Wall clock time and date at job start Mon Mar 30 2020 03:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47368 * 2 1 4 4 N 1.46504 * 109.46948 * 120.00160 * 2 1 3 5 5 C 1.34771 * 119.99787 * 316.67847 * 4 2 1 6 6 O 1.21287 * 119.99959 * 185.56071 * 5 4 2 7 7 C 1.50695 * 120.00256 * 5.56262 * 5 4 2 8 8 H 1.08999 * 109.47344 * 49.22708 * 7 5 4 9 9 C 1.53002 * 109.47105 * 289.23009 * 7 5 4 10 10 C 1.50705 * 109.47535 * 169.23017 * 7 5 4 11 11 H 1.08003 * 119.99519 * 4.69794 * 10 7 5 12 12 C 1.37871 * 120.00323 * 184.97992 * 10 7 5 13 13 N 1.31516 * 120.00397 * 191.39825 * 12 10 7 14 14 Si 1.86803 * 120.00000 * 11.39457 * 12 10 7 15 15 H 1.48493 * 109.47288 * 88.86896 * 14 12 10 16 16 H 1.48499 * 109.46984 * 208.87165 * 14 12 10 17 17 H 1.48502 * 109.46869 * 328.87022 * 14 12 10 18 18 C 1.46500 * 120.00036 * 136.68168 * 4 2 1 19 19 C 1.54035 * 113.81272 * 223.94897 * 18 4 2 20 20 O 1.44448 * 85.42199 * 223.23482 * 19 18 4 21 21 C 1.44172 * 93.37949 * 24.08575 * 20 19 18 22 22 H 1.09003 * 109.47005 * 332.70743 * 1 2 3 23 23 H 1.09005 * 109.47079 * 92.70151 * 1 2 3 24 24 H 1.09001 * 109.47641 * 212.70627 * 1 2 3 25 25 H 1.08999 * 109.46971 * 239.99666 * 2 1 3 26 26 H 1.08996 * 109.46801 * 209.45267 * 3 2 1 27 27 H 1.09002 * 109.46686 * 329.45073 * 3 2 1 28 28 H 1.08998 * 109.47129 * 89.45151 * 3 2 1 29 29 H 1.09002 * 109.47090 * 331.14558 * 9 7 5 30 30 H 1.08999 * 109.47353 * 91.15024 * 9 7 5 31 31 H 1.09009 * 109.46913 * 211.15112 * 9 7 5 32 32 H 0.96993 * 120.00377 * 179.97438 * 13 12 10 33 33 H 1.09002 * 112.99479 * 355.76978 * 18 4 2 34 34 H 1.08994 * 113.86955 * 337.33868 * 19 18 4 35 35 H 1.09000 * 113.86781 * 109.05041 * 19 18 4 36 36 H 1.08997 * 113.86953 * 221.76434 * 21 20 19 37 37 H 1.09001 * 113.98122 * 90.07618 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.4423 -0.4563 2.3919 6 8 1.9092 -0.9492 3.3969 7 6 0.2180 0.4179 2.4801 8 1 -0.5142 0.0936 1.7407 9 6 0.6088 1.8718 2.2072 10 6 -0.3789 0.3088 3.8596 11 1 0.1234 -0.2693 4.6211 12 6 -1.5692 0.9421 4.1478 13 7 -1.9779 1.0385 5.3941 14 14 -2.6015 1.6632 2.7680 15 1 -3.5351 0.6285 2.2554 16 1 -3.3782 2.8193 3.2832 17 1 -1.7116 2.1153 1.6684 18 6 3.1327 -1.6359 1.0926 19 6 2.9181 -2.9396 1.8845 20 8 4.2930 -2.7791 2.2972 21 6 4.2813 -1.3540 2.0793 22 1 -0.3633 0.9133 0.4712 23 1 -0.3633 -0.0484 -1.0266 24 1 -0.3634 -0.8647 0.5553 25 1 1.8933 -0.5139 -0.8900 26 1 3.0048 1.4866 -0.5053 27 1 1.3267 2.0800 -0.5224 28 1 2.1519 1.7883 1.0276 29 1 1.6422 2.0339 2.5137 30 1 0.5086 2.0812 1.1422 31 1 -0.0460 2.5361 2.7713 32 1 -2.8151 1.4844 5.5969 33 1 3.4631 -1.7938 0.0659 34 1 2.1996 -2.8477 2.6990 35 1 2.7439 -3.8134 1.2566 36 1 5.1860 -0.9727 1.6057 37 1 3.9805 -0.7748 2.9524 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597704660.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:23 Heat of formation + Delta-G solvation = -14.646609 kcal Electronic energy + Delta-G solvation = -19136.450345 eV Core-core repulsion = 16302.875301 eV Total energy + Delta-G solvation = -2833.575045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.28145 -40.19367 -37.67405 -35.71930 -33.66165 -32.02459 -29.34898 -28.57675 -27.50932 -27.07381 -24.78960 -22.94629 -21.76743 -19.63294 -18.83774 -18.01343 -17.44366 -17.09763 -16.75540 -16.17735 -15.73252 -15.52651 -15.25537 -14.73533 -14.45009 -14.18990 -13.98442 -13.58144 -13.39173 -13.14930 -12.73038 -12.70052 -12.50747 -12.29398 -12.19661 -11.94612 -11.87530 -11.55449 -11.00241 -10.88742 -10.81938 -10.47102 -10.06489 -9.59991 -8.24326 -6.27162 1.38145 1.41373 1.51882 1.81411 2.07006 2.40283 2.76164 3.09173 3.34925 3.71128 4.01921 4.13401 4.14026 4.24881 4.43853 4.46499 4.49874 4.59965 4.68173 4.72834 4.79473 4.88460 4.96984 5.00796 5.03331 5.08449 5.17103 5.22831 5.36599 5.45744 5.57950 5.67858 5.84255 6.26529 6.57897 6.86167 7.31489 7.49026 8.93789 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.009438 C = 0.007947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.087468 B = 2966.079399 C = 3522.435331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.136 3.864 3 C -0.194 4.194 4 N -0.608 5.608 5 C 0.527 3.473 6 O -0.575 6.575 7 C -0.032 4.032 8 H 0.105 0.895 9 C -0.146 4.146 10 C -0.521 4.521 11 H 0.019 0.981 12 C 0.006 3.994 13 N -0.955 5.955 14 Si 0.934 3.066 15 H -0.270 1.270 16 H -0.292 1.292 17 H -0.200 1.200 18 C 0.096 3.904 19 C 0.015 3.985 20 O -0.401 6.401 21 C 0.020 3.980 22 H 0.074 0.926 23 H 0.097 0.903 24 H 0.050 0.950 25 H 0.125 0.875 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.102 0.898 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.166 0.834 34 H 0.060 0.940 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.157 0.203 -20.229 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.034 3.966 3 C -0.251 4.251 4 N -0.343 5.343 5 C 0.318 3.682 6 O -0.454 6.454 7 C -0.053 4.053 8 H 0.122 0.878 9 C -0.203 4.203 10 C -0.559 4.559 11 H 0.037 0.963 12 C -0.190 4.190 13 N -0.595 5.595 14 Si 0.756 3.244 15 H -0.196 1.196 16 H -0.218 1.218 17 H -0.122 1.122 18 C -0.008 4.008 19 C -0.063 4.063 20 O -0.320 6.320 21 C -0.058 4.058 22 H 0.092 0.908 23 H 0.116 0.884 24 H 0.069 0.931 25 H 0.143 0.857 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.120 0.880 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.183 0.817 34 H 0.078 0.922 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.493 -0.178 -19.507 20.897 hybrid contribution -0.804 0.168 0.996 1.291 sum 6.689 -0.009 -18.511 19.683 Atomic orbital electron populations 1.23054 0.95415 1.02950 1.03757 1.21414 0.94243 0.94000 0.86959 1.23032 1.02547 0.95658 1.03867 1.48456 1.34062 1.43640 1.08116 1.21254 0.85033 0.79918 0.81996 1.90559 1.65026 1.52124 1.37682 1.20155 0.93152 0.93839 0.98165 0.87822 1.22866 0.99627 0.95549 1.02278 1.21151 1.06895 1.31423 0.96464 0.96297 1.26023 0.98828 0.95883 0.98237 1.70145 1.23028 1.45331 1.21019 0.86110 0.79202 0.78090 0.81033 1.19586 1.21831 1.12164 1.24641 0.86071 0.87758 1.02337 1.24568 0.84042 0.99687 0.98000 1.89617 1.28376 1.23273 1.90689 1.24487 0.99973 0.82894 0.98455 0.90770 0.88444 0.93129 0.85680 0.90911 0.89489 0.91707 0.93882 0.88045 0.94279 0.92690 0.81673 0.92230 0.86475 0.86332 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.37 7.36 71.98 0.53 -3.84 16 2 C 0.14 2.76 3.26 44.99 0.15 2.90 16 3 C -0.19 -3.61 7.97 71.98 0.57 -3.03 16 4 N -0.61 -18.02 2.63 -808.75 -2.12 -20.15 16 5 C 0.53 22.48 5.62 87.66 0.49 22.98 16 6 O -0.58 -30.32 11.25 -3.05 -0.03 -30.35 16 7 C -0.03 -1.43 1.22 -12.29 -0.01 -1.45 16 8 H 0.10 4.13 2.44 -2.40 -0.01 4.12 16 9 C -0.15 -5.51 5.57 71.98 0.40 -5.11 16 10 C -0.52 -31.04 8.80 25.60 0.23 -30.82 16 11 H 0.02 1.34 7.04 -2.91 -0.02 1.32 16 12 C 0.01 0.36 5.18 84.65 0.44 0.80 16 13 N -0.96 -61.75 13.96 21.45 0.30 -61.46 16 14 Si 0.93 40.81 25.80 68.60 1.77 42.58 16 15 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 16 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.20 -6.98 4.77 99.48 0.47 -6.50 16 18 C 0.10 2.49 4.66 45.69 0.21 2.70 16 19 C 0.01 0.46 8.49 72.30 0.61 1.07 16 20 O -0.40 -13.92 12.46 -148.98 -1.86 -15.77 16 21 C 0.02 0.60 8.53 72.29 0.62 1.22 16 22 H 0.07 1.90 3.21 -2.39 -0.01 1.89 16 23 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.05 1.40 6.50 -2.39 -0.02 1.38 16 25 H 0.13 1.55 7.77 -2.39 -0.02 1.53 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.30 7.24 -2.39 -0.02 1.29 16 28 H 0.06 1.62 3.90 -2.39 -0.01 1.62 16 29 H 0.04 1.63 6.49 -2.39 -0.02 1.61 16 30 H 0.10 2.85 3.31 -2.39 -0.01 2.84 16 31 H 0.04 1.61 5.64 -2.38 -0.01 1.60 16 32 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 33 H 0.17 2.59 7.83 -2.39 -0.02 2.57 16 34 H 0.06 2.48 5.87 -2.39 -0.01 2.46 16 35 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.06 2.27 6.20 -2.39 -0.01 2.26 16 Total: -1.00 -80.84 266.04 3.15 -77.69 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.86 Total: 20.02 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 4.24 Total: -12.57 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -1.83 Total: -81.60 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.89 Total: -46.12 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.77 Total: 42.58 kcal Total: -80.84 3.15 -77.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597704660.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.048 kcal (2) G-P(sol) polarization free energy of solvation -80.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds