 1.9024 1.7540 -4.0647 36 1 2.0083 -0.7619 -5.7915 37 1 0.5971 -0.1732 -4.8780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597434548.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:21 Heat of formation + Delta-G solvation = -117.605828 kcal Electronic energy + Delta-G solvation = -18571.534955 eV Core-core repulsion = 15733.495264 eV Total energy + Delta-G solvation = -2838.039692 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.56987 -39.48756 -36.51825 -35.70394 -33.34884 -32.09758 -31.61968 -29.31161 -27.20063 -24.90106 -24.60155 -23.73162 -21.49117 -20.13350 -18.32379 -17.98981 -17.07411 -16.95596 -16.58428 -16.34183 -15.94519 -15.45456 -15.02364 -14.85739 -14.30954 -13.80783 -13.59175 -13.49487 -13.22183 -12.96043 -12.90291 -12.84029 -12.63903 -12.58194 -12.26965 -12.14526 -11.99545 -11.54722 -11.35000 -11.03469 -10.62157 -10.54355 -10.05334 -9.83638 -8.15177 -6.25137 1.39369 1.40281 1.51876 2.00882 2.35082 2.53540 2.95133 3.14670 3.62867 3.85233 3.90991 4.04846 4.24802 4.37415 4.43847 4.70033 4.72253 4.73407 4.75368 4.79045 4.83139 4.94352 4.96446 5.01589 5.10136 5.12647 5.20149 5.35665 5.50842 5.72400 5.80517 5.95652 6.22698 6.23798 6.77747 6.90491 7.41415 7.63228 8.90641 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036127 B = 0.006468 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.859907 B = 4327.664277 C = 4370.568421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.022 3.978 3 H 0.035 0.965 4 C -0.526 4.526 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.526 3.474 13 O -0.572 6.572 14 N -0.721 5.721 15 C 0.167 3.833 16 C -0.156 4.156 17 C -0.162 4.162 18 C 0.068 3.932 19 O -0.393 6.393 20 C 0.052 3.948 21 C -0.145 4.145 22 H 0.050 0.950 23 H 0.022 0.978 24 H 0.068 0.932 25 H 0.264 0.736 26 H 0.404 0.596 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.034 0.966 34 H 0.122 0.878 35 H 0.049 0.951 36 H 0.099 0.901 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 0.924 -15.635 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.001 3.999 3 H 0.053 0.947 4 C -0.564 4.564 5 H 0.068 0.932 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.200 1.200 11 H -0.204 1.204 12 C 0.315 3.685 13 O -0.451 6.451 14 N -0.374 5.374 15 C 0.081 3.919 16 C -0.214 4.214 17 C -0.201 4.201 18 C -0.009 4.009 19 O -0.312 6.312 20 C -0.024 4.024 21 C -0.183 4.183 22 H 0.069 0.931 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.240 0.760 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.053 0.947 34 H 0.139 0.861 35 H 0.067 0.933 36 H 0.118 0.882 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.024 0.404 -15.577 15.583 hybrid contribution -0.047 -0.244 1.483 1.504 sum -0.023 0.160 -14.094 14.095 Atomic orbital electron populations 1.21538 0.95265 0.99291 1.01540 1.18805 0.95208 0.95740 0.90142 0.94701 1.21302 1.31349 1.12641 0.91113 0.93233 1.25583 0.95254 0.95764 1.01416 1.69946 1.37347 1.23660 1.24219 0.85629 0.78356 0.78806 0.79295 1.20097 1.20031 1.20374 1.21313 0.78220 0.83685 0.85243 1.90458 1.39314 1.28055 1.87315 1.46207 1.54224 1.32309 1.04705 1.20445 0.93215 0.93056 0.85140 1.22122 1.01175 0.95590 1.02526 1.22527 0.96129 0.98152 1.03285 1.22456 0.99128 0.91877 0.87433 1.87878 1.21587 1.79986 1.41799 1.22806 0.80240 0.95975 1.03381 1.22447 1.02547 0.96881 0.96442 0.93102 0.95920 0.91314 0.92682 0.75968 0.90101 0.93775 0.92124 0.91855 0.89355 0.88220 0.94732 0.86060 0.93315 0.88232 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.87 71.98 0.64 -4.71 16 2 C 0.02 1.11 2.64 -12.28 -0.03 1.08 16 3 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 4 C -0.53 -30.34 8.37 25.60 0.21 -30.13 16 5 H 0.05 3.05 6.75 -2.91 -0.02 3.03 16 6 C 0.02 1.05 5.30 84.66 0.45 1.50 16 7 N -0.91 -51.39 11.32 21.44 0.24 -51.15 16 8 Si 0.95 45.11 29.54 68.60 2.03 47.13 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 C 0.53 23.26 6.57 87.65 0.58 23.84 16 13 O -0.57 -28.92 11.68 -3.03 -0.04 -28.96 16 14 N -0.72 -23.47 4.12 -422.39 -1.74 -25.21 16 15 C 0.17 4.58 0.66 3.72 0.00 4.58 16 16 C -0.16 -4.42 8.42 71.98 0.61 -3.81 16 17 C -0.16 -4.77 4.76 30.68 0.15 -4.62 16 18 C 0.07 1.90 6.68 72.01 0.48 2.38 16 19 O -0.39 -10.05 10.77 -148.98 -1.60 -11.65 16 20 C 0.05 1.03 6.67 72.01 0.48 1.51 16 21 C -0.15 -2.75 4.96 30.68 0.15 -2.59 16 22 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 23 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 3.46 6.07 -2.39 -0.01 3.45 16 25 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 26 H 0.40 11.29 6.94 -92.71 -0.64 10.64 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.04 1.62 6.16 -2.39 -0.01 1.60 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 2.35 6.14 -2.38 -0.01 2.33 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.03 1.09 7.75 -2.39 -0.02 1.07 16 34 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 0.99 7.09 -2.39 -0.02 0.97 16 36 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -66.22 288.70 3.02 -63.20 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.42 Total: 17.63 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 3.71 Total: -10.99 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -1.50 Total: -76.36 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -1.64 Total: -40.61 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -66.22 3.02 -63.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597434548.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.404 kcal (2) G-P(sol) polarization free energy of solvation -66.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds