Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46976 * 89.99956 * 8 6 4 10 10 H 1.48495 * 109.47491 * 209.99845 * 8 6 4 11 11 H 1.48503 * 109.47229 * 330.00587 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.52997 * 109.47555 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47273 * 179.97438 * 16 15 14 18 18 C 1.53777 * 113.61657 * 274.13662 * 17 16 15 19 19 C 1.53957 * 87.02216 * 220.05095 * 18 17 16 20 20 O 1.42892 * 113.74283 * 139.94437 * 19 18 17 21 21 C 1.53781 * 87.10945 * 25.36489 * 19 18 17 22 22 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 23 23 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 25 25 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 27 27 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 28 28 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 29 29 H 1.08998 * 109.47382 * 300.00439 * 16 15 14 30 30 H 1.09005 * 109.46800 * 60.00640 * 16 15 14 31 31 H 1.08997 * 112.84630 * 45.33793 * 17 16 15 32 32 H 1.08998 * 113.61464 * 334.57054 * 18 17 16 33 33 H 1.09003 * 113.61095 * 105.47401 * 18 17 16 34 34 H 1.09003 * 113.53331 * 270.81731 * 19 18 17 35 35 H 0.96705 * 113.99697 * 82.40522 * 20 19 18 36 36 H 1.09003 * 113.61392 * 220.09307 * 21 19 18 37 37 H 1.08997 * 113.61635 * 89.19195 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5459 4.4123 10 1 1.3432 -0.9493 5.1120 11 1 2.4860 -2.5662 3.7118 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6715 -0.2289 -4.9000 17 6 2.1769 -0.9534 -6.1492 18 6 3.5762 -0.5019 -6.5995 19 6 3.0508 -0.5869 -8.0442 20 8 3.5031 0.4767 -8.8844 21 6 1.6452 -0.3584 -7.4638 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.7087 1.1612 3.4844 26 1 1.1446 0.5355 -2.5436 27 1 3.2755 -0.9477 -3.6550 28 1 1.8218 -1.9748 -3.6465 29 1 0.5815 -0.2280 -4.8960 30 1 2.0357 0.7985 -4.9040 31 1 2.0672 -2.0359 -6.0840 32 1 3.8301 0.5108 -6.2862 33 1 4.3610 -1.2245 -6.3761 34 1 3.1815 -1.5695 -8.4977 35 1 4.3867 0.3386 -9.2524 36 1 0.8734 -0.9653 -7.9372 37 1 1.3701 0.6936 -7.3873 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597572093.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = -87.678650 kcal Electronic energy + Delta-G solvation = -17028.043145 eV Core-core repulsion = 14191.301193 eV Total energy + Delta-G solvation = -2836.741952 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.71012 -38.63881 -35.80703 -34.17218 -33.67769 -30.93325 -29.60654 -25.98233 -25.11556 -24.70920 -22.34325 -21.43128 -19.85238 -19.16181 -17.67586 -16.32464 -15.97726 -15.71067 -15.19100 -14.94926 -14.50766 -14.30909 -13.90339 -13.12634 -12.89373 -12.65515 -12.49690 -12.18615 -11.80380 -11.62269 -11.34849 -11.07667 -10.97354 -10.85490 -10.67829 -10.66673 -10.38783 -10.19687 -9.99589 -9.91572 -8.93933 -8.56397 -8.36999 -8.28202 -6.00096 -4.02965 3.35786 3.41217 3.48494 3.79860 3.83041 4.08223 4.30138 4.38742 4.49920 4.58068 4.65512 5.04422 5.27326 5.32980 5.34434 5.46532 5.53200 5.56896 5.68401 5.76780 5.92367 6.04584 6.15778 6.27663 6.40273 6.65660 6.86767 6.96926 7.16135 7.36812 7.51836 7.79377 8.03033 8.19848 8.50975 9.06304 9.30722 9.62581 11.07600 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.061161 B = 0.003764 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.698062 B = 7436.418692 C = 7641.155648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.549 6.549 14 N -0.748 5.748 15 C 0.121 3.879 16 C -0.118 4.118 17 C -0.105 4.105 18 C -0.165 4.165 19 C 0.073 3.927 20 O -0.562 6.562 21 C -0.124 4.124 22 H 0.012 0.988 23 H 0.030 0.970 24 H 0.093 0.907 25 H 0.260 0.740 26 H 0.395 0.605 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.376 0.624 36 H 0.072 0.928 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 -0.365 -19.511 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.307 3.693 13 O -0.425 6.425 14 N -0.403 5.403 15 C -0.003 4.003 16 C -0.156 4.156 17 C -0.124 4.124 18 C -0.203 4.203 19 C 0.014 3.986 20 O -0.367 6.367 21 C -0.161 4.161 22 H 0.031 0.969 23 H 0.050 0.950 24 H 0.111 0.889 25 H 0.070 0.930 26 H 0.229 0.771 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.223 0.777 36 H 0.091 0.909 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.991 -0.751 -19.117 19.157 hybrid contribution 0.579 -0.294 0.620 0.897 sum 1.569 -1.045 -18.497 18.593 Atomic orbital electron populations 1.21733 0.96573 0.99763 1.00887 1.18873 0.94133 0.96830 0.89475 0.93066 1.21163 1.30834 1.12781 0.89059 0.90812 1.24956 0.95143 0.95108 0.99112 1.69877 1.37173 1.23204 1.23476 0.86452 0.78426 0.80266 0.82067 1.20683 1.21314 1.19759 1.21962 0.78442 0.84279 0.84570 1.90522 1.38109 1.26967 1.86865 1.46300 1.55546 1.32667 1.05760 1.21152 0.99003 0.96156 0.83986 1.21733 1.01237 0.99584 0.93010 1.22244 0.96187 1.00337 0.93625 1.23795 0.97268 1.02688 0.96549 1.23422 0.96196 0.90139 0.88873 1.86528 1.37600 1.45308 1.67303 1.23118 0.95294 1.02458 0.95275 0.96929 0.95050 0.88879 0.93005 0.77127 0.92359 0.92402 0.91082 0.91177 0.88689 0.89115 0.91187 0.90247 0.77673 0.90921 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.86 37.16 0.33 -2.74 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.46 8.37 -34.44 -0.29 -14.75 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.52 11.32 55.43 0.63 -24.89 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.52 12.11 7.15 -10.98 -0.08 12.03 16 13 O -0.55 -14.72 15.46 5.55 0.09 -14.63 16 14 N -0.75 -13.24 5.44 -60.29 -0.33 -13.57 16 15 C 0.12 1.79 5.67 -4.04 -0.02 1.77 16 16 C -0.12 -1.27 5.15 -26.73 -0.14 -1.40 16 17 C -0.10 -0.97 3.64 -89.81 -0.33 -1.30 16 18 C -0.17 -1.49 7.48 -25.83 -0.19 -1.68 16 19 C 0.07 0.60 5.21 -25.83 -0.13 0.47 16 20 O -0.56 -5.05 13.68 -35.23 -0.48 -5.54 16 21 C -0.12 -1.08 7.47 -25.91 -0.19 -1.27 16 22 H 0.01 0.23 7.55 -51.93 -0.39 -0.16 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.40 6.03 7.88 -40.82 -0.32 5.71 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.90 7.92 -51.93 -0.41 0.48 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.38 1.77 9.12 45.56 0.42 2.18 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 306.56 15.07 4.62 4.62 Total: -1.00 -33.03 306.56 -7.03 -40.06 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.15 Total: 3.77 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.39 Total: -6.89 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.30 Total: -38.47 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.40 Total: -20.17 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.03 -7.03 -40.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597572093.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.621 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds