Wall clock time and date at job start Mon Mar 30 2020 03:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46963 * 2 1 4 4 N 1.46499 * 109.46914 * 119.99282 * 2 1 3 5 5 C 1.34783 * 119.99809 * 125.33568 * 4 2 1 6 6 O 1.21277 * 119.99937 * 175.57015 * 5 4 2 7 7 C 1.50697 * 119.99691 * 355.56085 * 5 4 2 8 8 H 1.09007 * 109.47462 * 36.07512 * 7 5 4 9 9 C 1.53005 * 109.46923 * 156.06916 * 7 5 4 10 10 C 1.50700 * 109.47500 * 276.06897 * 7 5 4 11 11 H 1.08000 * 119.99905 * 359.97438 * 10 7 5 12 12 C 1.37875 * 119.99966 * 180.02562 * 10 7 5 13 13 N 1.31514 * 120.00202 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 120.00025 * 180.02562 * 12 10 7 15 15 H 1.48495 * 109.47006 * 59.99797 * 14 12 10 16 16 H 1.48497 * 109.47131 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46418 * 299.99813 * 14 12 10 18 18 C 1.46494 * 120.00408 * 305.33539 * 4 2 1 19 19 C 1.54037 * 113.81915 * 141.49083 * 18 4 2 20 20 O 1.44454 * 85.42324 * 91.80814 * 19 18 4 21 21 C 1.44172 * 93.37956 * 24.08957 * 20 19 18 22 22 H 1.08997 * 109.46977 * 300.00540 * 1 2 3 23 23 H 1.08997 * 109.46917 * 60.00378 * 1 2 3 24 24 H 1.08995 * 109.46927 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47376 * 239.99817 * 2 1 3 26 26 H 1.09001 * 109.46771 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46845 * 299.99301 * 3 2 1 28 28 H 1.08996 * 109.47224 * 59.99724 * 3 2 1 29 29 H 1.09000 * 109.46875 * 175.32393 * 9 7 5 30 30 H 1.09005 * 109.46839 * 295.32014 * 9 7 5 31 31 H 1.08993 * 109.47031 * 55.32177 * 9 7 5 32 32 H 0.96996 * 120.00284 * 180.02562 * 13 12 10 33 33 H 1.08996 * 113.00146 * 9.66202 * 18 4 2 34 34 H 1.08994 * 113.86382 * 205.91203 * 19 18 4 35 35 H 1.09000 * 113.86223 * 337.62319 * 19 18 4 36 36 H 1.09003 * 113.86653 * 221.76417 * 21 20 19 37 37 H 1.09005 * 113.98064 * 90.07408 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8795 -1.7203 1.0756 6 8 3.3460 -2.2399 2.0671 7 6 3.2623 -2.2261 -0.2913 8 1 3.3269 -1.3872 -0.9843 9 6 4.6191 -2.9289 -0.2135 10 6 2.2195 -3.1997 -0.7770 11 1 1.3652 -3.4295 -0.1575 12 6 2.3566 -3.7978 -2.0117 13 7 3.3977 -3.5191 -2.7654 14 14 1.0636 -5.0040 -2.6140 15 1 -0.2528 -4.3213 -2.6903 16 1 1.4417 -5.5034 -3.9604 17 1 0.9748 -6.1467 -1.6697 18 6 1.5707 -0.2616 2.5236 19 6 1.3248 -1.4248 3.5030 20 8 2.7004 -1.2301 3.8985 21 6 2.7193 0.1451 3.4660 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 4.8576 -3.3668 -1.1828 30 1 5.3880 -2.2053 0.0574 31 1 4.5783 -3.7151 0.5403 32 1 3.4940 -3.9395 -3.6341 33 1 0.7559 0.4613 2.4853 34 1 0.6037 -1.1957 4.2876 35 1 1.1362 -2.3806 3.0141 36 1 3.6344 0.4319 2.9478 37 1 2.4254 0.8564 4.2380 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597704661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:26 Heat of formation + Delta-G solvation = -41.230509 kcal Electronic energy + Delta-G solvation = -18965.182711 eV Core-core repulsion = 16130.454902 eV Total energy + Delta-G solvation = -2834.727809 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57094 -37.85174 -35.78739 -33.71383 -30.95303 -30.37536 -28.03169 -26.94880 -26.05217 -25.17477 -23.02416 -21.27427 -20.18860 -17.44704 -16.96900 -16.26524 -15.74852 -15.21711 -14.94976 -14.68063 -14.12143 -14.04887 -13.63156 -13.15565 -12.85136 -12.53163 -11.99009 -11.80434 -11.58426 -11.49916 -11.26025 -10.96914 -10.83451 -10.80926 -10.71302 -10.33378 -10.23971 -10.07258 -9.88783 -9.16324 -9.01157 -8.51346 -8.16820 -7.99546 -6.10336 -4.18767 3.26587 3.31898 3.34216 3.57670 3.77073 4.15225 4.38167 4.74316 5.15009 5.20812 5.34270 5.44681 5.49278 5.51811 5.55964 5.81984 5.82807 6.00637 6.03753 6.13608 6.17468 6.29222 6.44929 6.52033 6.60233 6.72090 6.85969 7.05194 7.15697 7.34045 7.58617 7.77365 7.97585 8.20488 8.33025 8.81128 9.34011 9.47613 10.95065 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025044 B = 0.008954 C = 0.008229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.783970 B = 3126.356593 C = 3401.919220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.127 3.873 3 C -0.161 4.161 4 N -0.601 5.601 5 C 0.516 3.484 6 O -0.522 6.522 7 C 0.032 3.968 8 H 0.045 0.955 9 C -0.125 4.125 10 C -0.506 4.506 11 H 0.056 0.944 12 C 0.067 3.933 13 N -0.885 5.885 14 Si 0.896 3.104 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.087 3.913 19 C 0.028 3.972 20 O -0.339 6.339 21 C 0.016 3.984 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.120 0.880 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.008 0.992 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 9.693 4.968 12.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.024 3.976 3 C -0.219 4.219 4 N -0.336 5.336 5 C 0.307 3.693 6 O -0.396 6.396 7 C 0.011 3.989 8 H 0.062 0.938 9 C -0.183 4.183 10 C -0.545 4.545 11 H 0.074 0.926 12 C -0.135 4.135 13 N -0.523 5.523 14 Si 0.724 3.276 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.019 4.019 19 C -0.050 4.050 20 O -0.256 6.256 21 C -0.063 4.063 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.138 0.862 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.079 9.160 5.418 11.792 hybrid contribution -0.928 -0.410 -0.449 1.109 sum -6.007 8.750 4.969 11.719 Atomic orbital electron populations 1.22113 0.95651 1.02655 1.01071 1.21280 0.94007 0.92553 0.89760 1.22203 1.01649 0.96626 1.01411 1.48022 1.47388 1.34393 1.03752 1.22050 0.76215 0.77253 0.93764 1.90703 1.52774 1.56383 1.39781 1.18933 0.95839 0.96704 0.87435 0.93761 1.21621 0.94867 0.98944 1.02911 1.20693 1.06490 1.25419 1.01861 0.92621 1.24898 0.95706 0.96469 0.96459 1.69868 1.28015 1.43288 1.11112 0.86582 0.81643 0.81503 0.77888 1.20151 1.21153 1.20168 1.23542 0.96427 0.96536 0.85428 1.24167 0.85585 1.00307 0.94931 1.89960 1.26372 1.23911 1.85380 1.24276 0.99813 0.86713 0.95499 0.93393 0.91953 0.91695 0.86225 0.92464 0.91866 0.93171 0.89395 0.97283 0.94349 0.92643 0.89486 0.90880 0.89156 0.89884 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.11 37.16 0.34 -1.85 16 2 C 0.13 2.07 3.07 -67.93 -0.21 1.86 16 3 C -0.16 -2.12 9.27 37.16 0.34 -1.77 16 4 N -0.60 -11.18 2.62 -166.04 -0.44 -11.61 16 5 C 0.52 11.95 6.18 -10.98 -0.07 11.88 16 6 O -0.52 -13.44 11.91 -19.26 -0.23 -13.67 16 7 C 0.03 0.79 1.80 -92.92 -0.17 0.63 16 8 H 0.04 1.11 6.28 -51.92 -0.33 0.79 16 9 C -0.13 -3.22 8.64 37.16 0.32 -2.89 16 10 C -0.51 -13.42 8.31 -34.44 -0.29 -13.71 16 11 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 13 N -0.88 -24.13 11.29 55.43 0.63 -23.50 16 14 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.09 1.37 3.77 -66.85 -0.25 1.12 16 19 C 0.03 0.48 8.17 37.64 0.31 0.79 16 20 O -0.34 -6.82 9.73 -60.05 -0.58 -7.40 16 21 C 0.02 0.25 8.57 37.64 0.32 0.58 16 22 H 0.05 0.58 6.68 -51.93 -0.35 0.23 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.12 2.30 5.20 -51.93 -0.27 2.03 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.59 7.74 -51.93 -0.40 0.19 16 29 H 0.09 2.37 5.96 -51.93 -0.31 2.06 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 1.01 7.70 -51.93 -0.40 0.61 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.09 1.10 6.57 -51.93 -0.34 0.76 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.76 7.51 -51.93 -0.39 1.37 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 293.40 15.07 4.42 4.42 Total: -1.00 -30.35 293.40 -6.37 -36.73 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.71 Total: 1.09 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 0.56 Total: -1.69 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.19 Total: -35.11 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.81 Total: -21.07 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.35 -6.37 -36.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597704661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.505 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds