Wall clock time and date at job start Mon Mar 30 2020 03:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47358 * 2 1 4 4 C 1.34775 * 120.00048 * 263.74074 * 3 2 1 5 5 O 1.21279 * 120.00146 * 185.05713 * 4 3 2 6 6 C 1.50704 * 119.99726 * 5.05247 * 4 3 2 7 7 H 1.08997 * 109.47049 * 39.99346 * 6 4 3 8 8 C 1.52999 * 109.47096 * 279.98962 * 6 4 3 9 9 C 1.50695 * 109.46778 * 159.99193 * 6 4 3 10 10 H 1.08002 * 120.00373 * 5.38357 * 9 6 4 11 11 C 1.37878 * 119.99832 * 185.38374 * 9 6 4 12 12 N 1.31514 * 120.00098 * 8.89646 * 11 9 6 13 13 Si 1.86803 * 119.99958 * 188.89296 * 11 9 6 14 14 H 1.48507 * 109.47226 * 94.99337 * 13 11 9 15 15 H 1.48504 * 109.47375 * 214.99244 * 13 11 9 16 16 H 1.48501 * 109.47245 * 334.99635 * 13 11 9 17 17 C 1.46500 * 119.99774 * 83.73771 * 3 2 1 18 18 H 1.08995 * 110.54151 * 358.83617 * 17 3 2 19 19 C 1.54818 * 110.48459 * 236.22318 * 17 3 2 20 20 C 1.55001 * 102.08596 * 220.44490 * 19 17 3 21 21 O 1.44372 * 103.49532 * 37.02541 * 20 19 17 22 22 C 1.43749 * 106.97265 * 319.93948 * 21 20 19 23 23 H 1.09004 * 109.46806 * 300.00133 * 1 2 3 24 24 H 1.08996 * 109.46929 * 60.00056 * 1 2 3 25 25 H 1.08999 * 109.47129 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47134 * 239.99640 * 2 1 3 27 27 H 1.09009 * 109.47121 * 120.00117 * 2 1 3 28 28 H 1.09001 * 109.47186 * 49.40577 * 8 6 4 29 29 H 1.09005 * 109.46951 * 169.40662 * 8 6 4 30 30 H 1.09004 * 109.47109 * 289.40724 * 8 6 4 31 31 H 0.97004 * 119.99528 * 180.02562 * 12 11 9 32 32 H 1.09002 * 110.90357 * 338.63946 * 19 17 3 33 33 H 1.08999 * 110.90863 * 102.24756 * 19 17 3 34 34 H 1.08999 * 110.61877 * 278.51685 * 20 19 17 35 35 H 1.09005 * 110.61454 * 155.52544 * 20 19 17 36 36 H 1.09003 * 109.87490 * 267.08570 * 22 21 20 37 37 H 1.08998 * 109.87892 * 145.94188 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3630 1.9741 -1.1602 5 8 2.8531 3.0835 -1.1522 6 6 2.1394 1.2586 -2.4676 7 1 1.1829 0.7369 -2.4372 8 6 3.2650 0.2473 -2.6944 9 6 2.1298 2.2604 -3.5932 10 1 2.3575 3.2974 -3.3952 11 6 1.8303 1.8531 -4.8760 12 7 1.3841 0.6350 -5.0919 13 14 2.0584 3.0316 -6.3073 14 1 3.3895 2.8070 -6.9262 15 1 0.9963 2.7946 -7.3178 16 1 1.9708 4.4302 -5.8158 17 6 2.1321 2.1179 1.2612 18 1 1.7953 1.5025 2.0953 19 6 1.3187 3.4335 1.1954 20 6 2.2604 4.4336 1.9134 21 8 3.5771 4.0199 1.4899 22 6 3.5841 2.5824 1.4854 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.3952 -0.3587 -1.7978 29 1 3.0098 -0.3978 -3.5352 30 1 4.1919 0.7781 -2.9120 31 1 1.1738 0.3484 -5.9944 32 1 1.1477 3.7338 0.1616 33 1 0.3748 3.3345 1.7315 34 1 2.1600 4.3464 2.9952 35 1 2.0558 5.4540 1.5890 36 1 3.9486 2.2106 2.4431 37 1 4.2190 2.2174 0.6780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597686487.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:43 Heat of formation + Delta-G solvation = -101.939200 kcal Electronic energy + Delta-G solvation = -18706.863973 eV Core-core repulsion = 15869.503637 eV Total energy + Delta-G solvation = -2837.360336 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.47285 -39.32770 -36.68868 -35.74261 -33.15772 -32.06316 -30.89159 -29.23224 -27.25033 -25.13624 -24.06419 -23.20696 -22.48199 -19.62515 -18.40870 -17.94971 -17.47315 -16.81961 -16.43448 -16.18176 -15.95095 -15.38521 -14.81106 -14.65695 -14.34307 -14.10704 -13.76946 -13.37048 -13.07776 -12.93080 -12.75973 -12.68777 -12.62494 -12.37107 -12.34244 -12.23859 -12.03408 -11.91767 -11.67604 -11.08149 -10.60575 -10.52014 -10.06398 -9.46977 -8.20640 -6.24575 1.36315 1.38125 1.49556 1.98750 2.18046 2.44220 3.08903 3.12182 3.66917 3.85746 4.03090 4.18800 4.22611 4.27760 4.35748 4.48000 4.58406 4.69353 4.72567 4.79180 4.81334 4.91012 4.92540 4.97565 5.00446 5.11411 5.17630 5.39239 5.48328 5.70470 5.78252 5.92016 6.03231 6.17953 6.65181 6.83353 7.39847 7.60449 8.89053 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.008098 C = 0.006983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.619249 B = 3456.685670 C = 4008.754595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.614 5.614 4 C 0.517 3.483 5 O -0.565 6.565 6 C 0.028 3.972 7 H 0.045 0.955 8 C -0.113 4.113 9 C -0.528 4.528 10 H 0.041 0.959 11 C 0.024 3.976 12 N -0.909 5.909 13 Si 0.947 3.053 14 H -0.274 1.274 15 H -0.274 1.274 16 H -0.281 1.281 17 C 0.115 3.885 18 H 0.143 0.857 19 C -0.163 4.163 20 C 0.052 3.948 21 O -0.402 6.402 22 C 0.046 3.954 23 H 0.068 0.932 24 H 0.027 0.973 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.021 0.979 31 H 0.265 0.735 32 H 0.044 0.956 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.059 -3.235 15.563 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.349 5.349 4 C 0.307 3.693 5 O -0.443 6.443 6 C 0.007 3.993 7 H 0.063 0.937 8 C -0.171 4.171 9 C -0.566 4.566 10 H 0.059 0.941 11 C -0.175 4.175 12 N -0.548 5.548 13 Si 0.773 3.227 14 H -0.199 1.199 15 H -0.199 1.199 16 H -0.206 1.206 17 C 0.011 3.989 18 H 0.161 0.839 19 C -0.202 4.202 20 C -0.025 4.025 21 O -0.321 6.321 22 C -0.031 4.031 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.683 -2.644 15.363 15.680 hybrid contribution -0.070 0.590 -1.356 1.480 sum -1.753 -2.054 14.007 14.265 Atomic orbital electron populations 1.22135 0.95452 1.03031 1.01467 1.21912 0.95102 0.81068 1.04462 1.48253 1.66150 1.15052 1.05395 1.21530 0.75555 0.85824 0.86342 1.90584 1.44123 1.21790 1.87829 1.18783 0.96870 0.94777 0.88918 0.93694 1.21556 0.97031 0.98042 1.00494 1.21225 1.47459 0.94781 0.93129 0.94069 1.25525 0.94326 0.96997 1.00689 1.70006 1.44166 1.18759 1.21897 0.85711 0.78253 0.79267 0.79445 1.19944 1.19872 1.20630 1.22626 0.94719 0.94138 0.87383 0.83945 1.23449 1.00100 0.95365 1.01278 1.23587 0.81086 0.98675 0.99105 1.88858 1.32778 1.21020 1.89421 1.23485 0.97186 0.81378 1.01095 0.91283 0.95347 0.89633 0.90530 0.87235 0.92629 0.92629 0.95946 0.92598 0.93747 0.87421 0.88810 0.89892 0.89128 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 10.14 71.98 0.73 -3.23 16 2 C 0.10 2.53 5.56 86.38 0.48 3.01 16 3 N -0.61 -20.74 2.47 -792.33 -1.95 -22.69 16 4 C 0.52 23.94 5.68 87.66 0.50 24.44 16 5 O -0.57 -30.41 12.54 -0.42 -0.01 -30.41 16 6 C 0.03 1.41 1.65 -12.29 -0.02 1.39 16 7 H 0.05 2.35 6.53 -2.39 -0.02 2.34 16 8 C -0.11 -5.26 8.49 71.98 0.61 -4.64 16 9 C -0.53 -31.21 8.26 25.60 0.21 -30.99 16 10 H 0.04 2.64 6.91 -2.91 -0.02 2.62 16 11 C 0.02 1.38 5.25 84.65 0.44 1.83 16 12 N -0.91 -51.77 12.23 21.45 0.26 -51.51 16 13 Si 0.95 45.91 29.55 68.60 2.03 47.94 16 14 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 17 C 0.12 3.14 3.53 45.98 0.16 3.31 16 18 H 0.14 2.49 7.95 -2.39 -0.02 2.47 16 19 C -0.16 -4.73 6.34 31.90 0.20 -4.53 16 20 C 0.05 1.41 7.72 72.67 0.56 1.97 16 21 O -0.40 -14.44 11.14 -146.37 -1.63 -16.07 16 22 C 0.05 1.42 6.48 72.35 0.47 1.89 16 23 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.03 0.90 7.45 -2.39 -0.02 0.88 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 2.32 4.60 -2.39 -0.01 2.31 16 27 H 0.11 1.95 8.09 -2.38 -0.02 1.93 16 28 H 0.05 2.10 6.29 -2.39 -0.02 2.09 16 29 H 0.05 2.73 7.15 -2.38 -0.02 2.72 16 30 H 0.02 1.07 8.10 -2.38 -0.02 1.05 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.04 1.76 6.32 -2.39 -0.02 1.74 16 33 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 1.91 7.10 -2.39 -0.02 1.89 16 Total: -1.00 -72.84 292.01 4.10 -68.74 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.05 Total: 9.57 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 4.35 Total: -5.57 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -1.69 Total: -74.20 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -1.64 Total: -46.48 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -72.84 4.10 -68.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597686487.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.195 kcal (2) G-P(sol) polarization free energy of solvation -72.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds