Wall clock time and date at job start Mon Mar 30 2020 03:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47237 * 2 1 4 4 C 1.50706 * 109.47224 * 240.00573 * 2 1 3 5 5 H 1.08000 * 119.99694 * 239.99895 * 4 2 1 6 6 C 1.37877 * 120.00136 * 59.99270 * 4 2 1 7 7 N 1.31516 * 119.99842 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00338 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46778 * 60.00054 * 8 6 4 10 10 H 1.48498 * 109.47417 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46766 * 300.00746 * 8 6 4 12 12 C 1.50700 * 109.47519 * 120.00338 * 2 1 3 13 13 O 1.21277 * 119.99825 * 104.33120 * 12 2 1 14 14 N 1.34769 * 119.99992 * 284.33793 * 12 2 1 15 15 C 1.46503 * 120.00162 * 7.07400 * 14 12 2 16 16 C 1.52993 * 109.47144 * 97.03632 * 15 14 12 17 17 C 1.53000 * 109.47320 * 185.69793 * 16 15 14 18 18 O 1.42896 * 109.47405 * 180.02562 * 17 16 15 19 19 C 1.46500 * 120.00144 * 187.08112 * 14 12 2 20 20 C 1.53001 * 117.50134 * 16.37819 * 19 14 12 21 21 C 1.53006 * 117.49512 * 307.71779 * 19 14 12 22 22 H 1.08997 * 109.46988 * 308.34822 * 1 2 3 23 23 H 1.08998 * 109.47461 * 68.35161 * 1 2 3 24 24 H 1.09000 * 109.47114 * 188.35262 * 1 2 3 25 25 H 0.96992 * 120.00015 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.47458 * 217.03889 * 15 14 12 27 27 H 1.09005 * 109.46955 * 337.03579 * 15 14 12 28 28 H 1.08999 * 109.47424 * 305.70026 * 16 15 14 29 29 H 1.09006 * 109.47337 * 65.69620 * 16 15 14 30 30 H 1.09007 * 109.47161 * 300.00113 * 17 16 15 31 31 H 1.09000 * 109.47002 * 60.00363 * 17 16 15 32 32 H 0.96697 * 114.00655 * 180.02562 * 18 17 16 33 33 H 1.08997 * 115.55391 * 162.05365 * 19 14 12 34 34 H 1.09007 * 117.49414 * 0.02562 * 20 19 14 35 35 H 1.08992 * 117.50057 * 145.02315 * 20 19 14 36 36 H 1.08998 * 117.50189 * 214.98144 * 21 19 14 37 37 H 1.09002 * 117.49785 * 359.97438 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 1.8258 -2.5200 -4.0079 10 1 1.8267 -0.4196 -5.2206 11 1 3.8062 -1.1206 -4.0083 12 6 2.0324 -0.7105 1.2304 13 8 2.4797 -1.8342 1.1415 14 7 1.9846 -0.0971 2.4294 15 6 1.3053 1.1939 2.5653 16 6 -0.1172 0.9698 3.0818 17 6 -0.8727 2.3002 3.0891 18 8 -2.2012 2.0910 3.5721 19 6 2.6119 -0.7211 3.5970 20 6 3.6175 -1.8457 3.3421 21 6 2.2342 -2.1700 3.9119 22 1 -0.3633 0.6376 0.8059 23 1 -0.3634 0.3791 -0.9551 24 1 -0.3633 -1.0168 0.1493 25 1 0.7093 1.1619 -3.4843 26 1 1.8530 1.8203 3.2694 27 1 1.2658 1.6876 1.5943 28 1 -0.6327 0.2628 2.4317 29 1 -0.0772 0.5691 4.0948 30 1 -0.3573 3.0072 3.7393 31 1 -0.9129 2.7008 2.0762 32 1 -2.7393 2.8938 3.6036 33 1 2.8031 -0.0564 4.4395 34 1 3.8126 -2.1210 2.3056 35 1 4.4700 -1.9211 4.0170 36 1 2.1773 -2.4586 4.9615 37 1 1.5187 -2.6586 3.2506 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597452002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:51 Heat of formation + Delta-G solvation = -53.429549 kcal Electronic energy + Delta-G solvation = -18265.337843 eV Core-core repulsion = 15430.081043 eV Total energy + Delta-G solvation = -2835.256799 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.75902 -37.08077 -35.93653 -34.86158 -33.37274 -30.86321 -30.17090 -25.19687 -25.07936 -23.47271 -21.97258 -21.49217 -21.18018 -18.15069 -17.29369 -16.37129 -16.33402 -15.68621 -14.99236 -14.66476 -14.55963 -13.76839 -13.50039 -13.15152 -13.06891 -12.44400 -12.22099 -12.19070 -11.47613 -11.23255 -10.96996 -10.92041 -10.83446 -10.75700 -10.54280 -10.34694 -10.22792 -9.98641 -9.94634 -9.87491 -8.95378 -8.48523 -8.19652 -7.81004 -6.03487 -4.07123 3.35627 3.38217 3.41347 3.47096 3.59700 4.25511 4.45918 4.46383 5.04155 5.21123 5.24091 5.27579 5.30276 5.42213 5.47228 5.52246 5.75184 5.83576 5.86609 6.03678 6.14525 6.23963 6.38801 6.45351 6.68510 6.80705 6.88982 6.98968 7.29707 7.43158 7.64346 7.78202 7.96920 8.11697 8.37816 8.99787 9.21338 9.58004 11.03462 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.008508 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.282584 B = 3290.343671 C = 4503.796067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.032 3.968 3 H 0.048 0.952 4 C -0.500 4.500 5 H 0.071 0.929 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.523 3.477 13 O -0.535 6.535 14 N -0.599 5.599 15 C 0.118 3.882 16 C -0.143 4.143 17 C 0.078 3.922 18 O -0.575 6.575 19 C 0.073 3.927 20 C -0.194 4.194 21 C -0.191 4.191 22 H 0.027 0.973 23 H 0.095 0.905 24 H 0.026 0.974 25 H 0.261 0.739 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.376 0.624 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 4.652 12.049 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 H 0.066 0.934 4 C -0.539 4.539 5 H 0.089 0.911 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.316 3.684 13 O -0.411 6.411 14 N -0.332 5.332 15 C -0.006 4.006 16 C -0.182 4.182 17 C 0.000 4.000 18 O -0.380 6.380 19 C -0.032 4.032 20 C -0.232 4.232 21 C -0.230 4.230 22 H 0.046 0.954 23 H 0.114 0.886 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.223 0.777 33 H 0.135 0.865 34 H 0.155 0.845 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.114 3.549 11.863 12.433 hybrid contribution 0.045 0.253 -0.694 0.740 sum -1.068 3.802 11.169 11.847 Atomic orbital electron populations 1.21957 0.96291 0.98841 1.02911 1.18873 0.94318 0.96513 0.89153 0.93429 1.21094 1.31021 1.12669 0.89075 0.91072 1.24930 0.95121 0.95077 0.99046 1.69850 1.37008 1.23038 1.23637 0.86520 0.79230 0.79801 0.81678 1.20182 1.21351 1.20228 1.22067 0.76116 0.86246 0.83985 1.90374 1.45550 1.19395 1.85780 1.47594 1.55890 1.21744 1.07961 1.21408 0.91075 0.85093 1.03006 1.22108 0.95751 0.97543 1.02749 1.22120 0.82669 0.97260 0.97984 1.86484 1.25066 1.37787 1.88687 1.21534 1.01604 0.89350 0.90718 1.23795 0.92084 1.01828 1.05461 1.23202 0.99955 0.99297 1.00535 0.95434 0.88649 0.95432 0.92900 0.91412 0.88523 0.89674 0.91539 0.93906 0.92886 0.77732 0.86504 0.84457 0.90061 0.89543 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.47 37.16 0.31 -3.00 16 2 C 0.03 0.80 1.79 -92.92 -0.17 0.63 16 3 H 0.05 1.20 6.86 -51.93 -0.36 0.84 16 4 C -0.50 -14.14 8.36 -34.44 -0.29 -14.42 16 5 H 0.07 2.12 6.87 -52.49 -0.36 1.76 16 6 C 0.06 1.63 5.28 -17.82 -0.09 1.53 16 7 N -0.90 -24.90 11.29 55.43 0.63 -24.27 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.52 11.98 6.68 -10.99 -0.07 11.91 16 13 O -0.53 -13.55 11.34 5.56 0.06 -13.49 16 14 N -0.60 -10.94 2.84 -166.11 -0.47 -11.41 16 15 C 0.12 1.76 4.94 -4.04 -0.02 1.74 16 16 C -0.14 -2.05 5.07 -26.73 -0.14 -2.19 16 17 C 0.08 0.94 7.05 37.16 0.26 1.20 16 18 O -0.58 -7.18 13.66 -35.23 -0.48 -7.66 16 19 C 0.07 1.17 6.62 -67.93 -0.45 0.72 16 20 C -0.19 -3.27 9.63 -26.69 -0.26 -3.53 16 21 C -0.19 -3.08 9.87 -26.69 -0.26 -3.34 16 22 H 0.03 0.54 4.08 -51.93 -0.21 0.33 16 23 H 0.10 2.45 5.89 -51.93 -0.31 2.14 16 24 H 0.03 0.65 8.12 -51.93 -0.42 0.23 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.07 0.82 8.12 -51.93 -0.42 0.39 16 27 H 0.10 1.57 5.33 -51.93 -0.28 1.29 16 28 H 0.08 1.46 6.08 -51.93 -0.32 1.14 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.38 2.79 9.12 45.56 0.42 3.21 16 33 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.14 2.85 5.26 -52.01 -0.27 2.58 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.82 7.56 -51.93 -0.39 1.43 16 LS Contribution 294.20 15.07 4.43 4.43 Total: -1.00 -31.55 294.20 -6.61 -38.17 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.59 Total: 6.19 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -1.17 Total: -8.75 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.15 Total: -35.68 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.42 Total: -21.15 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.55 -6.61 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597452002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.261 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds