Wall clock time and date at job start Mon Mar 30 2020 03:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46941 * 2 1 4 4 C 1.50708 * 109.47044 * 240.00092 * 2 1 3 5 5 H 1.07998 * 119.99603 * 242.75238 * 4 2 1 6 6 C 1.37873 * 119.99785 * 62.74763 * 4 2 1 7 7 N 1.31513 * 120.00222 * 4.52373 * 6 4 2 8 8 Si 1.86802 * 119.99690 * 184.52078 * 6 4 2 9 9 H 1.48498 * 109.46949 * 60.00518 * 8 6 4 10 10 H 1.48500 * 109.47220 * 300.00239 * 8 6 4 11 11 H 1.48504 * 109.47067 * 180.02562 * 8 6 4 12 12 C 1.50702 * 109.46945 * 120.00240 * 2 1 3 13 13 O 1.21274 * 119.99901 * 101.63046 * 12 2 1 14 14 N 1.34776 * 119.99817 * 281.62502 * 12 2 1 15 15 C 1.46926 * 120.62951 * 3.58356 * 14 12 2 16 16 C 1.53195 * 108.77412 * 126.36874 * 15 14 12 17 17 C 1.53041 * 109.31285 * 54.63344 * 16 15 14 18 18 C 1.53036 * 109.53587 * 298.63500 * 17 16 15 19 19 C 1.53003 * 109.49753 * 181.34897 * 18 17 16 20 20 O 1.42897 * 109.50064 * 301.41307 * 18 17 16 21 21 C 1.46926 * 120.63002 * 183.30260 * 14 12 2 22 22 H 1.09000 * 109.46963 * 187.14389 * 1 2 3 23 23 H 1.08994 * 109.46911 * 307.14214 * 1 2 3 24 24 H 1.08998 * 109.47122 * 67.14634 * 1 2 3 25 25 H 0.97003 * 120.00077 * 5.39451 * 7 6 4 26 26 H 1.09002 * 109.58590 * 246.15073 * 15 14 12 27 27 H 1.08997 * 109.58866 * 6.43597 * 15 14 12 28 28 H 1.09001 * 109.49633 * 174.58327 * 16 15 14 29 29 H 1.08992 * 109.49591 * 294.67838 * 16 15 14 30 30 H 1.08998 * 109.46261 * 58.65505 * 17 16 15 31 31 H 1.09001 * 109.46034 * 178.61505 * 17 16 15 32 32 H 1.09008 * 109.47282 * 59.99747 * 19 18 17 33 33 H 1.08995 * 109.47184 * 179.97438 * 19 18 17 34 34 H 1.09000 * 109.47174 * 300.00187 * 19 18 17 35 35 H 0.96705 * 113.99729 * 300.00270 * 20 18 17 36 36 H 1.09001 * 109.58447 * 353.41793 * 21 14 12 37 37 H 1.08999 * 109.58683 * 113.84171 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6161 -1.6137 -1.1320 6 6 1.7466 -0.2072 -2.4819 7 7 1.1128 0.9390 -2.6008 8 14 2.2599 -1.1535 -4.0086 9 1 1.6130 -2.4901 -4.0032 10 1 3.7358 -1.3177 -4.0163 11 1 1.8393 -0.4044 -5.2200 12 6 2.0323 -0.7105 1.2305 13 8 2.4341 -1.8519 1.1500 14 7 2.0352 -0.0773 2.4202 15 6 1.4797 1.2768 2.5488 16 6 0.4395 1.2783 3.6735 17 6 1.0782 0.7366 4.9544 18 6 1.5406 -0.7043 4.7259 19 6 2.1486 -1.2563 6.0169 20 8 0.4234 -1.5087 4.3429 21 6 2.5882 -0.7304 3.6145 22 1 -0.3633 -1.0197 0.1278 23 1 -0.3633 0.6205 0.8192 24 1 -0.3633 0.3991 -0.9470 25 1 0.9156 1.4682 -1.8122 26 1 2.2787 1.9782 2.7893 27 1 1.0073 1.5686 1.6109 28 1 0.0894 2.2964 3.8440 29 1 -0.4023 0.6461 3.3912 30 1 1.9350 1.3547 5.2225 31 1 0.3471 0.7595 5.7626 32 1 1.3997 -1.2365 6.8088 33 1 2.4773 -2.2826 5.8539 34 1 3.0014 -0.6431 6.3081 35 1 -0.2846 -1.5374 5.0010 36 1 2.8447 -1.7636 3.3802 37 1 3.4795 -0.1961 3.9435 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597457781.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:25 Heat of formation + Delta-G solvation = -124.332509 kcal Electronic energy + Delta-G solvation = -18618.033166 eV Core-core repulsion = 15779.701784 eV Total energy + Delta-G solvation = -2838.331382 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.40933 -39.41615 -36.59807 -36.26192 -33.43146 -32.74660 -31.92425 -27.90597 -27.25317 -26.64987 -23.92095 -23.26767 -21.52882 -20.17756 -18.67077 -18.21198 -17.46961 -16.82043 -16.29588 -15.76481 -15.72003 -15.54463 -14.93946 -14.68618 -14.45639 -14.31730 -13.71021 -13.27593 -13.16841 -13.05075 -13.00524 -12.83873 -12.62516 -12.51672 -12.31103 -12.08188 -11.95782 -11.91883 -11.55116 -10.83011 -10.72785 -10.54653 -10.32442 -9.55341 -8.62350 -6.34451 1.51927 1.58727 1.80044 1.81867 2.12900 2.56441 3.14754 3.22508 3.71813 3.79797 3.88404 3.99602 4.06074 4.25342 4.39087 4.48942 4.52290 4.63992 4.68081 4.68270 4.77636 4.80523 4.84621 4.96781 4.99549 5.12890 5.16564 5.26344 5.36701 5.47511 5.65463 5.93460 6.22068 6.42274 6.69595 6.93636 7.32808 7.45019 8.75671 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.042932 B = 0.006591 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.037559 B = 4246.995063 C = 4560.306176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.016 3.984 3 H 0.037 0.963 4 C -0.607 4.607 5 H 0.035 0.965 6 C -0.018 4.018 7 N -0.925 5.925 8 Si 1.110 2.890 9 H -0.280 1.280 10 H -0.276 1.276 11 H -0.272 1.272 12 C 0.525 3.475 13 O -0.592 6.592 14 N -0.610 5.610 15 C 0.095 3.905 16 C -0.126 4.126 17 C -0.134 4.134 18 C 0.114 3.886 19 C -0.167 4.167 20 O -0.577 6.577 21 C 0.114 3.886 22 H 0.023 0.977 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.265 0.735 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.386 0.614 36 H 0.057 0.943 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 3.906 18.989 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.006 4.006 3 H 0.055 0.945 4 C -0.645 4.645 5 H 0.053 0.947 6 C -0.217 4.217 7 N -0.562 5.562 8 Si 0.932 3.068 9 H -0.206 1.206 10 H -0.202 1.202 11 H -0.197 1.197 12 C 0.316 3.684 13 O -0.473 6.473 14 N -0.343 5.343 15 C -0.027 4.027 16 C -0.164 4.164 17 C -0.172 4.172 18 C 0.073 3.927 19 C -0.225 4.225 20 O -0.385 6.385 21 C -0.009 4.009 22 H 0.042 0.958 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.235 0.765 36 H 0.075 0.925 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.822 3.241 16.781 17.111 hybrid contribution -0.154 -0.199 1.900 1.917 sum -0.977 3.042 18.681 18.953 Atomic orbital electron populations 1.21650 0.95527 0.99461 1.01278 1.18881 0.94733 0.95977 0.90978 0.94526 1.22123 1.37486 1.12054 0.92827 0.94671 1.27047 0.93677 0.97224 1.03782 1.70907 1.39047 1.12737 1.33522 0.83017 0.76646 0.74531 0.72570 1.20621 1.20187 1.19675 1.21321 0.75926 0.85901 0.85286 1.90478 1.49834 1.20556 1.86398 1.48113 1.61049 1.17563 1.07556 1.22055 0.97658 0.82022 1.00963 1.21824 0.97467 1.02785 0.94311 1.22178 1.02483 0.94696 0.97807 1.21579 0.86449 0.91313 0.93338 1.22362 1.02770 1.01499 0.95894 1.86712 1.30963 1.71694 1.49168 1.21632 0.96007 0.98591 0.84655 0.95794 0.92053 0.92611 0.92465 0.89778 0.90488 0.87970 0.92686 0.89132 0.88759 0.89723 0.93096 0.89790 0.76500 0.92456 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 8.55 71.98 0.62 -5.28 16 2 C 0.02 0.83 1.42 -12.28 -0.02 0.81 16 3 H 0.04 1.94 6.61 -2.39 -0.02 1.93 16 4 C -0.61 -37.36 8.33 25.60 0.21 -37.15 16 5 H 0.03 2.33 6.89 -2.91 -0.02 2.31 16 6 C -0.02 -1.08 5.22 84.65 0.44 -0.64 16 7 N -0.92 -55.27 12.72 21.45 0.27 -55.00 16 8 Si 1.11 53.15 29.91 68.60 2.05 55.20 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 C 0.53 26.73 6.87 87.66 0.60 27.33 16 13 O -0.59 -35.17 15.06 -3.01 -0.05 -35.22 16 14 N -0.61 -23.22 2.92 -819.75 -2.39 -25.62 16 15 C 0.09 2.77 5.83 86.36 0.50 3.27 16 16 C -0.13 -2.69 5.94 30.67 0.18 -2.51 16 17 C -0.13 -2.22 4.89 30.62 0.15 -2.07 16 18 C 0.11 2.60 1.00 -10.86 -0.01 2.59 16 19 C -0.17 -2.68 8.82 71.98 0.64 -2.05 16 20 O -0.58 -16.06 12.17 -148.98 -1.81 -17.88 16 21 C 0.11 3.61 5.36 86.22 0.46 4.07 16 22 H 0.02 1.19 8.13 -2.39 -0.02 1.18 16 23 H 0.06 2.47 6.40 -2.39 -0.02 2.45 16 24 H 0.05 2.89 5.91 -2.39 -0.01 2.88 16 25 H 0.26 15.50 6.03 -92.71 -0.56 14.94 16 26 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.08 2.54 4.43 -2.39 -0.01 2.53 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.41 7.61 -2.39 -0.02 1.40 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.39 6.80 9.05 -74.05 -0.67 6.13 16 36 H 0.06 2.26 7.00 -2.39 -0.02 2.24 16 37 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -79.30 289.51 2.46 -76.85 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.61 Total: 13.29 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 3.78 Total: -11.63 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -2.12 Total: -80.62 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -1.86 Total: -53.09 kcal Atomic # 14 Polarization: 53.15 SS G_CDS: 2.05 Total: 55.20 kcal Total: -79.30 2.46 -76.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597457781.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.484 kcal (2) G-P(sol) polarization free energy of solvation -79.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds