Wall clock time and date at job start Mon Mar 30 2020 03:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46943 * 2 1 4 4 C 1.50696 * 109.47154 * 120.00343 * 2 1 3 5 5 H 1.07999 * 119.99822 * 119.99509 * 4 2 1 6 6 C 1.37876 * 120.00339 * 299.99975 * 4 2 1 7 7 N 1.31514 * 119.99769 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46755 * 89.99832 * 8 6 4 10 10 H 1.48499 * 109.47293 * 209.99842 * 8 6 4 11 11 H 1.48500 * 109.46738 * 330.00088 * 8 6 4 12 12 C 1.50702 * 109.46793 * 240.00684 * 2 1 3 13 13 O 1.21282 * 119.99684 * 240.00017 * 12 2 1 14 14 N 1.34769 * 120.00466 * 59.99589 * 12 2 1 15 15 C 1.46500 * 120.00241 * 179.97438 * 14 12 2 16 16 C 1.53006 * 109.46998 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.46626 * 179.97438 * 16 15 14 18 18 O 1.42903 * 112.85048 * 53.80778 * 17 16 15 19 19 C 1.53777 * 113.61918 * 282.49773 * 17 16 15 20 20 C 1.53783 * 87.08203 * 220.02411 * 19 17 16 21 21 C 1.53780 * 87.08238 * 25.43108 * 20 19 17 22 22 H 1.09002 * 109.47288 * 59.99455 * 1 2 3 23 23 H 1.09000 * 109.47188 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46630 * 299.99691 * 1 2 3 25 25 H 0.97000 * 120.00540 * 180.02562 * 7 6 4 26 26 H 0.97010 * 119.99849 * 0.02562 * 14 12 2 27 27 H 1.09000 * 109.47175 * 60.00333 * 15 14 12 28 28 H 1.09001 * 109.47297 * 299.99840 * 15 14 12 29 29 H 1.08993 * 109.46955 * 300.00226 * 16 15 14 30 30 H 1.09000 * 109.47050 * 60.00054 * 16 15 14 31 31 H 0.96700 * 114.00188 * 309.66277 * 18 17 16 32 32 H 1.09003 * 113.61615 * 334.56919 * 19 17 16 33 33 H 1.08993 * 113.61748 * 105.47374 * 19 17 16 34 34 H 1.09001 * 113.61309 * 270.88441 * 20 19 17 35 35 H 1.08998 * 113.61410 * 139.98364 * 20 19 17 36 36 H 1.09000 * 113.61483 * 220.02166 * 21 20 19 37 37 H 1.08992 * 113.61422 * 89.11757 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9437 0.8300 2.6035 8 14 2.3215 -1.1206 4.0079 9 1 3.6298 -0.5462 4.4122 10 1 1.3433 -0.9496 5.1120 11 1 2.4859 -2.5665 3.7117 12 6 2.0323 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.1955 -0.9400 -3.6508 16 6 1.6857 -0.2183 -4.9000 17 6 2.1967 -0.9388 -6.1493 18 8 1.8811 -2.3326 -6.1542 19 6 3.6690 -0.6376 -6.4754 20 6 3.2503 -0.5918 -7.9544 21 6 1.8410 -0.2221 -7.4626 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 0.7096 1.1616 3.4844 26 1 1.1493 0.5391 -2.5435 27 1 1.8325 -1.9678 -3.6511 28 1 3.2855 -0.9395 -3.6508 29 1 0.5958 -0.2184 -4.9003 30 1 2.0490 0.8093 -4.8996 31 1 2.1239 -2.7937 -5.3396 32 1 4.0143 0.3216 -6.0895 33 1 4.3456 -1.4586 -6.2384 34 1 3.2990 -1.5603 -8.4521 35 1 3.7370 0.2016 -8.5216 36 1 1.0418 -0.7078 -8.0224 37 1 1.6865 0.8506 -7.3465 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597634808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:48 Heat of formation + Delta-G solvation = -105.880105 kcal Electronic energy + Delta-G solvation = -17402.029341 eV Core-core repulsion = 14564.498115 eV Total energy + Delta-G solvation = -2837.531226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.94352 -40.25904 -36.11294 -35.74209 -35.52185 -32.81189 -31.15884 -27.21371 -26.80986 -26.06968 -24.11282 -22.60700 -21.13091 -20.57327 -18.37862 -17.83979 -17.58374 -16.83535 -16.55337 -16.30049 -15.87218 -15.75839 -15.13039 -14.68503 -14.50805 -14.27997 -13.52981 -13.36851 -13.14308 -12.97139 -12.78593 -12.69266 -12.58248 -12.27585 -12.14131 -12.04218 -11.99647 -11.74513 -11.13704 -11.02871 -10.68004 -10.55409 -10.26517 -9.97109 -8.15167 -6.25503 1.40822 1.41538 1.53499 1.92946 2.34316 2.52619 3.11416 3.14503 3.52647 3.66976 3.91830 3.92644 4.14603 4.20504 4.38036 4.49799 4.65915 4.75499 4.81657 4.85201 4.93185 4.94929 5.01247 5.05742 5.06138 5.16180 5.35862 5.45447 5.50174 5.59632 5.75530 5.94561 6.22072 6.70733 6.74205 6.86614 7.40114 7.54648 8.90653 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.056034 B = 0.004270 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.572823 B = 6556.204547 C = 6757.912163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.022 3.978 3 H 0.043 0.957 4 C -0.530 4.530 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.519 3.481 13 O -0.589 6.589 14 N -0.724 5.724 15 C 0.117 3.883 16 C -0.136 4.136 17 C 0.104 3.896 18 O -0.560 6.560 19 C -0.169 4.169 20 C -0.133 4.133 21 C -0.123 4.123 22 H 0.053 0.947 23 H 0.021 0.979 24 H 0.070 0.930 25 H 0.265 0.735 26 H 0.411 0.589 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.386 0.614 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.348 1.987 -18.749 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.001 3.999 3 H 0.060 0.940 4 C -0.569 4.569 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.308 3.692 13 O -0.469 6.469 14 N -0.378 5.378 15 C -0.007 4.007 16 C -0.173 4.173 17 C 0.062 3.938 18 O -0.369 6.369 19 C -0.206 4.206 20 C -0.171 4.171 21 C -0.160 4.160 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.247 0.753 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.236 0.764 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.542 1.538 -19.140 19.210 hybrid contribution 0.339 -0.395 1.608 1.690 sum 0.882 1.143 -17.532 17.591 Atomic orbital electron populations 1.21555 0.95005 0.99372 1.01782 1.18829 0.95393 0.96007 0.89703 0.93960 1.21300 1.31592 1.12742 0.91220 0.93418 1.25592 0.95177 0.95766 1.01414 1.69943 1.37194 1.23587 1.24316 0.85602 0.78410 0.78777 0.79145 1.19972 1.19917 1.20412 1.21555 0.78202 0.83693 0.85736 1.90505 1.40025 1.28721 1.87612 1.45975 1.54407 1.32633 1.04769 1.21278 0.98773 0.96381 0.84275 1.22276 1.02477 1.00811 0.91782 1.22301 0.95251 0.81598 0.94633 1.86422 1.85730 1.20643 1.44067 1.23681 0.96438 1.02871 0.97655 1.22734 0.96373 1.02040 0.95908 1.23088 0.97988 1.00998 0.93932 0.92807 0.95964 0.91127 0.92588 0.75271 0.92864 0.92698 0.89891 0.88298 0.76355 0.88308 0.91792 0.90791 0.89865 0.91155 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.87 71.98 0.64 -4.74 16 2 C 0.02 1.10 2.64 -12.28 -0.03 1.06 16 3 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.53 -30.85 8.37 25.60 0.21 -30.64 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -51.09 11.32 21.45 0.24 -50.85 16 8 Si 0.95 45.00 29.54 68.60 2.03 47.03 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 C 0.52 23.63 7.15 87.66 0.63 24.26 16 13 O -0.59 -31.38 15.46 -3.04 -0.05 -31.43 16 14 N -0.72 -23.57 5.45 -463.05 -2.52 -26.10 16 15 C 0.12 3.10 5.24 86.38 0.45 3.56 16 16 C -0.14 -2.51 4.97 30.60 0.15 -2.35 16 17 C 0.10 1.91 1.38 -10.27 -0.01 1.90 16 18 O -0.56 -12.39 13.39 -148.98 -1.99 -14.38 16 19 C -0.17 -2.87 7.32 31.12 0.23 -2.65 16 20 C -0.13 -2.02 8.02 31.12 0.25 -1.77 16 21 C -0.12 -1.87 7.47 31.12 0.23 -1.64 16 22 H 0.05 1.92 7.56 -2.39 -0.02 1.91 16 23 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 3.54 6.07 -2.39 -0.01 3.52 16 25 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 26 H 0.41 10.97 7.89 -92.70 -0.73 10.24 16 27 H 0.05 1.50 6.75 -2.39 -0.02 1.48 16 28 H 0.05 1.57 8.05 -2.39 -0.02 1.55 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.51 8.05 -2.39 -0.02 1.49 16 31 H 0.39 7.45 7.18 -74.06 -0.53 6.92 16 32 H 0.10 1.49 8.03 -2.39 -0.02 1.47 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.27 8.10 -2.39 -0.02 1.25 16 Total: -1.00 -68.75 302.95 0.71 -68.04 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -0.19 Total: 19.14 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 3.20 Total: -11.46 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -2.28 Total: -76.94 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -2.04 Total: -45.81 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -68.75 0.71 -68.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597634808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.837 kcal (2) G-P(sol) polarization free energy of solvation -68.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds