Wall clock time and date at job start Mon Mar 30 2020 03:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42906 * 109.47220 * 2 1 4 4 C 1.42900 * 114.00151 * 179.97438 * 3 2 1 5 5 C 1.52998 * 113.01710 * 48.34099 * 4 3 2 6 6 C 1.53943 * 113.73811 * 179.97438 * 4 3 2 7 7 N 1.47581 * 86.23872 * 137.89956 * 6 4 3 8 8 C 1.34780 * 134.49176 * 155.42741 * 7 6 4 9 9 O 1.21276 * 120.00135 * 359.97438 * 8 7 6 10 10 C 1.50707 * 119.99831 * 180.02562 * 8 7 6 11 11 H 1.08994 * 109.47016 * 59.99356 * 10 8 7 12 12 C 1.53008 * 109.46511 * 299.99715 * 10 8 7 13 13 C 1.50692 * 109.46976 * 179.97438 * 10 8 7 14 14 H 1.08003 * 120.00134 * 5.46270 * 13 10 8 15 15 C 1.37875 * 119.99991 * 185.45688 * 13 10 8 16 16 N 1.31520 * 119.99763 * 9.66269 * 15 13 10 17 17 Si 1.86805 * 120.00409 * 189.65785 * 15 13 10 18 18 H 1.48502 * 109.46993 * 84.99464 * 17 15 13 19 19 H 1.48492 * 109.47151 * 204.99581 * 17 15 13 20 20 H 1.48499 * 109.46952 * 324.99921 * 17 15 13 21 21 C 1.47804 * 90.92474 * 335.46122 * 7 6 4 22 22 H 1.08992 * 109.47382 * 299.99564 * 1 2 3 23 23 H 1.08996 * 109.46890 * 60.00393 * 1 2 3 24 24 H 1.09002 * 109.46772 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47568 * 240.00131 * 2 1 3 26 26 H 1.09004 * 109.47473 * 119.99707 * 2 1 3 27 27 H 1.08993 * 109.47145 * 191.65855 * 5 4 3 28 28 H 1.09003 * 109.47186 * 311.65773 * 5 4 3 29 29 H 1.09006 * 109.47316 * 71.66155 * 5 4 3 30 30 H 1.09006 * 113.77114 * 252.25444 * 6 4 3 31 31 H 1.09004 * 113.77342 * 23.54282 * 6 4 3 32 32 H 1.09002 * 109.46232 * 184.26758 * 12 10 8 33 33 H 1.08994 * 109.46808 * 304.26380 * 12 10 8 34 34 H 1.09001 * 109.47374 * 64.26746 * 12 10 8 35 35 H 0.97003 * 119.99540 * 180.02562 * 16 15 13 36 36 H 1.09009 * 113.66618 * 270.23540 * 21 7 6 37 37 H 1.09004 * 113.94375 * 138.88463 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 4.1016 0.5742 -1.0511 6 6 3.9374 2.9139 0.0000 7 7 4.9369 2.4636 0.9880 8 6 6.1571 2.8969 1.3620 9 8 6.6433 3.8726 0.8305 10 6 6.9178 2.1683 2.4398 11 1 7.0878 1.1370 2.1306 12 6 6.1061 2.1847 3.7367 13 6 8.2428 2.8491 2.6672 14 1 8.4712 3.7715 2.1538 15 6 9.1635 2.2946 3.5307 16 7 8.9714 1.0843 4.0083 17 14 10.6839 3.2622 4.0224 18 1 10.3570 4.1498 5.1671 19 1 11.7629 2.3216 4.4176 20 1 11.1404 4.0845 2.8731 21 6 4.0611 1.3466 1.4005 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 5.1757 0.5431 -0.8684 28 1 3.6933 -0.4347 -0.9901 29 1 3.9136 0.9829 -2.0440 30 1 4.3695 3.2282 -0.9502 31 1 3.2182 3.6300 0.3976 32 1 6.6882 1.7246 4.5353 33 1 5.8712 3.2145 4.0052 34 1 5.1809 1.6264 3.5934 35 1 9.6190 0.6944 4.6162 36 1 3.3789 1.6020 2.2114 37 1 4.5902 0.4087 1.5693 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597704462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:31 Heat of formation + Delta-G solvation = -74.637859 kcal Electronic energy + Delta-G solvation = -17910.992126 eV Core-core repulsion = 15074.815666 eV Total energy + Delta-G solvation = -2836.176461 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.65276 -39.56958 -37.41551 -35.77101 -32.98060 -32.04778 -30.85391 -28.15654 -27.46775 -27.06638 -24.34055 -23.40723 -21.18513 -19.78523 -18.42133 -18.09349 -17.57438 -17.10802 -16.47256 -16.11076 -15.93798 -15.27177 -14.84654 -14.64033 -14.40820 -14.12177 -13.65344 -13.42184 -13.14333 -13.01109 -12.95194 -12.85242 -12.79864 -12.57262 -12.52250 -12.30686 -12.08933 -12.00369 -11.41596 -11.12707 -10.64149 -10.54174 -10.31639 -9.68234 -8.21913 -6.27855 1.39658 1.40423 1.51262 1.78608 1.86134 2.43073 2.69046 3.10322 3.23916 3.58731 3.85931 4.09128 4.26173 4.43447 4.44637 4.47469 4.55916 4.57180 4.61433 4.66883 4.78049 4.80304 4.83701 4.88859 4.98461 5.08664 5.10751 5.19985 5.35712 5.44260 5.65946 5.81219 6.15518 6.26317 6.69135 6.82485 7.34741 7.42436 8.87774 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.046166 B = 0.005296 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.360746 B = 5285.241805 C = 5531.178913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.042 3.958 3 O -0.377 6.377 4 C 0.096 3.904 5 C -0.156 4.156 6 C 0.111 3.889 7 N -0.650 5.650 8 C 0.545 3.455 9 O -0.588 6.588 10 C 0.034 3.966 11 H 0.042 0.958 12 C -0.111 4.111 13 C -0.535 4.535 14 H 0.047 0.953 15 C 0.024 3.976 16 N -0.911 5.911 17 Si 0.954 3.046 18 H -0.271 1.271 19 H -0.274 1.274 20 H -0.279 1.279 21 C 0.083 3.917 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.026 0.974 34 H 0.054 0.946 35 H 0.266 0.734 36 H 0.099 0.901 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.478 -6.176 -6.630 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.034 4.034 3 O -0.296 6.296 4 C 0.055 3.945 5 C -0.213 4.213 6 C -0.011 4.011 7 N -0.387 5.387 8 C 0.338 3.662 9 O -0.468 6.468 10 C 0.013 3.987 11 H 0.060 0.940 12 C -0.169 4.169 13 C -0.573 4.573 14 H 0.065 0.935 15 C -0.176 4.176 16 N -0.549 5.549 17 Si 0.779 3.221 18 H -0.196 1.196 19 H -0.199 1.199 20 H -0.204 1.204 21 C -0.039 4.039 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.072 -5.580 -6.735 18.298 hybrid contribution 1.202 0.432 0.421 1.345 sum -14.870 -5.149 -6.314 16.956 Atomic orbital electron populations 1.21760 0.92649 1.03391 1.02729 1.22780 0.96247 0.82946 1.01433 1.87946 1.18523 1.28375 1.94777 1.23142 0.81475 0.95515 0.94333 1.22033 1.00608 1.00359 0.98334 1.23287 0.88450 0.96144 0.93244 1.49853 1.15132 1.32757 1.40968 1.21347 0.79245 0.83131 0.82514 1.90508 1.69104 1.29583 1.57611 1.18715 0.93482 0.95880 0.90658 0.94029 1.21499 0.97848 0.99147 0.98431 1.21236 1.00635 1.08954 1.26460 0.93468 1.25587 1.00640 0.95485 0.95840 1.70024 1.37784 1.14287 1.32822 0.85635 0.79104 0.78784 0.78553 1.19643 1.19864 1.20412 1.24036 0.90870 0.90536 0.98478 0.92386 0.92106 0.89174 0.91586 0.92499 0.92416 0.89105 0.90176 0.89939 0.88731 0.92646 0.95449 0.92732 0.92455 0.88299 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.04 0.66 6.00 71.98 0.43 1.09 16 3 O -0.38 -8.26 10.31 -148.98 -1.54 -9.79 16 4 C 0.10 2.32 1.44 -10.14 -0.01 2.30 16 5 C -0.16 -3.29 8.86 71.98 0.64 -2.66 16 6 C 0.11 3.30 8.23 86.48 0.71 4.01 16 7 N -0.65 -24.20 3.45 -836.62 -2.88 -27.08 16 8 C 0.54 26.77 7.38 87.66 0.65 27.42 16 9 O -0.59 -33.44 16.20 -3.02 -0.05 -33.49 16 10 C 0.03 1.76 2.34 -12.28 -0.03 1.74 16 11 H 0.04 2.28 8.08 -2.39 -0.02 2.26 16 12 C -0.11 -5.16 8.90 71.98 0.64 -4.52 16 13 C -0.53 -31.84 8.29 25.60 0.21 -31.63 16 14 H 0.05 3.01 6.79 -2.91 -0.02 2.99 16 15 C 0.02 1.38 5.16 84.65 0.44 1.82 16 16 N -0.91 -51.96 12.17 21.45 0.26 -51.70 16 17 Si 0.95 45.42 29.55 68.60 2.03 47.44 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 21 C 0.08 2.34 6.25 86.44 0.54 2.88 16 22 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.88 6.36 -2.39 -0.02 0.86 16 26 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.06 1.48 7.99 -2.39 -0.02 1.46 16 28 H 0.09 1.47 6.17 -2.39 -0.01 1.46 16 29 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.08 2.45 8.10 -2.38 -0.02 2.43 16 31 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.05 2.78 6.82 -2.39 -0.02 2.77 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 2.08 6.31 -2.39 -0.02 2.06 16 35 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.10 2.54 8.03 -2.38 -0.02 2.52 16 37 H 0.09 2.43 8.10 -2.38 -0.02 2.41 16 Total: -1.00 -70.06 304.19 3.81 -66.25 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.04 Total: 7.06 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 4.96 Total: 1.31 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -2.62 Total: -78.78 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -1.59 Total: -43.29 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -70.06 3.81 -66.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597704462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.389 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds