Wall clock time and date at job start Mon Mar 30 2020 03:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47368 * 2 1 4 4 N 1.46504 * 109.46948 * 120.00160 * 2 1 3 5 5 C 1.34771 * 119.99787 * 316.67847 * 4 2 1 6 6 O 1.21287 * 119.99959 * 185.56071 * 5 4 2 7 7 C 1.50695 * 120.00256 * 5.56262 * 5 4 2 8 8 H 1.08999 * 109.47344 * 49.22708 * 7 5 4 9 9 C 1.53002 * 109.47105 * 289.23009 * 7 5 4 10 10 C 1.50705 * 109.47535 * 169.23017 * 7 5 4 11 11 H 1.08003 * 119.99519 * 4.69794 * 10 7 5 12 12 C 1.37871 * 120.00323 * 184.97992 * 10 7 5 13 13 N 1.31516 * 120.00397 * 191.39825 * 12 10 7 14 14 Si 1.86803 * 120.00000 * 11.39457 * 12 10 7 15 15 H 1.48493 * 109.47288 * 88.86896 * 14 12 10 16 16 H 1.48499 * 109.46984 * 208.87165 * 14 12 10 17 17 H 1.48502 * 109.46869 * 328.87022 * 14 12 10 18 18 C 1.46500 * 120.00036 * 136.68168 * 4 2 1 19 19 C 1.54035 * 113.81272 * 223.94897 * 18 4 2 20 20 O 1.44448 * 85.42199 * 223.23482 * 19 18 4 21 21 C 1.44172 * 93.37949 * 24.08575 * 20 19 18 22 22 H 1.09003 * 109.47005 * 332.70743 * 1 2 3 23 23 H 1.09005 * 109.47079 * 92.70151 * 1 2 3 24 24 H 1.09001 * 109.47641 * 212.70627 * 1 2 3 25 25 H 1.08999 * 109.46971 * 239.99666 * 2 1 3 26 26 H 1.08996 * 109.46801 * 209.45267 * 3 2 1 27 27 H 1.09002 * 109.46686 * 329.45073 * 3 2 1 28 28 H 1.08998 * 109.47129 * 89.45151 * 3 2 1 29 29 H 1.09002 * 109.47090 * 331.14558 * 9 7 5 30 30 H 1.08999 * 109.47353 * 91.15024 * 9 7 5 31 31 H 1.09009 * 109.46913 * 211.15112 * 9 7 5 32 32 H 0.96993 * 120.00377 * 179.97438 * 13 12 10 33 33 H 1.09002 * 112.99479 * 355.76978 * 18 4 2 34 34 H 1.08994 * 113.86955 * 337.33868 * 19 18 4 35 35 H 1.09000 * 113.86781 * 109.05041 * 19 18 4 36 36 H 1.08997 * 113.86953 * 221.76434 * 21 20 19 37 37 H 1.09001 * 113.98122 * 90.07618 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.4423 -0.4563 2.3919 6 8 1.9092 -0.9492 3.3969 7 6 0.2180 0.4179 2.4801 8 1 -0.5142 0.0936 1.7407 9 6 0.6088 1.8718 2.2072 10 6 -0.3789 0.3088 3.8596 11 1 0.1234 -0.2693 4.6211 12 6 -1.5692 0.9421 4.1478 13 7 -1.9779 1.0385 5.3941 14 14 -2.6015 1.6632 2.7680 15 1 -3.5351 0.6285 2.2554 16 1 -3.3782 2.8193 3.2832 17 1 -1.7116 2.1153 1.6684 18 6 3.1327 -1.6359 1.0926 19 6 2.9181 -2.9396 1.8845 20 8 4.2930 -2.7791 2.2972 21 6 4.2813 -1.3540 2.0793 22 1 -0.3633 0.9133 0.4712 23 1 -0.3633 -0.0484 -1.0266 24 1 -0.3634 -0.8647 0.5553 25 1 1.8933 -0.5139 -0.8900 26 1 3.0048 1.4866 -0.5053 27 1 1.3267 2.0800 -0.5224 28 1 2.1519 1.7883 1.0276 29 1 1.6422 2.0339 2.5137 30 1 0.5086 2.0812 1.1422 31 1 -0.0460 2.5361 2.7713 32 1 -2.8151 1.4844 5.5969 33 1 3.4631 -1.7938 0.0659 34 1 2.1996 -2.8477 2.6990 35 1 2.7439 -3.8134 1.2566 36 1 5.1860 -0.9727 1.6057 37 1 3.9805 -0.7748 2.9524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597704660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:24 Heat of formation + Delta-G solvation = 10.529173 kcal Electronic energy + Delta-G solvation = -19135.358642 eV Core-core repulsion = 16302.875301 eV Total energy + Delta-G solvation = -2832.483341 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.91864 -38.81420 -36.20895 -33.95425 -31.88997 -30.50572 -28.09829 -27.43835 -26.25011 -25.16850 -23.31067 -21.45588 -20.54805 -18.12977 -17.12244 -16.47782 -16.09862 -15.74455 -15.16694 -14.59369 -14.32633 -14.15628 -13.73902 -13.26805 -12.97490 -12.79801 -12.60154 -12.20211 -12.08244 -11.73304 -11.38111 -11.22526 -10.97649 -10.86067 -10.72002 -10.55488 -10.47390 -9.86370 -9.56590 -9.45228 -8.97356 -8.49037 -8.41244 -8.26504 -6.06260 -4.02111 3.21645 3.28021 3.33092 3.36094 3.40958 3.97472 4.38647 4.57451 4.82461 5.00561 5.20217 5.27886 5.30338 5.34548 5.54436 5.64636 5.68213 5.87241 5.94537 5.98255 6.00560 6.08821 6.17751 6.26640 6.37868 6.39020 6.42745 6.50671 6.52325 6.83008 7.04590 7.22765 7.58232 7.95115 8.54049 9.01277 9.14996 9.54792 11.06877 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.009438 C = 0.007947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.087468 B = 2966.079399 C = 3522.435331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.145 3.855 3 C -0.192 4.192 4 N -0.621 5.621 5 C 0.532 3.468 6 O -0.523 6.523 7 C -0.031 4.031 8 H 0.080 0.920 9 C -0.154 4.154 10 C -0.507 4.507 11 H 0.089 0.911 12 C 0.073 3.927 13 N -0.893 5.893 14 Si 0.858 3.142 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.253 1.253 18 C 0.082 3.918 19 C 0.023 3.977 20 O -0.382 6.382 21 C 0.026 3.974 22 H 0.091 0.909 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.263 0.737 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.753 -0.679 -14.651 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.041 3.959 3 C -0.250 4.250 4 N -0.358 5.358 5 C 0.323 3.677 6 O -0.398 6.398 7 C -0.052 4.052 8 H 0.097 0.903 9 C -0.211 4.211 10 C -0.545 4.545 11 H 0.107 0.893 12 C -0.129 4.129 13 N -0.531 5.531 14 Si 0.685 3.315 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.177 1.177 18 C -0.023 4.023 19 C -0.054 4.054 20 O -0.300 6.300 21 C -0.052 4.052 22 H 0.110 0.890 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.054 -1.060 -13.865 15.592 hybrid contribution -0.769 0.534 -0.830 1.251 sum 6.285 -0.525 -14.695 15.991 Atomic orbital electron populations 1.23099 0.94811 1.05060 1.01698 1.20959 0.94590 0.93073 0.87309 1.23077 1.00478 0.96313 1.05088 1.48537 1.34484 1.44022 1.08715 1.21436 0.85064 0.80255 0.80924 1.90554 1.63736 1.50235 1.35274 1.20108 0.91991 0.91525 1.01554 0.90284 1.22906 1.00262 0.98260 0.99683 1.20946 1.06546 1.32413 0.94629 0.89331 1.24924 0.97525 0.95390 0.95036 1.69936 1.22226 1.43334 1.17608 0.87317 0.81119 0.79184 0.83869 1.20485 1.21388 1.17674 1.24475 0.87662 0.89808 1.00318 1.24592 0.85487 0.96801 0.98540 1.89637 1.27839 1.22239 1.90312 1.24483 0.97533 0.84017 0.99178 0.89034 0.92565 0.90805 0.90259 0.93381 0.91565 0.88899 0.93609 0.92693 0.92243 0.92685 0.87158 0.87612 0.89988 0.90130 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 7.36 37.16 0.27 -2.36 16 2 C 0.14 1.88 3.26 -67.93 -0.22 1.66 16 3 C -0.19 -2.34 7.97 37.16 0.30 -2.04 16 4 N -0.62 -10.00 2.63 -166.06 -0.44 -10.44 16 5 C 0.53 11.14 5.62 -10.99 -0.06 11.08 16 6 O -0.52 -12.79 11.25 5.55 0.06 -12.73 16 7 C -0.03 -0.68 1.22 -92.92 -0.11 -0.80 16 8 H 0.08 1.65 2.44 -51.95 -0.13 1.52 16 9 C -0.15 -3.02 5.57 37.16 0.21 -2.82 16 10 C -0.51 -14.22 8.80 -34.44 -0.30 -14.52 16 11 H 0.09 2.87 7.04 -52.48 -0.37 2.50 16 12 C 0.07 2.05 5.18 -17.82 -0.09 1.96 16 13 N -0.89 -27.21 13.96 55.43 0.77 -26.43 16 14 Si 0.86 19.85 25.80 -169.99 -4.39 15.47 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 17 H -0.25 -5.12 4.77 56.52 0.27 -4.85 16 18 C 0.08 1.20 4.66 -66.86 -0.31 0.89 16 19 C 0.02 0.38 8.49 37.64 0.32 0.70 16 20 O -0.38 -6.73 12.46 -35.23 -0.44 -7.17 16 21 C 0.03 0.41 8.53 37.64 0.32 0.73 16 22 H 0.09 1.43 3.21 -51.93 -0.17 1.26 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.07 1.15 6.50 -51.93 -0.34 0.82 16 25 H 0.08 0.82 7.77 -51.93 -0.40 0.42 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.73 7.24 -51.93 -0.38 0.35 16 28 H 0.09 1.34 3.90 -51.93 -0.20 1.14 16 29 H 0.05 0.88 6.49 -51.93 -0.34 0.54 16 30 H 0.05 0.89 3.31 -51.93 -0.17 0.72 16 31 H 0.06 1.27 5.64 -51.92 -0.29 0.98 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.11 1.24 7.83 -51.93 -0.41 0.84 16 34 H 0.11 2.07 5.87 -51.93 -0.30 1.76 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.10 1.88 6.20 -51.93 -0.32 1.56 16 LS Contribution 266.04 15.07 4.01 4.01 Total: -1.00 -32.08 266.04 -4.88 -36.96 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.77 Total: 5.85 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 0.31 Total: -5.53 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.34 Total: -36.87 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.38 Total: -19.89 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.39 Total: 15.47 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.08 -4.88 -36.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597704660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.486 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds