Wall clock time and date at job start Mon Mar 30 2020 03:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46972 * 2 1 4 4 C 1.50702 * 109.46849 * 240.00301 * 2 1 3 5 5 H 1.08002 * 119.99932 * 239.99824 * 4 2 1 6 6 C 1.37879 * 119.99890 * 60.00244 * 4 2 1 7 7 N 1.31517 * 119.99971 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99726 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47217 * 89.99756 * 8 6 4 10 10 H 1.48500 * 109.46922 * 209.99653 * 8 6 4 11 11 H 1.48492 * 109.47142 * 329.99675 * 8 6 4 12 12 C 1.50695 * 109.47331 * 120.00266 * 2 1 3 13 13 O 1.21283 * 119.99936 * 119.99866 * 12 2 1 14 14 N 1.34781 * 119.99807 * 299.99998 * 12 2 1 15 15 C 1.46504 * 119.99668 * 179.97438 * 14 12 2 16 16 C 1.52995 * 109.47033 * 174.96786 * 15 14 12 17 17 C 1.53003 * 112.85012 * 294.78736 * 16 15 14 18 18 O 1.42896 * 109.46939 * 298.57009 * 17 16 15 19 19 C 1.53778 * 113.61556 * 163.59186 * 16 15 14 20 20 C 1.53956 * 87.01961 * 220.04853 * 19 16 15 21 21 C 1.53782 * 113.61303 * 65.98103 * 16 15 14 22 22 H 1.09007 * 109.46885 * 299.99748 * 1 2 3 23 23 H 1.08994 * 109.47076 * 59.99171 * 1 2 3 24 24 H 1.08992 * 109.46964 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99358 * 179.97438 * 7 6 4 26 26 H 0.96995 * 120.00160 * 0.02562 * 14 12 2 27 27 H 1.08999 * 109.46949 * 294.96878 * 15 14 12 28 28 H 1.09001 * 109.47205 * 54.96723 * 15 14 12 29 29 H 1.09000 * 109.46782 * 58.57418 * 17 16 15 30 30 H 1.08998 * 109.47003 * 178.56958 * 17 16 15 31 31 H 0.96701 * 114.00152 * 179.97438 * 18 17 16 32 32 H 1.09003 * 113.61191 * 334.56807 * 19 16 15 33 33 H 1.08999 * 113.61527 * 105.46944 * 19 16 15 34 34 H 1.09003 * 113.53964 * 270.80757 * 20 19 16 35 35 H 1.09004 * 113.74240 * 139.94114 * 20 19 16 36 36 H 1.08993 * 113.61859 * 254.52539 * 21 16 15 37 37 H 1.08997 * 113.61678 * 25.35571 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.3447 -2.1613 -4.4125 10 1 2.4871 -0.1399 -5.1121 11 1 3.6307 -1.7563 -3.7121 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7068 -0.2500 2.4545 15 6 2.1948 -0.9410 3.6507 16 6 1.7909 -0.1505 4.8967 17 6 2.4643 1.2212 4.9744 18 8 3.8819 1.0528 5.0387 19 6 1.8916 -0.9608 6.1998 20 6 0.5775 -0.2829 6.6285 21 6 0.2718 -0.1050 5.1318 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7087 1.1615 -3.4844 26 1 1.1488 0.5384 2.5436 27 1 1.7593 -1.9392 3.6966 28 1 3.2810 -1.0202 3.6069 29 1 2.2073 1.8027 4.0890 30 1 2.1198 1.7451 5.8659 31 1 4.3747 1.8832 5.0895 32 1 1.8001 -2.0370 6.0529 33 1 2.7466 -0.6882 6.8185 34 1 0.7257 0.6579 7.1587 35 1 -0.1153 -0.9519 7.1391 36 1 -0.1790 0.8573 4.8897 37 1 -0.2636 -0.9461 4.6913 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597500531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:44 Heat of formation + Delta-G solvation = -81.411150 kcal Electronic energy + Delta-G solvation = -17840.157471 eV Core-core repulsion = 15003.687298 eV Total energy + Delta-G solvation = -2836.470173 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.06413 -38.30456 -36.10125 -33.72573 -33.59128 -30.53092 -28.47113 -26.16553 -25.62628 -25.07698 -22.82574 -21.66460 -19.30699 -18.38560 -17.42731 -16.46869 -16.09846 -15.52788 -15.14168 -14.89590 -14.35586 -14.03242 -13.77963 -13.28189 -12.93056 -12.77244 -12.42225 -12.29234 -11.71618 -11.57648 -11.32556 -10.97955 -10.71300 -10.65597 -10.58475 -10.44750 -10.25217 -10.18435 -9.96190 -9.84641 -8.91983 -8.52692 -8.28805 -8.25124 -5.98659 -4.01136 3.37024 3.42350 3.50020 3.83160 3.86010 4.16402 4.47691 4.52888 4.56121 4.68304 4.93535 5.07505 5.25083 5.34602 5.43319 5.50363 5.67548 5.70243 5.79467 5.90675 5.96261 6.07994 6.27943 6.33760 6.45346 6.66460 6.87884 6.98538 7.21868 7.53265 7.57172 7.80674 8.05175 8.22449 8.55072 9.08336 9.36328 9.64421 11.09045 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041625 B = 0.005229 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.516110 B = 5353.232778 C = 5478.856767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.050 0.950 4 C -0.498 4.498 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.548 6.548 14 N -0.743 5.743 15 C 0.140 3.860 16 C -0.095 4.095 17 C 0.101 3.899 18 O -0.566 6.566 19 C -0.121 4.121 20 C -0.143 4.143 21 C -0.128 4.128 22 H 0.011 0.989 23 H 0.092 0.908 24 H 0.030 0.970 25 H 0.260 0.740 26 H 0.392 0.608 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.378 0.622 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 3.172 17.369 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.536 4.536 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.308 3.692 13 O -0.424 6.424 14 N -0.397 5.397 15 C 0.016 3.984 16 C -0.095 4.095 17 C 0.023 3.977 18 O -0.371 6.371 19 C -0.159 4.159 20 C -0.180 4.180 21 C -0.165 4.165 22 H 0.030 0.970 23 H 0.111 0.889 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.225 0.775 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.224 0.776 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.374 1.911 17.101 17.262 hybrid contribution 0.106 0.627 -0.743 0.978 sum -1.268 2.538 16.358 16.602 Atomic orbital electron populations 1.21731 0.96640 0.99750 1.00791 1.18862 0.94072 0.96764 0.89559 0.93194 1.21167 1.30736 1.12702 0.89042 0.90819 1.24953 0.95193 0.95087 0.99092 1.69878 1.37332 1.23175 1.23419 0.86454 0.79474 0.79228 0.82075 1.20705 1.21336 1.19753 1.21918 0.78490 0.84324 0.84509 1.90526 1.38029 1.27033 1.86821 1.46215 1.55260 1.32599 1.05664 1.21053 0.99954 0.94518 0.82902 1.22076 0.95929 0.95531 0.95981 1.21843 0.81194 0.95091 0.99534 1.86490 1.17777 1.35421 1.97378 1.22877 0.97856 0.99511 0.95695 1.22890 0.97850 1.00856 0.96409 1.22951 0.94448 1.02859 0.96256 0.97021 0.88919 0.95051 0.93057 0.77465 0.92609 0.91275 0.93123 0.93620 0.77550 0.89799 0.90923 0.90388 0.91357 0.91197 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.73 2.64 -92.92 -0.25 0.48 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.49 8.37 -34.44 -0.29 -14.78 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.92 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.57 11.32 55.43 0.63 -24.94 16 8 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 12.32 7.15 -10.99 -0.08 12.24 16 13 O -0.55 -15.04 15.45 5.56 0.09 -14.95 16 14 N -0.74 -13.52 5.14 -60.29 -0.31 -13.83 16 15 C 0.14 2.27 4.91 -4.04 -0.02 2.25 16 16 C -0.09 -1.13 0.63 -153.70 -0.10 -1.22 16 17 C 0.10 1.11 6.17 37.16 0.23 1.34 16 18 O -0.57 -6.77 13.18 -35.23 -0.46 -7.23 16 19 C -0.12 -1.27 7.21 -25.83 -0.19 -1.46 16 20 C -0.14 -1.25 7.74 -25.82 -0.20 -1.45 16 21 C -0.13 -1.30 6.96 -25.92 -0.18 -1.48 16 22 H 0.01 0.21 7.56 -51.92 -0.39 -0.18 16 23 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.39 6.19 7.26 -40.82 -0.30 5.90 16 27 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 28 H 0.07 1.29 7.81 -51.93 -0.41 0.88 16 29 H 0.05 0.57 7.57 -51.93 -0.39 0.17 16 30 H 0.05 0.40 7.30 -51.93 -0.38 0.03 16 31 H 0.38 2.83 9.12 45.56 0.42 3.24 16 32 H 0.08 0.88 8.05 -51.93 -0.42 0.46 16 33 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.08 0.61 7.60 -51.93 -0.39 0.22 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 302.10 15.07 4.55 4.55 Total: -1.00 -33.13 302.10 -6.38 -39.51 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.02 Total: 5.00 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.83 Total: -5.30 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.32 Total: -38.76 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.38 Total: -22.18 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.13 -6.38 -39.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597500531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.902 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds