Wall clock time and date at job start Mon Mar 30 2020 03:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99732 * 2 1 4 4 C 1.52999 * 112.84825 * 294.62319 * 3 2 1 5 5 N 1.46500 * 109.47487 * 288.92318 * 4 3 2 6 6 C 1.34777 * 119.99863 * 175.19802 * 5 4 3 7 7 O 1.21278 * 120.00074 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99899 * 179.97438 * 6 5 4 9 9 H 1.09005 * 109.46643 * 60.00260 * 8 6 5 10 10 C 1.52999 * 109.47202 * 300.00384 * 8 6 5 11 11 C 1.50693 * 109.47107 * 180.02562 * 8 6 5 12 12 H 1.07999 * 120.00251 * 0.02562 * 11 8 6 13 13 C 1.37879 * 120.00040 * 180.02562 * 11 8 6 14 14 N 1.31516 * 120.00161 * 179.72476 * 13 11 8 15 15 Si 1.86801 * 120.00046 * 0.02562 * 13 11 8 16 16 H 1.48499 * 109.47145 * 269.72371 * 15 13 11 17 17 H 1.48506 * 109.46656 * 29.72477 * 15 13 11 18 18 H 1.48500 * 109.47416 * 149.72146 * 15 13 11 19 19 C 1.53779 * 113.69161 * 65.89521 * 3 2 1 20 20 C 1.53785 * 87.08053 * 89.12515 * 19 3 2 21 21 C 1.53782 * 113.60943 * 163.43285 * 3 2 1 22 22 H 1.08998 * 109.47188 * 296.26412 * 1 2 3 23 23 H 1.08997 * 109.47159 * 56.26857 * 1 2 3 24 24 H 1.09006 * 109.46991 * 176.26949 * 1 2 3 25 25 H 1.09005 * 109.47049 * 168.92000 * 4 3 2 26 26 H 1.09005 * 109.47021 * 48.92435 * 4 3 2 27 27 H 0.96998 * 119.99948 * 355.19963 * 5 4 3 28 28 H 1.09004 * 109.46937 * 59.99770 * 10 8 6 29 29 H 1.08998 * 109.47092 * 179.97438 * 10 8 6 30 30 H 1.08997 * 109.46901 * 299.99646 * 10 8 6 31 31 H 0.97004 * 120.00045 * 180.28007 * 14 13 11 32 32 H 1.08994 * 113.61640 * 203.67147 * 19 3 2 33 33 H 1.09006 * 113.61079 * 334.58190 * 19 3 2 34 34 H 1.08999 * 113.61463 * 270.88266 * 20 19 3 35 35 H 1.08996 * 113.69229 * 139.99115 * 20 19 3 36 36 H 1.08995 * 113.61600 * 25.34612 * 21 3 2 37 37 H 1.09005 * 113.60833 * 156.25401 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7151 2.0872 -1.2817 5 7 2.4719 1.5061 -2.3934 6 6 2.2950 1.9722 -3.6455 7 8 1.5090 2.8723 -3.8521 8 6 3.0739 1.3748 -4.7890 9 1 2.8447 0.3121 -4.8687 10 6 4.5719 1.5558 -4.5353 11 6 2.6947 2.0686 -6.0718 12 1 1.9632 2.8630 -6.0603 13 6 3.2817 1.6892 -7.2603 14 7 2.9468 2.2910 -8.3807 15 14 4.5465 0.3147 -7.2805 16 1 5.9030 0.8873 -7.0873 17 1 4.2531 -0.6440 -6.1849 18 1 4.4888 -0.3921 -8.5852 19 6 1.7361 2.1039 1.2854 20 6 3.0184 1.4751 1.8557 21 6 3.4945 1.3189 0.4018 22 1 -0.3633 0.4547 0.9215 23 1 -0.3633 0.5706 -0.8546 24 1 -0.3633 -1.0255 -0.0669 25 1 2.0081 3.1286 -1.1478 26 1 0.6488 2.0352 -1.5017 27 1 3.1003 0.7858 -2.2282 28 1 4.8464 1.0542 -3.6073 29 1 5.1352 1.1233 -5.3621 30 1 4.8010 2.6184 -4.4556 31 1 3.3568 2.0214 -9.2175 32 1 1.8017 3.1836 1.1512 33 1 0.8296 1.7953 1.8061 34 1 2.8503 0.5259 2.3645 35 1 3.6230 2.1678 2.4411 36 1 4.0076 0.3767 0.2092 37 1 4.0408 2.1841 0.0259 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597486198.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:49 Heat of formation + Delta-G solvation = -85.311761 kcal Electronic energy + Delta-G solvation = -17964.399897 eV Core-core repulsion = 15127.760581 eV Total energy + Delta-G solvation = -2836.639316 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.34621 -40.19147 -36.56778 -35.80783 -35.34183 -33.28466 -29.16744 -28.05930 -27.10509 -26.39774 -24.76225 -23.19777 -21.11991 -20.40985 -18.81845 -18.18625 -17.23497 -17.08883 -16.72059 -16.19985 -16.05437 -15.71815 -15.11494 -15.07263 -14.78854 -14.43779 -14.07252 -13.72489 -13.38214 -13.27431 -12.87652 -12.71585 -12.53359 -12.37387 -12.13805 -11.97687 -11.68450 -11.47153 -11.22708 -11.10724 -10.78888 -10.63341 -10.29209 -10.02586 -8.27322 -6.35189 1.33283 1.40283 1.51335 1.84845 2.27729 2.34664 2.70096 3.06258 3.59245 3.59419 3.66311 3.89598 4.13500 4.32913 4.41876 4.42874 4.47589 4.48518 4.61210 4.64298 4.78554 4.80785 4.84294 4.88907 5.01962 5.07652 5.08939 5.23108 5.39245 5.44609 5.52519 5.53907 6.21747 6.26412 6.66791 6.84462 7.26157 7.48488 8.90476 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.037927 B = 0.005711 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.087116 B = 4901.896621 C = 5067.737300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.372 6.372 3 C 0.073 3.927 4 C 0.105 3.895 5 N -0.715 5.715 6 C 0.526 3.474 7 O -0.588 6.588 8 C -0.009 4.009 9 H 0.066 0.934 10 C -0.138 4.138 11 C -0.522 4.522 12 H 0.029 0.971 13 C 0.006 3.994 14 N -0.953 5.953 15 Si 0.960 3.040 16 H -0.259 1.259 17 H -0.232 1.232 18 H -0.299 1.299 19 C -0.155 4.155 20 C -0.123 4.123 21 C -0.125 4.125 22 H 0.060 0.940 23 H 0.031 0.969 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.412 0.588 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.267 0.733 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 -6.647 23.302 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.291 6.291 3 C 0.032 3.968 4 C -0.019 4.019 5 N -0.368 5.368 6 C 0.315 3.685 7 O -0.467 6.467 8 C -0.031 4.031 9 H 0.083 0.917 10 C -0.195 4.195 11 C -0.560 4.560 12 H 0.047 0.953 13 C -0.190 4.190 14 N -0.593 5.593 15 Si 0.785 3.215 16 H -0.184 1.184 17 H -0.156 1.156 18 H -0.227 1.227 19 C -0.193 4.193 20 C -0.160 4.160 21 C -0.162 4.162 22 H 0.079 0.921 23 H 0.049 0.951 24 H 0.118 0.882 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.248 0.752 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.122 -6.156 23.004 23.907 hybrid contribution -0.035 -0.126 -0.915 0.924 sum 2.086 -6.283 22.089 23.059 Atomic orbital electron populations 1.22899 0.80292 1.03651 1.00547 1.87892 1.20741 1.25675 1.94746 1.22955 0.97433 0.84229 0.92144 1.21824 0.96137 0.97615 0.86342 1.45806 1.45207 1.39912 1.05882 1.21083 0.81508 0.81610 0.84347 1.90559 1.38819 1.32334 1.84985 1.19261 0.94364 0.97915 0.91544 0.91651 1.22003 0.94400 1.01818 1.01302 1.21096 1.24015 1.19338 0.91532 0.95307 1.26042 0.99201 0.99357 0.94423 1.70080 1.45473 1.44246 0.99518 0.85695 0.79012 0.79221 0.77578 1.18417 1.15564 1.22690 1.23508 1.00108 1.00661 0.94993 1.22711 0.96150 1.01574 0.95594 1.23059 0.92391 1.03825 0.96968 0.92123 0.95065 0.88212 0.91085 0.93196 0.75177 0.89655 0.93587 0.93338 0.92376 0.88272 0.90061 0.89615 0.89527 0.89942 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.63 113.37 1.21 1.63 16 2 O -0.37 -8.38 10.56 -148.98 -1.57 -9.95 16 3 C 0.07 1.49 0.77 -10.27 -0.01 1.49 16 4 C 0.10 2.95 5.12 86.38 0.44 3.39 16 5 N -0.71 -23.26 5.31 -463.05 -2.46 -25.72 16 6 C 0.53 23.73 7.15 87.66 0.63 24.35 16 7 O -0.59 -32.48 15.46 -3.02 -0.05 -32.53 16 8 C -0.01 -0.43 2.23 -12.29 -0.03 -0.46 16 9 H 0.07 2.90 7.20 -2.38 -0.02 2.89 16 10 C -0.14 -5.33 8.57 71.98 0.62 -4.71 16 11 C -0.52 -31.85 8.95 25.60 0.23 -31.62 16 12 H 0.03 2.07 7.00 -2.91 -0.02 2.05 16 13 C 0.01 0.36 5.45 84.65 0.46 0.82 16 14 N -0.95 -62.00 13.96 21.45 0.30 -61.70 16 15 Si 0.96 43.75 24.37 68.60 1.67 45.42 16 16 H -0.26 -10.94 6.88 99.48 0.68 -10.25 16 17 H -0.23 -9.25 6.52 99.48 0.65 -8.60 16 18 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 19 C -0.15 -2.40 7.21 31.12 0.22 -2.18 16 20 C -0.12 -1.66 8.02 31.12 0.25 -1.41 16 21 C -0.13 -2.08 6.91 31.12 0.22 -1.87 16 22 H 0.06 0.92 6.84 -2.39 -0.02 0.90 16 23 H 0.03 0.70 6.48 -2.39 -0.02 0.68 16 24 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 25 H 0.07 2.01 7.95 -2.38 -0.02 1.99 16 26 H 0.05 1.58 6.48 -2.38 -0.02 1.56 16 27 H 0.41 11.03 7.52 -92.71 -0.70 10.33 16 28 H 0.08 2.41 7.56 -2.38 -0.02 2.39 16 29 H 0.05 1.81 3.28 -2.39 -0.01 1.80 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 32 H 0.10 1.43 7.96 -2.39 -0.02 1.41 16 33 H 0.08 1.15 6.81 -2.38 -0.02 1.14 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.63 8.10 -2.38 -0.02 1.61 16 Total: -1.00 -78.41 293.35 2.42 -75.99 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.29 Total: 19.06 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 4.23 Total: -10.57 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -2.16 Total: -87.42 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -1.62 Total: -42.48 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.67 Total: 45.42 kcal Total: -78.41 2.42 -75.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597486198.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.319 kcal (2) G-P(sol) polarization free energy of solvation -78.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds