Wall clock time and date at job start Mon Mar 30 2020 03:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46972 * 2 1 4 4 C 1.50702 * 109.46849 * 240.00301 * 2 1 3 5 5 H 1.08002 * 119.99932 * 239.99824 * 4 2 1 6 6 C 1.37879 * 119.99890 * 60.00244 * 4 2 1 7 7 N 1.31517 * 119.99971 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99726 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47217 * 89.99756 * 8 6 4 10 10 H 1.48500 * 109.46922 * 209.99653 * 8 6 4 11 11 H 1.48492 * 109.47142 * 329.99675 * 8 6 4 12 12 C 1.50695 * 109.47331 * 120.00266 * 2 1 3 13 13 O 1.21283 * 119.99936 * 119.99866 * 12 2 1 14 14 N 1.34781 * 119.99807 * 299.99998 * 12 2 1 15 15 C 1.46504 * 119.99668 * 179.97438 * 14 12 2 16 16 C 1.52995 * 109.47033 * 174.96786 * 15 14 12 17 17 C 1.53003 * 112.85012 * 294.78736 * 16 15 14 18 18 O 1.42896 * 109.46939 * 298.57009 * 17 16 15 19 19 C 1.53778 * 113.61556 * 163.59186 * 16 15 14 20 20 C 1.53956 * 87.01961 * 220.04853 * 19 16 15 21 21 C 1.53782 * 113.61303 * 65.98103 * 16 15 14 22 22 H 1.09007 * 109.46885 * 299.99748 * 1 2 3 23 23 H 1.08994 * 109.47076 * 59.99171 * 1 2 3 24 24 H 1.08992 * 109.46964 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99358 * 179.97438 * 7 6 4 26 26 H 0.96995 * 120.00160 * 0.02562 * 14 12 2 27 27 H 1.08999 * 109.46949 * 294.96878 * 15 14 12 28 28 H 1.09001 * 109.47205 * 54.96723 * 15 14 12 29 29 H 1.09000 * 109.46782 * 58.57418 * 17 16 15 30 30 H 1.08998 * 109.47003 * 178.56958 * 17 16 15 31 31 H 0.96701 * 114.00152 * 179.97438 * 18 17 16 32 32 H 1.09003 * 113.61191 * 334.56807 * 19 16 15 33 33 H 1.08999 * 113.61527 * 105.46944 * 19 16 15 34 34 H 1.09003 * 113.53964 * 270.80757 * 20 19 16 35 35 H 1.09004 * 113.74240 * 139.94114 * 20 19 16 36 36 H 1.08993 * 113.61859 * 254.52539 * 21 16 15 37 37 H 1.08997 * 113.61678 * 25.35571 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.3447 -2.1613 -4.4125 10 1 2.4871 -0.1399 -5.1121 11 1 3.6307 -1.7563 -3.7121 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7068 -0.2500 2.4545 15 6 2.1948 -0.9410 3.6507 16 6 1.7909 -0.1505 4.8967 17 6 2.4643 1.2212 4.9744 18 8 3.8819 1.0528 5.0387 19 6 1.8916 -0.9608 6.1998 20 6 0.5775 -0.2829 6.6285 21 6 0.2718 -0.1050 5.1318 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7087 1.1615 -3.4844 26 1 1.1488 0.5384 2.5436 27 1 1.7593 -1.9392 3.6966 28 1 3.2810 -1.0202 3.6069 29 1 2.2073 1.8027 4.0890 30 1 2.1198 1.7451 5.8659 31 1 4.3747 1.8832 5.0895 32 1 1.8001 -2.0370 6.0529 33 1 2.7466 -0.6882 6.8185 34 1 0.7257 0.6579 7.1587 35 1 -0.1153 -0.9519 7.1391 36 1 -0.1790 0.8573 4.8897 37 1 -0.2636 -0.9461 4.6913 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597500531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:44 Heat of formation + Delta-G solvation = -106.362071 kcal Electronic energy + Delta-G solvation = -17841.239424 eV Core-core repulsion = 15003.687298 eV Total energy + Delta-G solvation = -2837.552126 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17446 -39.97753 -36.96199 -35.78047 -35.27382 -32.54724 -29.63177 -27.30451 -27.12420 -26.52081 -24.40054 -22.91855 -21.11261 -19.32077 -18.41178 -18.25013 -17.91296 -16.83099 -16.56803 -16.36897 -16.02989 -15.55060 -14.85476 -14.65337 -14.53682 -14.04897 -13.99310 -13.44001 -13.24194 -12.97257 -12.81833 -12.59428 -12.56576 -12.34940 -12.19662 -12.02206 -11.53828 -11.24299 -11.11962 -11.04212 -10.79169 -10.58972 -10.27982 -9.93402 -8.15309 -6.25534 1.40461 1.40772 1.53201 1.94732 2.35333 2.53324 3.13965 3.22708 3.57604 3.67364 3.90592 4.01193 4.20175 4.35630 4.49721 4.57989 4.62924 4.75101 4.78588 4.88334 4.88570 4.94444 4.96306 5.02882 5.13135 5.18177 5.35796 5.49751 5.53206 5.62033 5.75419 5.94602 6.21918 6.75031 6.86789 6.92730 7.40068 7.56364 8.90513 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041625 B = 0.005229 C = 0.005109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.516110 B = 5353.232778 C = 5478.856767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.025 3.975 3 H 0.040 0.960 4 C -0.530 4.530 5 H 0.045 0.955 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.281 1.281 12 C 0.518 3.482 13 O -0.593 6.593 14 N -0.718 5.718 15 C 0.142 3.858 16 C -0.099 4.099 17 C 0.100 3.900 18 O -0.590 6.590 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.126 4.126 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.022 0.978 25 H 0.265 0.735 26 H 0.407 0.593 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.395 0.605 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.725 4.206 18.645 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 H 0.058 0.942 4 C -0.569 4.569 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.198 1.198 11 H -0.206 1.206 12 C 0.307 3.693 13 O -0.473 6.473 14 N -0.371 5.371 15 C 0.018 3.982 16 C -0.099 4.099 17 C 0.022 3.978 18 O -0.398 6.398 19 C -0.161 4.161 20 C -0.164 4.164 21 C -0.164 4.164 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.041 0.959 25 H 0.074 0.926 26 H 0.243 0.757 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.245 0.755 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.474 3.000 18.416 18.822 hybrid contribution 0.471 0.329 -1.103 1.243 sum -2.003 3.329 17.314 17.745 Atomic orbital electron populations 1.21545 0.94838 0.99407 1.01784 1.18806 0.95489 0.95800 0.89558 0.94187 1.21284 1.31623 1.12702 0.91262 0.93647 1.25589 0.95189 0.95755 1.01358 1.69945 1.37188 1.23495 1.24318 0.85592 0.78578 0.78581 0.79105 1.19888 1.19766 1.20589 1.21612 0.78185 0.83723 0.85769 1.90501 1.40184 1.29017 1.87625 1.45906 1.54007 1.32441 1.04718 1.21142 0.98136 0.95057 0.83840 1.22199 0.97700 0.95986 0.94061 1.21928 0.80762 0.94332 1.00776 1.86450 1.18624 1.37308 1.97463 1.22903 0.99191 0.99260 0.94786 1.22843 0.96428 1.01582 0.95511 1.22960 0.92631 1.03385 0.97411 0.92841 0.90990 0.95928 0.92556 0.75661 0.93341 0.94073 0.93526 0.90607 0.75515 0.90327 0.90928 0.88657 0.90180 0.89674 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.87 71.98 0.64 -4.79 16 2 C 0.02 1.28 2.64 -12.29 -0.03 1.24 16 3 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.53 -31.62 8.37 25.60 0.21 -31.41 16 5 H 0.05 2.92 6.75 -2.91 -0.02 2.90 16 6 C 0.02 1.15 5.30 84.65 0.45 1.60 16 7 N -0.91 -51.55 11.32 21.45 0.24 -51.30 16 8 Si 0.96 45.73 29.54 68.60 2.03 47.75 16 9 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 12 C 0.52 25.05 7.15 87.65 0.63 25.67 16 13 O -0.59 -33.75 15.45 -3.04 -0.05 -33.79 16 14 N -0.72 -25.78 5.14 -463.06 -2.38 -28.16 16 15 C 0.14 4.59 4.91 86.38 0.42 5.01 16 16 C -0.10 -2.18 0.63 -51.66 -0.03 -2.21 16 17 C 0.10 1.94 6.17 71.98 0.44 2.38 16 18 O -0.59 -13.34 13.18 -148.98 -1.96 -15.30 16 19 C -0.12 -2.34 7.21 31.18 0.22 -2.12 16 20 C -0.13 -1.77 7.74 31.18 0.24 -1.53 16 21 C -0.13 -2.20 6.96 31.12 0.22 -1.99 16 22 H 0.05 1.96 7.56 -2.38 -0.02 1.94 16 23 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 24 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 26 H 0.41 12.15 7.26 -92.71 -0.67 11.48 16 27 H 0.05 1.64 8.07 -2.39 -0.02 1.62 16 28 H 0.04 1.57 7.81 -2.39 -0.02 1.55 16 29 H 0.05 0.93 7.57 -2.39 -0.02 0.91 16 30 H 0.08 1.05 7.30 -2.39 -0.02 1.03 16 31 H 0.40 5.33 9.12 -74.06 -0.68 4.65 16 32 H 0.08 1.56 8.05 -2.39 -0.02 1.54 16 33 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 34 H 0.09 1.05 7.60 -2.39 -0.02 1.04 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 Total: -1.00 -72.59 302.10 1.02 -71.57 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -0.28 Total: 17.36 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 3.41 Total: -8.13 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.14 Total: -79.46 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -2.01 Total: -49.09 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -72.59 1.02 -71.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597500531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.793 kcal (2) G-P(sol) polarization free energy of solvation -72.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds