Wall clock time and date at job start Mon Mar 30 2020 03:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46941 * 2 1 4 4 C 1.50708 * 109.47044 * 240.00092 * 2 1 3 5 5 H 1.07998 * 119.99603 * 242.75238 * 4 2 1 6 6 C 1.37873 * 119.99785 * 62.74763 * 4 2 1 7 7 N 1.31513 * 120.00222 * 4.52373 * 6 4 2 8 8 Si 1.86802 * 119.99690 * 184.52078 * 6 4 2 9 9 H 1.48498 * 109.46949 * 60.00518 * 8 6 4 10 10 H 1.48500 * 109.47220 * 300.00239 * 8 6 4 11 11 H 1.48504 * 109.47067 * 180.02562 * 8 6 4 12 12 C 1.50702 * 109.46945 * 120.00240 * 2 1 3 13 13 O 1.21274 * 119.99901 * 101.63046 * 12 2 1 14 14 N 1.34776 * 119.99817 * 281.62502 * 12 2 1 15 15 C 1.46926 * 120.62951 * 3.58356 * 14 12 2 16 16 C 1.53195 * 108.77412 * 126.36874 * 15 14 12 17 17 C 1.53041 * 109.31285 * 54.63344 * 16 15 14 18 18 C 1.53036 * 109.53587 * 298.63500 * 17 16 15 19 19 C 1.53003 * 109.49753 * 181.34897 * 18 17 16 20 20 O 1.42897 * 109.50064 * 301.41307 * 18 17 16 21 21 C 1.46926 * 120.63002 * 183.30260 * 14 12 2 22 22 H 1.09000 * 109.46963 * 187.14389 * 1 2 3 23 23 H 1.08994 * 109.46911 * 307.14214 * 1 2 3 24 24 H 1.08998 * 109.47122 * 67.14634 * 1 2 3 25 25 H 0.97003 * 120.00077 * 5.39451 * 7 6 4 26 26 H 1.09002 * 109.58590 * 246.15073 * 15 14 12 27 27 H 1.08997 * 109.58866 * 6.43597 * 15 14 12 28 28 H 1.09001 * 109.49633 * 174.58327 * 16 15 14 29 29 H 1.08992 * 109.49591 * 294.67838 * 16 15 14 30 30 H 1.08998 * 109.46261 * 58.65505 * 17 16 15 31 31 H 1.09001 * 109.46034 * 178.61505 * 17 16 15 32 32 H 1.09008 * 109.47282 * 59.99747 * 19 18 17 33 33 H 1.08995 * 109.47184 * 179.97438 * 19 18 17 34 34 H 1.09000 * 109.47174 * 300.00187 * 19 18 17 35 35 H 0.96705 * 113.99729 * 300.00270 * 20 18 17 36 36 H 1.09001 * 109.58447 * 353.41793 * 21 14 12 37 37 H 1.08999 * 109.58683 * 113.84171 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6161 -1.6137 -1.1320 6 6 1.7466 -0.2072 -2.4819 7 7 1.1128 0.9390 -2.6008 8 14 2.2599 -1.1535 -4.0086 9 1 1.6130 -2.4901 -4.0032 10 1 3.7358 -1.3177 -4.0163 11 1 1.8393 -0.4044 -5.2200 12 6 2.0323 -0.7105 1.2305 13 8 2.4341 -1.8519 1.1500 14 7 2.0352 -0.0773 2.4202 15 6 1.4797 1.2768 2.5488 16 6 0.4395 1.2783 3.6735 17 6 1.0782 0.7366 4.9544 18 6 1.5406 -0.7043 4.7259 19 6 2.1486 -1.2563 6.0169 20 8 0.4234 -1.5087 4.3429 21 6 2.5882 -0.7304 3.6145 22 1 -0.3633 -1.0197 0.1278 23 1 -0.3633 0.6205 0.8192 24 1 -0.3633 0.3991 -0.9470 25 1 0.9156 1.4682 -1.8122 26 1 2.2787 1.9782 2.7893 27 1 1.0073 1.5686 1.6109 28 1 0.0894 2.2964 3.8440 29 1 -0.4023 0.6461 3.3912 30 1 1.9350 1.3547 5.2225 31 1 0.3471 0.7595 5.7626 32 1 1.3997 -1.2365 6.8088 33 1 2.4773 -2.2826 5.8539 34 1 3.0014 -0.6431 6.3081 35 1 -0.2846 -1.5374 5.0010 36 1 2.8447 -1.7636 3.3802 37 1 3.4795 -0.1961 3.9435 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597457781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:25 Heat of formation + Delta-G solvation = -98.203129 kcal Electronic energy + Delta-G solvation = -18616.900111 eV Core-core repulsion = 15779.701784 eV Total energy + Delta-G solvation = -2837.198327 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.97059 -37.92825 -35.18472 -34.17710 -32.15849 -31.52404 -30.05296 -26.83249 -25.48086 -24.87613 -22.16434 -22.04585 -20.27257 -18.54743 -16.71585 -16.45640 -16.32012 -15.42367 -14.85793 -14.59913 -14.18365 -13.67098 -13.47933 -13.30325 -12.90199 -12.72969 -12.57866 -12.04914 -11.97653 -11.69591 -11.31967 -11.07069 -10.96742 -10.94122 -10.79014 -10.53607 -10.44266 -10.25743 -10.00988 -9.83334 -8.65931 -8.39136 -8.26402 -8.03969 -6.29564 -4.00971 3.51181 3.53537 3.60737 3.71332 3.74815 4.18633 4.60451 4.64563 4.76607 4.85298 5.05702 5.27274 5.38226 5.41744 5.50551 5.58384 5.65003 5.74195 5.83266 5.83491 5.97065 6.00335 6.05821 6.26694 6.34802 6.44746 6.67076 6.75644 7.02637 7.21301 7.49633 7.73151 7.97265 8.29582 8.60360 8.92905 9.23843 9.67543 11.06372 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042932 B = 0.006591 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.037559 B = 4246.995063 C = 4560.306176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.018 3.982 3 H 0.038 0.962 4 C -0.579 4.579 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 1.070 2.930 9 H -0.287 1.287 10 H -0.288 1.288 11 H -0.283 1.283 12 C 0.533 3.467 13 O -0.541 6.541 14 N -0.619 5.619 15 C 0.107 3.893 16 C -0.132 4.132 17 C -0.142 4.142 18 C 0.114 3.886 19 C -0.175 4.175 20 O -0.544 6.544 21 C 0.124 3.876 22 H 0.041 0.959 23 H 0.024 0.976 24 H 0.073 0.927 25 H 0.268 0.732 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.367 0.633 36 H 0.095 0.905 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 2.390 16.850 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.003 4.003 3 H 0.055 0.945 4 C -0.617 4.617 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.898 3.102 9 H -0.214 1.214 10 H -0.215 1.215 11 H -0.209 1.209 12 C 0.324 3.676 13 O -0.416 6.416 14 N -0.355 5.355 15 C -0.017 4.017 16 C -0.170 4.170 17 C -0.180 4.180 18 C 0.072 3.928 19 C -0.233 4.233 20 O -0.348 6.348 21 C 0.001 3.999 22 H 0.060 0.940 23 H 0.043 0.957 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.213 0.787 36 H 0.113 0.887 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.461 1.668 14.566 14.668 hybrid contribution -0.267 0.224 2.489 2.513 sum -0.727 1.892 17.055 17.175 Atomic orbital electron populations 1.21857 0.96886 1.00040 1.00848 1.18958 0.93705 0.96511 0.91096 0.94478 1.21923 1.36825 1.12445 0.90542 0.91681 1.25801 0.94361 0.97013 1.01161 1.70825 1.38463 1.12365 1.33616 0.83537 0.76165 0.75263 0.75260 1.21366 1.21459 1.20879 1.21576 0.75805 0.86425 0.83797 1.90514 1.47197 1.18561 1.85346 1.48162 1.62487 1.16493 1.08336 1.21719 0.95877 0.83829 1.00224 1.21844 0.99262 1.01103 0.94779 1.22194 1.01071 0.96606 0.98101 1.21539 0.87688 0.89587 0.93960 1.22433 1.01579 1.02308 0.97018 1.86759 1.29677 1.70955 1.47399 1.21299 0.93377 1.00582 0.84653 0.94020 0.95720 0.90841 0.92043 0.92430 0.88541 0.91157 0.90747 0.91125 0.91843 0.92266 0.91537 0.91572 0.78736 0.88715 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.55 37.16 0.32 -2.99 16 2 C 0.02 0.48 1.42 -92.92 -0.13 0.35 16 3 H 0.04 0.96 6.61 -51.93 -0.34 0.62 16 4 C -0.58 -17.19 8.33 -34.44 -0.29 -17.48 16 5 H 0.06 2.05 6.89 -52.49 -0.36 1.69 16 6 C 0.02 0.56 5.22 -17.82 -0.09 0.47 16 7 N -0.92 -27.14 12.72 55.43 0.70 -26.43 16 8 Si 1.07 26.14 29.91 -169.99 -5.08 21.06 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.53 13.12 6.87 -10.98 -0.08 13.04 16 13 O -0.54 -15.22 15.06 5.56 0.08 -15.13 16 14 N -0.62 -11.88 2.92 -173.03 -0.51 -12.38 16 15 C 0.11 1.67 5.83 -3.71 -0.02 1.65 16 16 C -0.13 -1.64 5.94 -26.61 -0.16 -1.80 16 17 C -0.14 -1.51 4.89 -26.69 -0.13 -1.64 16 18 C 0.11 1.44 1.00 -90.72 -0.09 1.35 16 19 C -0.18 -1.69 8.82 37.16 0.33 -1.36 16 20 O -0.54 -7.91 12.17 -35.23 -0.43 -8.34 16 21 C 0.12 2.02 5.36 -3.93 -0.02 2.00 16 22 H 0.04 1.03 8.13 -51.93 -0.42 0.60 16 23 H 0.02 0.49 6.40 -51.93 -0.33 0.16 16 24 H 0.07 1.88 5.91 -51.93 -0.31 1.57 16 25 H 0.27 7.75 6.03 -40.82 -0.25 7.50 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.10 1.65 4.43 -51.93 -0.23 1.42 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.05 7.61 -51.93 -0.40 0.66 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.37 3.63 9.05 45.56 0.41 4.04 16 36 H 0.09 1.80 7.00 -51.93 -0.36 1.43 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 289.51 15.07 4.36 4.36 Total: -1.00 -34.78 289.51 -6.00 -40.78 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.77 Total: 2.50 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -0.36 Total: -6.41 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.20 Total: -38.81 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.34 Total: -23.48 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.08 Total: 21.06 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.78 -6.00 -40.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597457781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.422 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds