Wall clock time and date at job start Mon Mar 30 2020 03:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47349 * 2 1 4 4 C 1.34775 * 120.00061 * 97.67249 * 3 2 1 5 5 O 1.21277 * 120.00251 * 181.06266 * 4 3 2 6 6 C 1.50699 * 119.99802 * 1.06771 * 4 3 2 7 7 H 1.08995 * 109.47419 * 34.91102 * 6 4 3 8 8 C 1.52999 * 109.47350 * 274.90501 * 6 4 3 9 9 C 1.50698 * 109.47087 * 154.90940 * 6 4 3 10 10 H 1.08008 * 120.00289 * 359.97438 * 9 6 4 11 11 C 1.37882 * 120.00256 * 180.27788 * 9 6 4 12 12 N 1.31518 * 119.99857 * 359.71913 * 11 9 6 13 13 Si 1.86804 * 120.00259 * 179.72614 * 11 9 6 14 14 H 1.48496 * 109.47191 * 89.99524 * 13 11 9 15 15 H 1.48496 * 109.46928 * 209.99659 * 13 11 9 16 16 H 1.48501 * 109.46722 * 329.99437 * 13 11 9 17 17 C 1.46498 * 120.00079 * 277.68027 * 3 2 1 18 18 H 1.09002 * 110.43598 * 354.86013 * 17 3 2 19 19 C 1.54807 * 110.49244 * 117.55687 * 17 3 2 20 20 C 1.54986 * 102.09406 * 97.79387 * 19 17 3 21 21 O 1.44381 * 103.49453 * 37.02650 * 20 19 17 22 22 C 1.43752 * 106.97047 * 319.94086 * 21 20 19 23 23 H 1.09005 * 109.47228 * 312.07255 * 1 2 3 24 24 H 1.09000 * 109.46916 * 72.06663 * 1 2 3 25 25 H 1.09000 * 109.47139 * 192.06983 * 1 2 3 26 26 H 1.09005 * 109.47409 * 240.00056 * 2 1 3 27 27 H 1.08999 * 109.47478 * 119.99848 * 2 1 3 28 28 H 1.09007 * 109.46780 * 77.37947 * 8 6 4 29 29 H 1.08993 * 109.47369 * 197.37907 * 8 6 4 30 30 H 1.09002 * 109.47134 * 317.38494 * 8 6 4 31 31 H 0.96998 * 120.00233 * 180.02562 * 12 11 9 32 32 H 1.09001 * 110.90972 * 215.99295 * 19 17 3 33 33 H 1.09004 * 110.90381 * 339.59495 * 19 17 3 34 34 H 1.09004 * 110.62248 * 278.52100 * 20 19 17 35 35 H 1.09003 * 110.75786 * 155.59158 * 20 19 17 36 36 H 1.09005 * 109.87624 * 267.08569 * 22 21 20 37 37 H 1.08997 * 109.87804 * 145.94166 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3900 1.9646 1.1567 5 8 2.7760 3.1143 1.1595 6 6 2.3258 1.1882 2.4468 7 1 2.5732 0.1442 2.2552 8 6 0.9131 1.2794 3.0272 9 6 3.3110 1.7657 3.4301 10 1 3.9229 2.6102 3.1488 11 6 3.4360 1.2120 4.6867 12 7 2.6913 0.1835 5.0290 13 14 4.6627 1.9230 5.9029 14 1 4.0044 2.9837 6.7071 15 1 5.1465 0.8467 6.8043 16 1 5.8124 2.5038 5.1639 17 6 2.1027 2.1283 -1.2573 18 1 1.8523 1.4843 -2.1003 19 6 1.1687 3.3623 -1.2182 20 6 2.1489 4.4995 -0.8335 21 8 3.3606 4.1525 -1.5378 22 6 3.5116 2.7266 -1.4357 23 1 -0.3634 0.6886 0.7629 24 1 -0.3633 0.3164 -0.9777 25 1 -0.3633 -1.0049 0.2149 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.2523 0.6049 2.4826 29 1 0.9338 0.9966 4.0796 30 1 0.5468 2.3017 2.9328 31 1 2.7789 -0.2058 5.9131 32 1 0.7251 3.5456 -2.1969 33 1 0.3960 3.2412 -0.4589 34 1 2.3205 4.5107 0.2429 35 1 1.7720 5.4650 -1.1708 36 1 4.1308 2.4803 -0.5731 37 1 3.9678 2.3362 -2.3454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597686490.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:51 Heat of formation + Delta-G solvation = -69.678813 kcal Electronic energy + Delta-G solvation = -18865.574102 eV Core-core repulsion = 16029.612682 eV Total energy + Delta-G solvation = -2835.961420 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.19033 -37.64926 -35.32633 -33.83455 -31.62551 -30.18479 -29.64795 -27.97146 -25.21007 -23.32697 -22.82140 -22.30877 -20.79657 -18.06274 -16.72808 -16.49981 -15.73417 -15.52997 -14.85968 -14.73007 -14.30954 -13.83667 -13.68465 -13.13476 -12.64376 -12.51671 -12.34082 -11.81422 -11.52392 -11.47648 -11.21826 -11.06594 -11.01654 -10.78874 -10.73542 -10.56014 -10.46753 -10.23225 -10.01297 -9.34765 -8.96658 -8.44290 -8.14812 -8.03974 -6.05565 -4.09482 3.32320 3.38214 3.43075 3.53461 3.61907 4.41672 4.44617 4.87403 5.01838 5.22290 5.27849 5.28550 5.52260 5.55731 5.61873 5.65187 5.82897 5.97136 6.05295 6.14989 6.16441 6.20253 6.24322 6.36259 6.61161 6.71358 6.85924 6.97619 7.16708 7.30638 7.39882 7.76926 7.94092 8.09200 8.35672 8.97077 9.26025 9.55720 11.01167 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026294 B = 0.008516 C = 0.007060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.624430 B = 3287.129939 C = 3964.774559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.621 5.621 4 C 0.521 3.479 5 O -0.533 6.533 6 C 0.032 3.968 7 H 0.048 0.952 8 C -0.132 4.132 9 C -0.498 4.498 10 H 0.069 0.931 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.115 3.885 18 H 0.091 0.909 19 C -0.160 4.160 20 C 0.031 3.969 21 O -0.381 6.381 22 C 0.047 3.953 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.022 0.978 29 H 0.094 0.906 30 H 0.023 0.977 31 H 0.261 0.739 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 -0.929 -11.152 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.357 5.357 4 C 0.314 3.686 5 O -0.410 6.410 6 C 0.011 3.989 7 H 0.065 0.935 8 C -0.190 4.190 9 C -0.537 4.537 10 H 0.087 0.913 11 C -0.142 4.142 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 C 0.011 3.989 18 H 0.110 0.890 19 C -0.199 4.199 20 C -0.045 4.045 21 O -0.300 6.300 22 C -0.031 4.031 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.041 0.959 29 H 0.113 0.887 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.410 -0.289 -11.093 11.941 hybrid contribution 0.302 0.004 0.634 0.702 sum -4.108 -0.285 -10.459 11.241 Atomic orbital electron populations 1.22305 0.96458 1.02332 1.01844 1.21612 0.94149 0.82774 1.03378 1.48420 1.66910 1.13973 1.06372 1.22049 0.73830 0.87576 0.85118 1.90315 1.46147 1.18117 1.86410 1.18911 0.96163 0.95849 0.87988 0.93484 1.21772 0.94681 0.97736 1.04793 1.21106 1.19809 1.15581 0.97173 0.91255 1.24933 0.96197 0.94944 0.98144 1.69884 1.39705 1.23096 1.20716 0.86477 0.81533 0.78583 0.80789 1.20634 1.21298 1.19787 1.22265 0.95368 0.93806 0.87491 0.89043 1.23405 0.98868 0.95968 1.01639 1.24200 0.82919 0.96021 1.01332 1.88728 1.44351 1.21336 1.75545 1.23382 0.96414 0.81905 1.01353 0.91446 0.93333 0.91915 0.91719 0.88578 0.95930 0.88746 0.95744 0.92931 0.91089 0.90247 0.86672 0.91192 0.91265 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.73 37.16 0.36 -1.81 16 2 C 0.10 1.49 5.91 -4.04 -0.02 1.47 16 3 N -0.62 -10.70 2.45 -164.37 -0.40 -11.10 16 4 C 0.52 11.39 5.80 -10.99 -0.06 11.32 16 5 O -0.53 -12.88 10.13 5.54 0.06 -12.82 16 6 C 0.03 0.76 1.89 -92.93 -0.18 0.59 16 7 H 0.05 1.15 6.06 -51.93 -0.31 0.84 16 8 C -0.13 -3.01 9.01 37.16 0.33 -2.68 16 9 C -0.50 -13.80 8.33 -34.44 -0.29 -14.09 16 10 H 0.07 2.03 7.03 -52.48 -0.37 1.66 16 11 C 0.06 1.60 5.21 -17.82 -0.09 1.50 16 12 N -0.89 -24.64 11.36 55.43 0.63 -24.01 16 13 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 C 0.12 1.77 3.62 -66.40 -0.24 1.52 16 18 H 0.09 1.12 7.93 -51.93 -0.41 0.71 16 19 C -0.16 -2.42 6.43 -24.73 -0.16 -2.57 16 20 C 0.03 0.54 7.10 38.21 0.27 0.81 16 21 O -0.38 -7.15 11.52 -35.25 -0.41 -7.56 16 22 C 0.05 0.81 6.80 37.73 0.26 1.06 16 23 H 0.07 0.99 6.21 -51.93 -0.32 0.67 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 27 H 0.10 1.54 5.57 -51.93 -0.29 1.25 16 28 H 0.02 0.44 5.64 -51.93 -0.29 0.14 16 29 H 0.09 2.41 5.83 -51.93 -0.30 2.11 16 30 H 0.02 0.54 8.01 -51.93 -0.42 0.13 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 34 H 0.12 2.41 4.78 -53.16 -0.25 2.16 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.39 6.58 -51.93 -0.34 1.04 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 284.95 15.07 4.29 4.29 Total: -1.00 -29.74 284.95 -6.07 -35.81 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.40 Total: 1.68 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 0.18 Total: -2.87 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.23 Total: -35.11 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.35 Total: -20.38 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.74 -6.07 -35.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597686490.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.867 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds